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Properties
| Property Name | Value |
|---|
| TranscriptId | 619217 |
| Track | FilteredModels2 |
| ProteinId | 619131 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:32..2130 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11935 ID=mRNA_11935|Name=jgi.p|Nanoce1779_2|619131|organism=Nannochloropsis oceanica|type=mRNA|length=860bp
AGAGACAGGGACGCAGTCATGGCAGCAGCAGCGGCTGCACGGCGGCATCA
GCCGCAGACATCAACGCTTCTCGTCCTGTTGGCCATGCTCCTCCTCGTCA
CCATAGCTCCCGCCTTTCTCCTCCCTTCCCCATCTATTTCTTCCACGTTG
ACAACGACACGGATGTCCAACGGTCAGGGTCAAGGAGACTTTGACGCCCC
CGAAAGCGACGACGGCACCAGCCCACCTCCCGCTCCATCAGACATGCTGG
CGCGCATCATGCAGGGAGCTCAACAACGACGGGCATCTTCGGGCGAAGGC
GGCGACTGGGCGTTGTATTCGTCGGCGCTGCGAGGCGGTGTGGTCCTGGT
TGCCAACCCAGCCGTTTTTCTCAACCGCCCGCCCGCGGAGCTAGCCTCCC
GCTTCTTCCTCCCTCAAGACCTCTCCCTCGAACTGATGGACGGCCTGGGC
GGCAGGAGCCCGCAAGCCGTCGACAATCTGGCCAATATCTTGCCCGTGGT
TCTCTTGCTTGGCTCCGGGAATGGCGGCACCAGCGGCCTGGTGCTCAATA
GGCGAACGGGCTATTTGGTGGGGGACCTGAACGTGGACTCGTCGGGATTC
AAGATCCAGCCTGTCCACCTAGGGGGCATGGGCGAGAACGAGGGCATCTT
CATGCTCCACGCATACCCGGAGCTGCAGAAGACGACTCAGGTCACGAATG
ACGGGCTGTGCTTCGGAGGCAACTATACGGCGGCCCAAGAGCTGGTGCTC
GGGAAGAAAGCCTCCTCTGCGCGCTTCAAATTCTTCATCCAGCAGACCGT
CTGGGCCCCGGGCGAGCTCAAGAAGGAGATTGAGGACAATGTCTGGTATC
CCGCCCAGGT back to topprotein sequence of jgi.p|Nanoce1779_2|619131 >mRNA_11935-protein ID=mRNA_11935-protein|Name=jgi.p|Nanoce1779_2|619131|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MAAAAAARRHQPQTSTLLVLLAMLLLVTIAPAFLLPSPSISSTLTTTRMS
NGQGQGDFDAPESDDGTSPPPAPSDMLARIMQGAQQRRASSGEGGDWALY
SSALRGGVVLVANPAVFLNRPPAELASRFFLPQDLSLELMDGLGGRSPQA
VDNLANILPVVLLLGSGNGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVH
LGGMGENEGIFMLHAYPELQKTTQVTNDGLCFGGNYTAAQELVLGKKASS
ARFKFFIQQTVWAPGELKKEIEDNVWYPAQ back to topmRNA from alignment at scaffold_171:32..2130- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11935 ID=mRNA_11935|Name=jgi.p|Nanoce1779_2|619131|organism=Nannochloropsis oceanica|type=mRNA|length=2099bp|location=Sequence derived from alignment at scaffold_171:32..2130- (Nannochloropsis oceanica)
