jgi.p|Nanoce1779_2|548544, mRNA_11938 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|548544
Unique Name	mRNA_11938
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1700
Alignment location	scaffold_171:7688..9507 -

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Properties


Property Name	Value
TranscriptId	548630
Track	FilteredModels2
ProteinId	548544

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_171	supercontig	scaffold_171:7688..9507 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|548544	gene_11938	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|548544	mRNA_11938-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11938	CDS_11938	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_171:7688..9507-
coding sequence from alignment at scaffold_171:7688..9507-

mRNA sequence

>mRNA_11938 ID=mRNA_11938|Name=jgi.p|Nanoce1779_2|548544|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp
GAGAAGGAGCGGGCTATGCAGCGGGAGTATTGGGAGGAGCATAGTAAAAA
GCAAGGGTCCAGCATGGAGAACATGATGTTGGACAGATCAGCGGCCAAGC
TAGATCTAATGGACCGCCCTGAGATTTTATCCTTGCTTCCTCCCTTCGCC
GGCACGCGCATTCTGGAGCTGGCCTCGGGCATCGGGCGCTTCACGGGCTC
GCTTGCTAGCAAGGCGGCGAGCGTGGTGACGGTGGAGTTCATGAAAGAAT
TCCTGGCCAAGAACAAGGAGCTACACGACCACCTGGGCAACTGTGAATTT
ATTTGTTCGGACGTGTTGACCCTGGCCCTCCCCCCTGCCTCGTTCGACGT
GGTTTTCTCCTGCTGGATTCAAATGTACCTGAATGACGATGAGGTCCGCA
GCCTCGCAGCCCGCACCCTGGAATGGGTGAAGCCGGGCGGCCACGCATTC
TTCCGGGAGTCGTGCTTCCGGCAGTCGGGCGATGTCTCGCGGGCCTTCAA
CCCCTCCCACTACCGGCACCCGTCTTTCTACACCTCGGTCTTCTCCCAGG
TGCGGTGCCGAGATCCGGCGGACGGCGTCGAATACGGGCTAGAGCTGGTA
CGTACACGCAACCTGGAAACATACGTGGCGGTCAAGGGCAATAAGGGCCA
AATCTGCTGGCTCTGGCGCAAGGTACCAGTGGTCGCCTCTAATACTGACT
CTGTGCCTATCCCTCAACCAAATGCCCTGCTGGCTGCCCCCGCGACGGGG
CGGCTGGCCACGCACGATGGTTTGTTCGGTGCGGGCTTTGGTAGTGACCG
GCTGGGAGGAGCAGGGCCAGCGGCGGCATTAGCGGAGGCGCTCAAACTTG
ACGGACCGGGGAAGAAGGTGGTAGACTGGCAGTGTGGTATGGGTGGGTAT
GGATTGTATGTGGCGGAGAAGTGCGGTGCTCAGGTCTGGCAGGTGGAGGA
GAGGACGGCCTTGGTGGAGCCGGCGGTGGAGAACGCCATGACCAAGCCCA
ATGCCTACACTGTCCTGGAGGTCTGTTCCTTAGAGTCTCGAGAGTTTGAT
GCCGGGAGCGTGGATGCTGTGCTGCTGCACACATCACAGCCCTCGCCATT
GGCCTCGGCCTCCACCTCGTCCTTGTCCTTCTACAAACGTGCCGCCGAAT
GGTTAAAGCCGGGCGGGTGCGTGGTGGCGGGGCTGGTGGTGGGAAGCGAG
GAGGAGGCGGAAACAATCAAGGCTGCCATGAAGCAAGCGCTGGGCGGGGA
AGTGGCCATGACTGACATGACGCCCCAGATGTTGGAATGGGTGAGAAAGG
ATTTACAGGCTTTTAAGAGCAGCAGCAGCAACAGCGGAAGCAGCAACGGC
AGCTGCAACGGCAGCAGCAGCAGTGAGGGGAGGAGCTTGAATGTGGACGG
GTGCCCAGCAGGAGCAGCAGGAGCAGAAGCAAGGTCAGCGGACGTGGGAA
TCCGGGAGCAGGGCGAGAAAGAAGTGAATGCGGCGGTGGGAAAATGGTGG
GAGGAGCAGCTGGCACAGACCAAGGCGGGCACGGTGCGGTATGTGGTCTG
TAAGGCTCTCAAGCAGCATTAGAGGAGGGTGGGGAGAGGGTAGAAGGGCT
TTCTATGGGTGGTTTCTGCTTTTCCCCTACAGATCGCTGGGGAAAGAAGG
CGTGGAACCTTGCGTGATCGCGCTTCCTCTGCCAGTCGCCTGTCTCATTT

