jgi.p|Nanoce1779_2|651305, mRNA_11945 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|651305
Unique NamemRNA_11945
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length741
Alignment locationscaffold_171:26954..27903 +

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Properties
Property NameValue
TranscriptId651391
TrackFilteredModels2
ProteinId651305
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:26954..27903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651305gene_11945Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651305mRNA_11945-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11945CDS_11945Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11945 ID=mRNA_11945|Name=jgi.p|Nanoce1779_2|651305|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
ATGCTCAGTAGCCTCGCCACGAAGGCAGGAGCTAGCAGCCTGGCCACGAA
GGCAGGAGCCATGGCGAGGAGGGGCGGCGCGCTTTTAGGCACAGGGAAGG
GCCCCGGGCCGCAGGGATTTCTCTGGACACTTCAACCGGAGACGGGTACG
GGCAGTGGAGGGACGTCCGCGAAGGAGTATGCAATTGGTGTACAGGTCGT
TAGTGGGGTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCACA
TCGACCAGCGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATC
AAATCGGCACGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTC
CGAGGAGCGTCTGAGTGCGGAGGTAGACCGATATAAATACGACTTACAAC
TGAGGTTCACCCACGATTTCAAAGCAATTGGTGTACAGGTCGTTAGTGGG
GTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCACATCGACCA
GCGGGAGATTAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATCGAGCGTG
TAAAAGGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATGAAA
TCGGCAGGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCGA
GGAGCGTCTGAGAGCGGAGGTAGACCGATATAAATACGACTTACAACTGA
GGTTCACCCACGATTTCAAAGCGTATCAAGCTCAGTTGTAA
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protein sequence of jgi.p|Nanoce1779_2|651305

>mRNA_11945-protein ID=mRNA_11945-protein|Name=jgi.p|Nanoce1779_2|651305|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MLSSLATKAGASSLATKAGAMARRGGALLGTGKGPGPQGFLWTLQPETGT
GSGGTSAKEYAIGVQVVSGVLGVASLTAMAVHHIDQREIKRVEGERAAEI
KSARAKIKRVEGERRLSEERLSAEVDRYKYDLQLRFTHDFKAIGVQVVSG
VLGVASLTAMAVHHIDQREIKRVEGERAAEIERVKGEIKRVEGERAAEMK
SAGAKIKRVEGERRLSEERLRAEVDRYKYDLQLRFTHDFKAYQAQL*
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mRNA from alignment at scaffold_171:26954..27903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11945 ID=mRNA_11945|Name=jgi.p|Nanoce1779_2|651305|organism=Nannochloropsis oceanica|type=mRNA|length=950bp|location=Sequence derived from alignment at scaffold_171:26954..27903+ (Nannochloropsis oceanica)
ATGCTCAGTAGCCTCGCCACGAAGGCAGGAGCTAGCAGCCTGGCCACGAA
GGCAGGAGCCATGGCGAGGAGGGGCGGCGCGCTTTTAGGCACAGGTAAGG
TGGCTTGTGTCGATGCACCTTGGGGAGGACGGTTTGTTGGTGGCCGAATA
GTGGGACGTTCGCTGCACGAGACTGCCTCCTGCCAGCGGCATGTAGATCC
ATTTTCGTCGGCCTGCCTGTCCTGTATGCGTTCCAATCTTTGCTGTGTGG
ATAAGGGGCCGCGCAAGGTCTTGACGCACAAGCACATCCATACACGCCAA
CAGGGAAGGGCCCCGGGCCGCAGGGATTTCTCTGGACACTTCAACCGGAG
ACGGGTACGGGCAGTGGAGGGACGTCCGCGAAGGAGTATGCAATTGGTGT
ACAGGTCGTTAGTGGGGTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCG
TCCATCACATCGACCAGCGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCG
GCGGAGATCAAATCGGCACGGGCGAAGATCAAGCGTGTGGAGGGCGAGCG
AAGGTTGTCCGAGGAGCGTCTGAGTGCGGAGGTAGACCGATATAAATACG
ACTTACAACTGAGGTTCACCCACGATTTCAAAGCAATTGGTGTACAGGTC
GTTAGTGGGGTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCA
CATCGACCAGCGGGAGATTAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGA
TCGAGCGTGTAAAAGGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCG
GAGATGAAATCGGCAGGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAG
GTTGTCCGAGGAGCGTCTGAGAGCGGAGGTAGACCGATATAAATACGACT
TACAACTGAGGTTCACCCACGATTTCAAAGCGTATCAAGCTCAGTTGTAA
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Coding sequence (CDS) from alignment at scaffold_171:26954..27903+

>mRNA_11945 ID=mRNA_11945|Name=jgi.p|Nanoce1779_2|651305|organism=Nannochloropsis oceanica|type=CDS|length=1482bp|location=Sequence derived from alignment at scaffold_171:26954..27903+ (Nannochloropsis oceanica)
ATGCTCAGTAGCCTCGCCACGAAGGCAGGAGCTAGCAGCCTGGCCACGAA
GGCAGGAGCCATGGCGAGGAGGGGCGGCGCGCTTTTAGGCACAGGGAAGG
GCCCCGGGCCGCAGGGATTTCTCTGGACACTTCAACCGGAGACGGGTACG
GGCAGTGGAGGGACGTCCGCGAAGGAGTATGCAATTGGTGTACAGGTCGT
TAGTGGGGTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCACA
TCGACCAGCGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATC
AAATCGGCACGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTC
CGAGGAGCGTCTGAGTGCGGAGGTAGACCGATATAAATACGACTTACAAC
TGAGGTTCACCCACGATTTCAAAGCAATTGGTGTACAGGTCGTTAGTGGG
GTGCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCACATCGACCA
GCGGGAGATTAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATCGAGCGTG
TAAAAGGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATGAAA
TCGGCAGGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCGA
GGAGCGTCTGAGAGCGGAGGTAGACCGATATAAATACGACTTACAACTGA
GGTTCACCCACGATTTCAAAGCGTATCAAGCTCAGTTGTAAATGCTCAGT
AGCCTCGCCACGAAGGCAGGAGCTAGCAGCCTGGCCACGAAGGCAGGAGC
CATGGCGAGGAGGGGCGGCGCGCTTTTAGGCACAGGGAAGGGCCCCGGGC
CGCAGGGATTTCTCTGGACACTTCAACCGGAGACGGGTACGGGCAGTGGA
GGGACGTCCGCGAAGGAGTATGCAATTGGTGTACAGGTCGTTAGTGGGGT
GCTAGGAGTCGCTAGCCTAACCGCCATGGCCGTCCATCACATCGACCAGC
GGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATCAAATCGGCA
CGGGCGAAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCGAGGAGCG
TCTGAGTGCGGAGGTAGACCGATATAAATACGACTTACAACTGAGGTTCA
CCCACGATTTCAAAGCAATTGGTGTACAGGTCGTTAGTGGGGTGCTAGGA
GTCGCTAGCCTAACCGCCATGGCCGTCCATCACATCGACCAGCGGGAGAT
TAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATCGAGCGTGTAAAAGGGG
AGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGATGAAATCGGCAGGG
GCGAAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCGAGGAGCGTCT
GAGAGCGGAGGTAGACCGATATAAATACGACTTACAACTGAGGTTCACCC
ACGATTTCAAAGCGTATCAAGCTCAGTTGTAA
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Synonyms
Publications