AGAGACAGGGACGCAGTCATGGCAGCAGCAGCGGCTGCACGGCGGCATCA
GCCGCAGACATCAACGCTTCTCGTCCTGTTGGCCATGCTCCTCCTCGTCA
CCATAGCTCCCGCCTTTCTCCTCCCTTCCCCATCTATTTCTTCCACGTTG
ACAACGACACGGATGTCCAACGGTCAGGGTCAAGGAGACTTTGACGCCCC
CGAAAGCGACGACGGCACCAGCCCACCTCCCGCTCCATCAGACATGCTGG
CGCGCATCATGCAGGTAACTTTTGTTGCTCGGTACATTTTTTCCCCGATG
ATGACCGTATTGCGGTCCCTCCCTACTTTCTACCCACGCTCCCTCGTTTG
ACGCTCGCCTTCTCTCTTATGTTCATCCTTCGTCACTCCAGGGAGCTCAA
CAACGACGGGCATCTTCGGGCGAAGGCGGCGACTGGGCGTTGTATTCGTC
GGCGCTGCGAGGTACATATTGGACGAGGGGAAGGGAGGGGAGGGTAGGGG
AGATAGGAGTAGGAATGATGACGGAAAGGAGGAGAGCGAGAAAAGTAAGT
ATCACCTGCACCTTTACATAATAGTCACTCTCACCTTTGTCTATCAATTG
AAACACAGGCGGTGTGGTCCTGGTTGCCAACCCAGCCGTTTTTCTCAACC
GCCCGCCCGCGGAGCTAGCCTCCCGCTTCTTCCTCCCTCAAGACCTCTCC
CTCGAACTGATGGACGGCCTGGGCGGTGCGTTATCTTTGTATATACACAT
GTAGTTTATATCTATACATGTACTGTTATGATCCCCGACAAGTCCTCATA
AATATTCATATTTACCATTGTTTGTATCTATACATATGTGCCCTGCTTAG
TCTCTGACTCTTCCTTCACGTGCTTGTCTTCCTCTTTCGTGCATGCCACT
AATCACACGTCCTTCCATCCCTCCCTCCCTCCCTCGTTCCTCTTCTATCT
CTCCTCCTCCAGGCAGGAGCCCGCAAGCCGTCGACAATCTGGCCAATATC
TTGCCCGTGGTTCTCTTGCTTGGCTCCGGGAATGGCGGCACCAGCGGCCT
GGTGCTCAATAGGCGAACGGGCTATTTGGTGGGGGACCTGAACGTGGACT
CGTCGGGTAGGGAGGAAGGGGAGGAGGAAGGGGAGAAGGGAGGAAAGGAG
AATAGGAAGGAGGGAGGGTAGGGAAGAGTAGAAGGGAATAGAGAGGAGGT
TGTAGAGAGTTCTCCACTATCGCGTCTCATCCCGCCCCACACGAGGGTCA
CGGCCACAAGCGACGAAATGTGCCTGCGCTAGCCACTCACGCTCCCTCCC
TCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCC
TCCCCACCATATGCCCAGGATTCAAGATCCAGCCTGTCCACCTAGGGGGC
ATGGGCGAGAACGAGGGCATCTTCATGCTCCACGCATACCCGGAGCTGCA
GAAGACGACTCAGGTCACGAATGACGGGCTGTGCTTCGGAGGTAGGGAAG
AAAGGCGAGAGGGAAGGGAGGACGGGACAGTCTCGTATGGGAGGTATTCT
TTTAATGCGTGCCACTGATCAATCATTCCTTTCGTCTTTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCC
TCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTTCCTCTCCCTCTTCAGGCAACTATACGGCGGCCCAAGAGCTGGTGCT
CGGGAAGAAAGCCTCCTCTGCGCGCTTCAAATTCTTCATCCAGCAGACCG
TCTGGGCCCCGGGCGAGCTCAAGAAGGAGATTGAGGTAGGCCACACTCTC
CCTCCTTTCCCTCCCTCCCGCCCTCTCTCTCCCCCTCCTTCCCCCTGGTG
ATATGCCTCTCTCCTCAATTCCCTCGCCTCTCATCCCTCCCTCCCTCCCT