protein sequence of jgi.p|Nanoce1779_2|548544

>mRNA_11938-protein ID=mRNA_11938-protein|Name=jgi.p|Nanoce1779_2|548544|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MQREYWEEHSKKQGSSMENMMLDRSAAKLDLMDRPEILSLLPPFAGTRIL
ELASGIGRFTGSLASKAASVVTVEFMKEFLAKNKELHDHLGNCEFICSDV
LTLALPPASFDVVFSCWIQMYLNDDEVRSLAARTLEWVKPGGHAFFRESC
FRQSGDVSRAFNPSHYRHPSFYTSVFSQVRCRDPADGVEYGLELVRTRNL
ETYVAVKGNKGQICWLWRKVPVVASNTDSVPIPQPNALLAAPATGRLATH
DGLFGAGFGSDRLGGAGPAAALAEALKLDGPGKKVVDWQCGMGGYGLYVA
EKCGAQVWQVEERTALVEPAVENAMTKPNAYTVLEVCSLESREFDAGSVD
AVLLHTSQPSPLASASTSSLSFYKRAAEWLKPGGCVVAGLVVGSEEEAET
IKAAMKQALGGEVAMTDMTPQMLEWVRKDLQAFKSSSSNSGSSNGSCNGS
SSSEGRSLNVDGCPAGAAGAEARSADVGIREQGEKEVNAAVGKWWEEQLA
QTKAGTVRYVVCKALKQH*

mRNA from alignment at scaffold_171:7688..9507-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11938 ID=mRNA_11938|Name=jgi.p|Nanoce1779_2|548544|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp|location=Sequence derived from alignment at scaffold_171:7688..9507- (Nannochloropsis oceanica)
GAGAAGGAGCGGGCTATGCAGCGGGAGTATTGGGAGGAGCATAGTAAAAA
GCAAGGGTCCAGCATGGAGAACATGATGTTGGACAGATCAGCGGCCAAGC
TAGATCTAATGGACCGCCCTGAGATTTTATCCTTGCTTCCTCCCTTCGCC
GGCACGCGCATTCTGGAGCTGGCCTCGGGCATCGGGCGCTTCACGGGCTC
GCTTGCTAGCAAGGCGGCGAGCGTGGTGACGGTGGAGTTCATGAAAGAAT
TCCTGGCCAAGAACAAGGAGCTACACGACCACCTGGGCAACTGTGAATTT
ATTTGTTCGGACGTGTTGACCCTGGCCCTCCCCCCTGCCTCGTTCGACGT
GGTTTTCTCCTGCTGGATTCAAATGTACCTGAATGACGATGAGGTCCGCA
GCCTCGCAGCCCGCACCCTGGAATGGGTGAAGCCGGGCGGCCACGCATTC
TTCCGGGAGTCGTGCTTCCGGCAGTCGGGCGATGTCTCGCGGGCCTTCAA
CCCCTCCCACTACCGGCACCCGTCTTTCTACACCTCGGTCTTCTCCCAGG
TGCGGTGCCGAGATCCGGCGGACGGCGTCGAATACGGGCTAGAGCTGGTA
CGTACACGCAACCTGGAAACATACGTGGCGGTCAAGGGCAATAAGGGCCA
AATCTGCTGGCTCTGGCGCAAGGTACCAGTGGTCGCCTCTAATACTGACT
CTGTGCCTATCCCTGTCGCGGGCGCGAGCACCAACTCTCCCGATTACAGC
CCAATCCCGCCCGCCTCGGCCCTTTCCATGCCCTATCCTAACGATAGCAG
CAGTTGCGGCAGTAGCAGCAGTAGCAGCTCTCAGCAACCAAATGCCCTGC
TGGCTGCCCCCGCGACGGGGCGGCTGGCCACGCACGATGGTTTGTTCGGT
GCGGGCTTTGGTAGTGACCGGCTGGGAGGAGCAGGGCCAGCGGCGGCATT
AGCGGAGGCGCTCAAACTTGACGGACCGGGGAAGAAGGTGGTAGACTGGC
AGTGTGGTATGGGTGGGTATGGATTGTATGTGGCGGAGAAGTGCGGTGCT
CAGGTCTGGCAGGTGGAGGAGAGGACGGCCTTGGTGGAGCCGGCGGTGGA
GAACGCCATGACCAAGCCCAATGCCTACACTGTCCTGGAGGTCTGTTCCT
TAGAGTCTCGAGAGTTTGATGCCGGGAGCGTGGATGCTGTGCTGCTGCAC
ACATCACAGCCCTCGCCATTGGCCTCGGCCTCCACCTCGTCCTTGTCCTT
CTACAAACGTGCCGCCGAATGGTTAAAGCCGGGCGGGTGCGTGGTGGCGG
GGCTGGTGGTGGGAAGCGAGGAGGAGGCGGAAACAATCAAGGCTGCCATG
AAGCAAGCGCTGGGCGGGGAAGTGGCCATGACTGACATGACGCCCCAGAT
GTTGGAATGGGTGAGAAAGGATTTACAGGCTTTTAAGAGCAGCAGCAGCA
ACAGCGGAAGCAGCAACGGCAGCTGCAACGGCAGCAGCAGCAGTGAGGGG
AGGAGCTTGAATGTGGACGGGTGCCCAGCAGGAGCAGCAGGAGCAGAAGC
AAGGTCAGCGGACGTGGGAATCCGGGAGCAGGGCGAGAAAGAAGTGAATG
CGGCGGTGGGAAAATGGTGGGAGGAGCAGCTGGCACAGACCAAGGCGGGC
ACGGTGCGGTATGTGGTCTGTAAGGCTCTCAAGCAGCATTAGAGGAGGGT
GGGGAGAGGGTAGAAGGGCTTTCTATGGGTGGTTTCTGCTTTTCCCCTAC
AGATCGCTGGGGAAAGAAGGCGTGGAACCTTGCGTGATCGCGCTTCCTCT
GCCAGTCGCCTGTCTCATTT

Coding sequence (CDS) from alignment at scaffold_171:7688..9507-

>mRNA_11938 ID=mRNA_11938|Name=jgi.p|Nanoce1779_2|548544|organism=Nannochloropsis oceanica|type=CDS|length=3114bp|location=Sequence derived from alignment at scaffold_171:7688..9507- (Nannochloropsis oceanica)
CAACCAAATGCCCTGCTGGCTGCCCCCGCGACGGGGCGGCTGGCCACGCA
CGATGGTTTGTTCGGTGCGGGCTTTGGTAGTGACCGGCTGGGAGGAGCAG
GGCCAGCGGCGGCATTAGCGGAGGCGCTCAAACTTGACGGACCGGGGAAG
AAGGTGGTAGACTGGCAGTGTGGTATGGGTGGGTATGGATTGTATGTGGC
GGAGAAGTGCGGTGCTCAGGTCTGGCAGGTGGAGGAGAGGACGGCCTTGG
TGGAGCCGGCGGTGGAGAACGCCATGACCAAGCCCAATGCCTACACTGTC
CTGGAGGTCTGTTCCTTAGAGTCTCGAGAGTTTGATGCCGGGAGCGTGGA
TGCTGTGCTGCTGCACACATCACAGCCCTCGCCATTGGCCTCGGCCTCCA
CCTCGTCCTTGTCCTTCTACAAACGTGCCGCCGAATGGTTAAAGCCGGGC
GGGTGCGTGGTGGCGGGGCTGGTGGTGGGAAGCGAGGAGGAGGCGGAAAC
AATCAAGGCTGCCATGAAGCAAGCGCTGGGCGGGGAAGTGGCCATGACTG
ACATGACGCCCCAGATGTTGGAATGGGTGAGAAAGGATTTACAGGCTTTT
AAGAGCAGCAGCAGCAACAGCGGAAGCAGCAACGGCAGCTGCAACGGCAG
CAGCAGCAGTGAGGGGAGGAGCTTGAATGTGGACGGGTGCCCAGCAGGAG
CAGCAGGAGCAGAAGCAAGGTCAGCGGACGTGGGAATCCGGGAGCAGGGC
GAGAAAGAAGTGAATGCGGCGGTGGGAAAATGGTGGGAGGAGCAGCTGGC
ACAGACCAAGGCGGGCACGGTGCGGTATGTGGTCTGTAAGGCTCTCAAGC
AGCATTAGATGCAGCGGGAGTATTGGGAGGAGCATAGTAAAAAGCAAGGG
TCCAGCATGGAGAACATGATGTTGGACAGATCAGCGGCCAAGCTAGATCT
AATGGACCGCCCTGAGATTTTATCCTTGCTTCCTCCCTTCGCCGGCACGC
GCATTCTGGAGCTGGCCTCGGGCATCGGGCGCTTCACGGGCTCGCTTGCT
AGCAAGGCGGCGAGCGTGGTGACGGTGGAGTTCATGAAAGAATTCCTGGC
CAAGAACAAGGAGCTACACGACCACCTGGGCAACTGTGAATTTATTTGTT
CGGACGTGTTGACCCTGGCCCTCCCCCCTGCCTCGTTCGACGTGGTTTTC
TCCTGCTGGATTCAAATGTACCTGAATGACGATGAGGTCCGCAGCCTCGC
AGCCCGCACCCTGGAATGGGTGAAGCCGGGCGGCCACGCATTCTTCCGGG
AGTCGTGCTTCCGGCAGTCGGGCGATGTCTCGCGGGCCTTCAACCCCTCC
CACTACCGGCACCCGTCTTTCTACACCTCGGTCTTCTCCCAGGTGCGGTG
CCGAGATCCGGCGGACGGCGTCGAATACGGGCTAGAGCTGGTACGTACAC
