scaffold_128, scaffold_128 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_128
Unique Name	scaffold_128
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	34702
Alignment location	jgi.p\|Nanoce1779_2\|61186:2741..5758 +
Alignment location	jgi.p\|Nanoce1779_2\|61186:2741..5758 +
Alignment location	CDS_12212:2994..3023 +
Alignment location	CDS_12212:3200..3454 +
Alignment location	CDS_12212:3594..3922 +
Alignment location	CDS_12212:4013..5000 +
Alignment location	CDS_12212:5137..5219 +
Alignment location	CDS_12212:5299..5320 +
Alignment location	CDS_12212:5481..5561 +
Alignment location	jgi.p\|Nanoce1779_2\|616979:9926..10916 -
Alignment location	jgi.p\|Nanoce1779_2\|616979:9926..10916 -
Alignment location	CDS_12213:10112..10609 -
Alignment location	jgi.p\|Nanoce1779_2\|616984:13397..14109 -
Alignment location	jgi.p\|Nanoce1779_2\|616984:13397..14109 -
Alignment location	CDS_12214:13803..14075 -
Alignment location	jgi.p\|Nanoce1779_2\|616986:14227..16404 +
Alignment location	jgi.p\|Nanoce1779_2\|616986:14227..16404 +
Alignment location	CDS_12215:14972..15463 +
Alignment location	jgi.p\|Nanoce1779_2\|617007:25070..26753 +
Alignment location	jgi.p\|Nanoce1779_2\|617007:25070..26753 +
Alignment location	CDS_12218:25097..26452 +
Alignment location	jgi.p\|Nanoce1779_2\|617010:27640..30207 -
Alignment location	jgi.p\|Nanoce1779_2\|617010:27640..30207 -
Alignment location	CDS_12219:28076..30079 -
Alignment location	jgi.p\|Nanoce1779_2\|617018:30413..33882 -
Alignment location	jgi.p\|Nanoce1779_2\|617018:30413..33882 -
Alignment location	CDS_12220:33726..33869 -
Alignment location	CDS_12220:33428..33515 -
Alignment location	CDS_12220:33112..33228 -
Alignment location	CDS_12220:32943..32964 -
Alignment location	CDS_12220:32713..32833 -
Alignment location	CDS_12220:31986..32313 -
Alignment location	CDS_12220:31754..31815 -
Alignment location	CDS_12220:31379..31510 -
Alignment location	CDS_12220:30941..31156 -
Alignment location	jgi.p\|Nanoce1779_2\|644232:23501..24653 +
Alignment location	jgi.p\|Nanoce1779_2\|644232:23501..24653 +
Alignment location	CDS_12217:23501..23562 +
Alignment location	CDS_12217:23798..23904 +
Alignment location	CDS_12217:24116..24192 +
Alignment location	CDS_12217:24501..24653 +
Alignment location	jgi.p\|Nanoce1779_2\|675619:16417..23051 -
Alignment location	jgi.p\|Nanoce1779_2\|675619:16417..23051 -
Alignment location	CDS_12216:23001..23051 -
Alignment location	CDS_12216:22119..22192 -
Alignment location	CDS_12216:21755..21890 -
Alignment location	CDS_12216:21486..21542 -
Alignment location	CDS_12216:21249..21324 -
Alignment location	CDS_12216:21007..21097 -
Alignment location	CDS_12216:20702..20864 -
Alignment location	CDS_12216:20359..20469 -
Alignment location	CDS_12216:20069..20192 -
Alignment location	CDS_12216:19652..19936 -
Alignment location	CDS_12216:19319..19485 -
Alignment location	CDS_12216:19067..19195 -
Alignment location	CDS_12216:18721..18905 -
Alignment location	CDS_12216:18411..18597 -
Alignment location	CDS_12216:18134..18211 -
Alignment location	CDS_12216:17854..17931 -
Alignment location	CDS_12216:17414..17617 -
Alignment location	CDS_12216:17058..17216 -
Alignment location	jgi.p\|Nanoce1779_2\|61186:2994..5561 +
Alignment location	jgi.p\|Nanoce1779_2\|616979:10112..10609 -
Alignment location	jgi.p\|Nanoce1779_2\|616984:13803..14075 -
Alignment location	jgi.p\|Nanoce1779_2\|616986:14972..15463 +
Alignment location	jgi.p\|Nanoce1779_2\|617007:25097..26452 +
Alignment location	jgi.p\|Nanoce1779_2\|617010:28076..30079 -
Alignment location	jgi.p\|Nanoce1779_2\|617018:30941..33869 -
Alignment location	jgi.p\|Nanoce1779_2\|644232:23501..24653 +
Alignment location	jgi.p\|Nanoce1779_2\|675619:17058..23051 -
Alignment location	ncniL013:2742..33882 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|61186	gene	jgi.p\|Nanoce1779_2\|61186:2741..5758 +