CCCTCCCTCTCCCTCCACCACAGGACAATGTCTGGTATCCCGCCCAGGT back to topCoding sequence (CDS) from alignment at scaffold_171:32..2130- >mRNA_11935 ID=mRNA_11935|Name=jgi.p|Nanoce1779_2|619131|organism=Nannochloropsis oceanica|type=CDS|length=5894bp|location=Sequence derived from alignment at scaffold_171:32..2130- (Nannochloropsis oceanica)
GACAATGTCTGGTATCCCGCCCAGGTGCAACTATACGGCGGCCCAAGAGC
TGGTGCTCGGGAAGAAAGCCTCCTCTGCGCGCTTCAAATTCTTCATCCAG
CAGACCGTCTGGGCCCCGGGCGAGCTCAAGAAGGAGATTGAGGATTCAAG
ATCCAGCCTGTCCACCTAGGGGGCATGGGCGAGAACGAGGGCATCTTCAT
GCTCCACGCATACCCGGAGCTGCAGAAGACGACTCAGGTCACGAATGACG
GGCTGTGCTTCGGAGGCAGGAGCCCGCAAGCCGTCGACAATCTGGCCAAT
ATCTTGCCCGTGGTTCTCTTGCTTGGCTCCGGGAATGGCGGCACCAGCGG
CCTGGTGCTCAATAGGCGAACGGGCTATTTGGTGGGGGACCTGAACGTGG
ACTCGTCGGGCGGTGTGGTCCTGGTTGCCAACCCAGCCGTTTTTCTCAAC
CGCCCGCCCGCGGAGCTAGCCTCCCGCTTCTTCCTCCCTCAAGACCTCTC
CCTCGAACTGATGGACGGCCTGGGCGGGAGCTCAACAACGACGGGCATCT
TCGGGCGAAGGCGGCGACTGGGCGTTGTATTCGTCGGCGCTGCGAGATGG
CAGCAGCAGCGGCTGCACGGCGGCATCAGCCGCAGACATCAACGCTTCTC
GTCCTGTTGGCCATGCTCCTCCTCGTCACCATAGCTCCCGCCTTTCTCCT
CCCTTCCCCATCTATTTCTTCCACGTTGACAACGACACGGATGTCCAACG
GTCAGGGTCAAGGAGACTTTGACGCCCCCGAAAGCGACGACGGCACCAGC
CCACCTCCCGCTCCATCAGACATGCTGGCGCGCATCATGCAGGACAATGT
CTGGTATCCCGCCCAGGTGCAACTATACGGCGGCCCAAGAGCTGGTGCTC
GGGAAGAAAGCCTCCTCTGCGCGCTTCAAATTCTTCATCCAGCAGACCGT
CTGGGCCCCGGGCGAGCTCAAGAAGGAGATTGAGGATTCAAGATCCAGCC
TGTCCACCTAGGGGGCATGGGCGAGAACGAGGGCATCTTCATGCTCCACG
CATACCCGGAGCTGCAGAAGACGACTCAGGTCACGAATGACGGGCTGTGC
TTCGGAGGCAGGAGCCCGCAAGCCGTCGACAATCTGGCCAATATCTTGCC
CGTGGTTCTCTTGCTTGGCTCCGGGAATGGCGGCACCAGCGGCCTGGTGC
TCAATAGGCGAACGGGCTATTTGGTGGGGGACCTGAACGTGGACTCGTCG
GGCGGTGTGGTCCTGGTTGCCAACCCAGCCGTTTTTCTCAACCGCCCGCC
CGCGGAGCTAGCCTCCCGCTTCTTCCTCCCTCAAGACCTCTCCCTCGAAC
TGATGGACGGCCTGGGCGGGAGCTCAACAACGACGGGCATCTTCGGGCGA
AGGCGGCGACTGGGCGTTGTATTCGTCGGCGCTGCGAGATGGCAGCAGCA
GCGGCTGCACGGCGGCATCAGCCGCAGACATCAACGCTTCTCGTCCTGTT
GGCCATGCTCCTCCTCGTCACCATAGCTCCCGCCTTTCTCCTCCCTTCCC
CATCTATTTCTTCCACGTTGACAACGACACGGATGTCCAACGGTCAGGGT
CAAGGAGACTTTGACGCCCCCGAAAGCGACGACGGCACCAGCCCACCTCC
CGCTCCATCAGACATGCTGGCGCGCATCATGCAGGACAATGTCTGGTATC
CCGCCCAGGTGCAACTATACGGCGGCCCAAGAGCTGGTGCTCGGGAAGAA
AGCCTCCTCTGCGCGCTTCAAATTCTTCATCCAGCAGACCGTCTGGGCCC
CGGGCGAGCTCAAGAAGGAGATTGAGGATTCAAGATCCAGCCTGTCCACC
TAGGGGGCATGGGCGAGAACGAGGGCATCTTCATGCTCCACGCATACCCG
GAGCTGCAGAAGACGACTCAGGTCACGAATGACGGGCTGTGCTTCGGAGG
CAGGAGCCCGCAAGCCGTCGACAATCTGGCCAATATCTTGCCCGTGGTTC
TCTTGCTTGGCTCCGGGAATGGCGGCACCAGCGGCCTGGTGCTCAATAGG
CGAACGGGCTATTTGGTGGGGGACCTGAACGTGGACTCGTCGGGCGGTGT
GGTCCTGGTTGCCAACCCAGCCGTTTTTCTCAACCGCCCGCCCGCGGAGC
TAGCCTCCCGCTTCTTCCTCCCTCAAGACCTCTCCCTCGAACTGATGGAC
GGCCTGGGCGGGAGCTCAACAACGACGGGCATCTTCGGGCGAAGGCGGCG
ACTGGGCGTTGTATTCGTCGGCGCTGCGAGATGGCAGCAGCAGCGGCTGC
ACGGCGGCATCAGCCGCAGACATCAACGCTTCTCGTCCTGTTGGCCATGC
TCCTCCTCGTCACCATAGCTCCCGCCTTTCTCCTCCCTTCCCCATCTATT
TCTTCCACGTTGACAACGACACGGATGTCCAACGGTCAGGGTCAAGGAGA
CTTTGACGCCCCCGAAAGCGACGACGGCACCAGCCCACCTCCCGCTCCAT
CAGACATGCTGGCGCGCATCATGCAGGACAATGTCTGGTATCCCGCCCAG
GTGCAACTATACGGCGGCCCAAGAGCTGGTGCTCGGGAAGAAAGCCTCCT
CTGCGCGCTTCAAATTCTTCATCCAGCAGACCGTCTGGGCCCCGGGCGAG
CTCAAGAAGGAGATTGAGGATTCAAGATCCAGCCTGTCCACCTAGGGGGC
ATGGGCGAGAACGAGGGCATCTTCATGCTCCACGCATACCCGGAGCTGCA
GAAGACGACTCAGGTCACGAATGACGGGCTGTGCTTCGGAGGCAGGAGCC
CGCAAGCCGTCGACAATCTGGCCAATATCTTGCCCGTGGTTCTCTTGCTT
GGCTCCGGGAATGGCGGCACCAGCGGCCTGGTGCTCAATAGGCGAACGGG
CTATTTGGTGGGGGACCTGAACGTGGACTCGTCGGGCGGTGTGGTCCTGG
TTGCCAACCCAGCCGTTTTTCTCAACCGCCCGCCCGCGGAGCTAGCCTCC
CGCTTCTTCCTCCCTCAAGACCTCTCCCTCGAACTGATGGACGGCCTGGG
CGGGAGCTCAACAACGACGGGCATCTTCGGGCGAAGGCGGCGACTGGGCG
TTGTATTCGTCGGCGCTGCGAGATGGCAGCAGCAGCGGCTGCACGGCGGC
ATCAGCCGCAGACATCAACGCTTCTCGTCCTGTTGGCCATGCTCCTCCTC
GTCACCATAGCTCCCGCCTTTCTCCTCCCTTCCCCATCTATTTCTTCCAC
GTTGACAACGACACGGATGTCCAACGGTCAGGGTCAAGGAGACTTTGACG
CCCCCGAAAGCGACGACGGCACCAGCCCACCTCCCGCTCCATCAGACATG
CTGGCGCGCATCATGCAGGACAATGTCTGGTATCCCGCCCAGGTGCAACT
ATACGGCGGCCCAAGAGCTGGTGCTCGGGAAGAAAGCCTCCTCTGCGCGC
TTCAAATTCTTCATCCAGCAGACCGTCTGGGCCCCGGGCGAGCTCAAGAA
GGAGATTGAGGATTCAAGATCCAGCCTGTCCACCTAGGGGGCATGGGCGA
GAACGAGGGCATCTTCATGCTCCACGCATACCCGGAGCTGCAGAAGACGA
CTCAGGTCACGAATGACGGGCTGTGCTTCGGAGGCAGGAGCCCGCAAGCC
GTCGACAATCTGGCCAATATCTTGCCCGTGGTTCTCTTGCTTGGCTCCGG
GAATGGCGGCACCAGCGGCCTGGTGCTCAATAGGCGAACGGGCTATTTGG
TGGGGGACCTGAACGTGGACTCGTCGGGCGGTGTGGTCCTGGTTGCCAAC
CCAGCCGTTTTTCTCAACCGCCCGCCCGCGGAGCTAGCCTCCCGCTTCTT
CCTCCCTCAAGACCTCTCCCTCGAACTGATGGACGGCCTGGGCGGGAGCT
CAACAACGACGGGCATCTTCGGGCGAAGGCGGCGACTGGGCGTTGTATTC
GTCGGCGCTGCGAGATGGCAGCAGCAGCGGCTGCACGGCGGCATCAGCCG
CAGACATCAACGCTTCTCGTCCTGTTGGCCATGCTCCTCCTCGTCACCAT
AGCTCCCGCCTTTCTCCTCCCTTCCCCATCTATTTCTTCCACGTTGACAA
CGACACGGATGTCCAACGGTCAGGGTCAAGGAGACTTTGACGCCCCCGAA
AGCGACGACGGCACCAGCCCACCTCCCGCTCCATCAGACATGCTGGCGCG
CATCATGCAGGACAATGTCTGGTATCCCGCCCAGGTGCAACTATACGGCG
GCCCAAGAGCTGGTGCTCGGGAAGAAAGCCTCCTCTGCGCGCTTCAAATT
CTTCATCCAGCAGACCGTCTGGGCCCCGGGCGAGCTCAAGAAGGAGATTG
AGGATTCAAGATCCAGCCTGTCCACCTAGGGGGCATGGGCGAGAACGAGG
GCATCTTCATGCTCCACGCATACCCGGAGCTGCAGAAGACGACTCAGGTC
ACGAATGACGGGCTGTGCTTCGGAGGCAGGAGCCCGCAAGCCGTCGACAA
TCTGGCCAATATCTTGCCCGTGGTTCTCTTGCTTGGCTCCGGGAATGGCG
GCACCAGCGGCCTGGTGCTCAATAGGCGAACGGGCTATTTGGTGGGGGAC
CTGAACGTGGACTCGTCGGGCGGTGTGGTCCTGGTTGCCAACCCAGCCGT
TTTTCTCAACCGCCCGCCCGCGGAGCTAGCCTCCCGCTTCTTCCTCCCTC
AAGACCTCTCCCTCGAACTGATGGACGGCCTGGGCGGGAGCTCAACAACG
ACGGGCATCTTCGGGCGAAGGCGGCGACTGGGCGTTGTATTCGTCGGCGC
TGCGAGATGGCAGCAGCAGCGGCTGCACGGCGGCATCAGCCGCAGACATC
AACGCTTCTCGTCCTGTTGGCCATGCTCCTCCTCGTCACCATAGCTCCCG
CCTTTCTCCTCCCTTCCCCATCTATTTCTTCCACGTTGACAACGACACGG
ATGTCCAACGGTCAGGGTCAAGGAGACTTTGACGCCCCCGAAAGCGACGA
CGGCACCAGCCCACCTCCCGCTCCATCAGACATGCTGGCGCGCATCATGC
AGGACAATGTCTGGTATCCCGCCCAGGTGCAACTATACGGCGGCCCAAGA
GCTGGTGCTCGGGAAGAAAGCCTCCTCTGCGCGCTTCAAATTCTTCATCC
AGCAGACCGTCTGGGCCCCGGGCGAGCTCAAGAAGGAGATTGAGGATTCA
AGATCCAGCCTGTCCACCTAGGGGGCATGGGCGAGAACGAGGGCATCTTC
ATGCTCCACGCATACCCGGAGCTGCAGAAGACGACTCAGGTCACGAATGA
CGGGCTGTGCTTCGGAGGCAGGAGCCCGCAAGCCGTCGACAATCTGGCCA
ATATCTTGCCCGTGGTTCTCTTGCTTGGCTCCGGGAATGGCGGCACCAGC
GGCCTGGTGCTCAATAGGCGAACGGGCTATTTGGTGGGGGACCTGAACGT
GGACTCGTCGGGCGGTGTGGTCCTGGTTGCCAACCCAGCCGTTTTTCTCA
ACCGCCCGCCCGCGGAGCTAGCCTCCCGCTTCTTCCTCCCTCAAGACCTC
TCCCTCGAACTGATGGACGGCCTGGGCGGGAGCTCAACAACGACGGGCAT
CTTCGGGCGAAGGCGGCGACTGGGCGTTGTATTCGTCGGCGCTGCGAGAT
GGCAGCAGCAGCGGCTGCACGGCGGCATCAGCCGCAGACATCAACGCTTC
TCGTCCTGTTGGCCATGCTCCTCCTCGTCACCATAGCTCCCGCCTTTCTC
CTCCCTTCCCCATCTATTTCTTCCACGTTGACAACGACACGGATGTCCAA
CGGTCAGGGTCAAGGAGACTTTGACGCCCCCGAAAGCGACGACGGCACCA
GCCCACCTCCCGCTCCATCAGACATGCTGGCGCGCATCATGCAG back to top
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