GCAACCTGGAAACATACGTGGCGGTCAAGGGCAATAAGGGCCAAATCTGC
TGGCTCTGGCGCAAGGTACCAGTGGTCGCCTCTAATACTGACTCTGTGCC
TATCCCTCAACCAAATGCCCTGCTGGCTGCCCCCGCGACGGGGCGGCTGG
CCACGCACGATGGTTTGTTCGGTGCGGGCTTTGGTAGTGACCGGCTGGGA
GGAGCAGGGCCAGCGGCGGCATTAGCGGAGGCGCTCAAACTTGACGGACC
GGGGAAGAAGGTGGTAGACTGGCAGTGTGGTATGGGTGGGTATGGATTGT
ATGTGGCGGAGAAGTGCGGTGCTCAGGTCTGGCAGGTGGAGGAGAGGACG
GCCTTGGTGGAGCCGGCGGTGGAGAACGCCATGACCAAGCCCAATGCCTA
CACTGTCCTGGAGGTCTGTTCCTTAGAGTCTCGAGAGTTTGATGCCGGGA
GCGTGGATGCTGTGCTGCTGCACACATCACAGCCCTCGCCATTGGCCTCG
GCCTCCACCTCGTCCTTGTCCTTCTACAAACGTGCCGCCGAATGGTTAAA
GCCGGGCGGGTGCGTGGTGGCGGGGCTGGTGGTGGGAAGCGAGGAGGAGG
CGGAAACAATCAAGGCTGCCATGAAGCAAGCGCTGGGCGGGGAAGTGGCC
ATGACTGACATGACGCCCCAGATGTTGGAATGGGTGAGAAAGGATTTACA
GGCTTTTAAGAGCAGCAGCAGCAACAGCGGAAGCAGCAACGGCAGCTGCA
ACGGCAGCAGCAGCAGTGAGGGGAGGAGCTTGAATGTGGACGGGTGCCCA
GCAGGAGCAGCAGGAGCAGAAGCAAGGTCAGCGGACGTGGGAATCCGGGA
GCAGGGCGAGAAAGAAGTGAATGCGGCGGTGGGAAAATGGTGGGAGGAGC
AGCTGGCACAGACCAAGGCGGGCACGGTGCGGTATGTGGTCTGTAAGGCT
CTCAAGCAGCATTAGATGCAGCGGGAGTATTGGGAGGAGCATAGTAAAAA
GCAAGGGTCCAGCATGGAGAACATGATGTTGGACAGATCAGCGGCCAAGC
TAGATCTAATGGACCGCCCTGAGATTTTATCCTTGCTTCCTCCCTTCGCC
GGCACGCGCATTCTGGAGCTGGCCTCGGGCATCGGGCGCTTCACGGGCTC
GCTTGCTAGCAAGGCGGCGAGCGTGGTGACGGTGGAGTTCATGAAAGAAT
TCCTGGCCAAGAACAAGGAGCTACACGACCACCTGGGCAACTGTGAATTT
ATTTGTTCGGACGTGTTGACCCTGGCCCTCCCCCCTGCCTCGTTCGACGT
GGTTTTCTCCTGCTGGATTCAAATGTACCTGAATGACGATGAGGTCCGCA
GCCTCGCAGCCCGCACCCTGGAATGGGTGAAGCCGGGCGGCCACGCATTC
TTCCGGGAGTCGTGCTTCCGGCAGTCGGGCGATGTCTCGCGGGCCTTCAA
CCCCTCCCACTACCGGCACCCGTCTTTCTACACCTCGGTCTTCTCCCAGG
TGCGGTGCCGAGATCCGGCGGACGGCGTCGAATACGGGCTAGAGCTGGTA
CGTACACGCAACCTGGAAACATACGTGGCGGTCAAGGGCAATAAGGGCCA
AATCTGCTGGCTCTGGCGCAAGGTACCAGTGGTCGCCTCTAATACTGACT
CTGTGCCTATCCCT

Synonyms

Publications