jgi.p\|Nanoce1779_2\|61186	mRNA	jgi.p\|Nanoce1779_2\|61186:2741..5758 +
CDS_12212	CDS	CDS_12212:2994..3023 +
CDS_12212	CDS	CDS_12212:3200..3454 +
CDS_12212	CDS	CDS_12212:3594..3922 +
CDS_12212	CDS	CDS_12212:4013..5000 +
CDS_12212	CDS	CDS_12212:5137..5219 +
CDS_12212	CDS	CDS_12212:5299..5320 +
CDS_12212	CDS	CDS_12212:5481..5561 +
jgi.p\|Nanoce1779_2\|616979	gene	jgi.p\|Nanoce1779_2\|616979:9926..10916 -
jgi.p\|Nanoce1779_2\|616979	mRNA	jgi.p\|Nanoce1779_2\|616979:9926..10916 -
CDS_12213	CDS	CDS_12213:10112..10609 -
jgi.p\|Nanoce1779_2\|616984	gene	jgi.p\|Nanoce1779_2\|616984:13397..14109 -
jgi.p\|Nanoce1779_2\|616984	mRNA	jgi.p\|Nanoce1779_2\|616984:13397..14109 -
CDS_12214	CDS	CDS_12214:13803..14075 -
jgi.p\|Nanoce1779_2\|616986	gene	jgi.p\|Nanoce1779_2\|616986:14227..16404 +
jgi.p\|Nanoce1779_2\|616986	mRNA	jgi.p\|Nanoce1779_2\|616986:14227..16404 +
CDS_12215	CDS	CDS_12215:14972..15463 +
jgi.p\|Nanoce1779_2\|617007	gene	jgi.p\|Nanoce1779_2\|617007:25070..26753 +
jgi.p\|Nanoce1779_2\|617007	mRNA	jgi.p\|Nanoce1779_2\|617007:25070..26753 +
CDS_12218	CDS	CDS_12218:25097..26452 +
jgi.p\|Nanoce1779_2\|617010	gene	jgi.p\|Nanoce1779_2\|617010:27640..30207 -
jgi.p\|Nanoce1779_2\|617010	mRNA	jgi.p\|Nanoce1779_2\|617010:27640..30207 -
CDS_12219	CDS	CDS_12219:28076..30079 -
jgi.p\|Nanoce1779_2\|617018	gene	jgi.p\|Nanoce1779_2\|617018:30413..33882 -
jgi.p\|Nanoce1779_2\|617018	mRNA	jgi.p\|Nanoce1779_2\|617018:30413..33882 -
CDS_12220	CDS	CDS_12220:33726..33869 -
CDS_12220	CDS	CDS_12220:33428..33515 -
CDS_12220	CDS	CDS_12220:33112..33228 -
CDS_12220	CDS	CDS_12220:32943..32964 -
CDS_12220	CDS	CDS_12220:32713..32833 -
CDS_12220	CDS	CDS_12220:31986..32313 -
CDS_12220	CDS	CDS_12220:31754..31815 -
CDS_12220	CDS	CDS_12220:31379..31510 -
CDS_12220	CDS	CDS_12220:30941..31156 -
jgi.p\|Nanoce1779_2\|644232	gene	jgi.p\|Nanoce1779_2\|644232:23501..24653 +
jgi.p\|Nanoce1779_2\|644232	mRNA	jgi.p\|Nanoce1779_2\|644232:23501..24653 +
CDS_12217	CDS	CDS_12217:23501..23562 +
CDS_12217	CDS	CDS_12217:23798..23904 +
CDS_12217	CDS	CDS_12217:24116..24192 +
CDS_12217	CDS	CDS_12217:24501..24653 +
jgi.p\|Nanoce1779_2\|675619	gene	jgi.p\|Nanoce1779_2\|675619:16417..23051 -
jgi.p\|Nanoce1779_2\|675619	mRNA	jgi.p\|Nanoce1779_2\|675619:16417..23051 -
CDS_12216	CDS	CDS_12216:23001..23051 -
CDS_12216	CDS	CDS_12216:22119..22192 -
CDS_12216	CDS	CDS_12216:21755..21890 -
CDS_12216	CDS	CDS_12216:21486..21542 -
CDS_12216	CDS	CDS_12216:21249..21324 -
CDS_12216	CDS	CDS_12216:21007..21097 -
CDS_12216	CDS	CDS_12216:20702..20864 -
CDS_12216	CDS	CDS_12216:20359..20469 -
CDS_12216	CDS	CDS_12216:20069..20192 -
CDS_12216	CDS	CDS_12216:19652..19936 -
CDS_12216	CDS	CDS_12216:19319..19485 -
CDS_12216	CDS	CDS_12216:19067..19195 -
CDS_12216	CDS	CDS_12216:18721..18905 -
CDS_12216	CDS	CDS_12216:18411..18597 -
CDS_12216	CDS	CDS_12216:18134..18211 -
CDS_12216	CDS	CDS_12216:17854..17931 -
CDS_12216	CDS	CDS_12216:17414..17617 -
CDS_12216	CDS	CDS_12216:17058..17216 -
jgi.p\|Nanoce1779_2\|61186	polypeptide	jgi.p\|Nanoce1779_2\|61186:2994..5561 +
jgi.p\|Nanoce1779_2\|616979	polypeptide	jgi.p\|Nanoce1779_2\|616979:10112..10609 -
jgi.p\|Nanoce1779_2\|616984	polypeptide	jgi.p\|Nanoce1779_2\|616984:13803..14075 -
jgi.p\|Nanoce1779_2\|616986	polypeptide	jgi.p\|Nanoce1779_2\|616986:14972..15463 +
jgi.p\|Nanoce1779_2\|617007	polypeptide	jgi.p\|Nanoce1779_2\|617007:25097..26452 +
jgi.p\|Nanoce1779_2\|617010	polypeptide	jgi.p\|Nanoce1779_2\|617010:28076..30079 -
jgi.p\|Nanoce1779_2\|617018	polypeptide	jgi.p\|Nanoce1779_2\|617018:30941..33869 -
jgi.p\|Nanoce1779_2\|644232	polypeptide	jgi.p\|Nanoce1779_2\|644232:23501..24653 +
jgi.p\|Nanoce1779_2\|675619	polypeptide	jgi.p\|Nanoce1779_2\|675619:17058..23051 -
ncniL013	syntenic_region	ncniL013:2742..33882 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications