jgi.p|Nanoce1779_2|616979, mRNA_12213 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|616979
Unique Name	mRNA_12213
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	920
Alignment location	scaffold_128:9926..10916 -

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Properties


Property Name	Value
TranscriptId	617065
Track	FilteredModels2
ProteinId	616979

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_128	supercontig	scaffold_128:9926..10916 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616979	gene_12213	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616979	mRNA_12213-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12213	CDS_12213	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_128:9926..10916-
coding sequence from alignment at scaffold_128:9926..10916-

mRNA sequence

>mRNA_12213 ID=mRNA_12213|Name=jgi.p|Nanoce1779_2|616979|organism=Nannochloropsis oceanica|type=mRNA|length=920bp
GAGGGAGGGTGTGGGGAGGTTTTGTCTCCATCTCCTCTCGGGAGTGGGAG
GAGGCAGGAAAGGAGGGGGAAAGGGGAGGAGTGGGGGAGGAGGAAGGGAG
GAGGAGGCTGGTGGTGCGGAAGCTGGAGGATGAGGGGATTGACCCCCAGG
TGTACTTTGACTGTTGTAGGAAGGAGGGAGGGGAGAAAAGATGAATGAAG
GGAAATTGAAACCATGAGAGTAAGAATCAAATATGGATGTGTAGTGTGCG
GGAGCAACCCGCCTGTCGTTGTTTCCTCTTGCCTTCTTTTCTTCTGCGTC
GTTATCAATGGCACTCTGCTTGTTGGCAGCCGCGGCATTTAAAATTCGAC
TGCCGTTGCTGCTGTTGCTGCTGTCAAATACCTTTAGCATCACAAGTTTC
TCTCTTTGCTACATCCTCACGTGGTGCAGTCATGGTCTTAAGCCTCTTCC
TCCATGTCCCTCCCTCGTCTGGTCCTCATCCTCGTCCTCGTCTTCTCTAC
ATTTCCCTCTTGCGTGTTACTATTCATCGTGGTGCTTTCTGAAAATATGC
AGCCACCTGTCCCTCCTTCCGTTCCCACTGCCTCCATCCCCCCCCCTCCC
TCGCTTTCCTTCTCTCCCCCTTCATATCATCATCGTTTTTGCCTGTCTTC
CTCGACCCTTCTCGGGAGGGGAAAACTTTCTCCCCTCACATAAAGGCTCT
TGCTCTCGGAGAGGGCTCTCGTTCTCGCGCCCTATCAGGTCCCTCCCACC
CTCCCTCCCTACCTCCTGGTGCTCGATCGTAAACTCCTTTTTCTCTATCA
ATTAGGCTACTCCTCTCTCCTCTACCACCTGCCCCTCCTCGTCCTCGTCC
TCGTCCTCGGGCGGGAAGACGCGTGGATACAAAACTTCCTCCCTTGCATC
CTCCATCATTTTCAAGACTT

protein sequence of jgi.p|Nanoce1779_2|616979

>mRNA_12213-protein ID=mRNA_12213-protein|Name=jgi.p|Nanoce1779_2|616979|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MALCLLAAAAFKIRLPLLLLLLSNTFSITSFSLCYILTWCSHGLKPLPPC
PSLVWSSSSSSSSLHFPLACYYSSWCFLKICSHLSLLPFPLPPSPPLPRF
PSLPLHIIIVFACLPRPFSGGENFLPSHKGSCSRRGLSFSRPIRSLPPSL
PTSWCSIVNSFFSIN*

mRNA from alignment at scaffold_128:9926..10916-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12213 ID=mRNA_12213|Name=jgi.p|Nanoce1779_2|616979|organism=Nannochloropsis oceanica|type=mRNA|length=991bp|location=Sequence derived from alignment at scaffold_128:9926..10916- (Nannochloropsis oceanica)
GAGGGAGGGTGTGGGGAGGTTTTGTCTCCATCTCCTCTCGGGAGTGGGAG
GAGGCAGGAAAGGAGGGGGAAAGGGGAGGAGTGGGGGAGGAGGAAGGGAG
GAGGAGGCTGGTGGTGCGGAAGCTGGAGGATGAGGGGATTGACCCCCAGG
TGTACTTTGACTGTTGTAGGAAGGAGGGAGGGGAGAAAAGATGAATGAAG
GGAAATTGAAACCATGAGAGTAAGAATCAAATATGGATGTGTAGTGTGCG
GGAGCAACCCGCCTGTCGTTGTTTCCTCTTGCCTTCTTTTCTTCTGCGTC
GTTATCAATGGCACTCTGCTTGTTGGCAGCCGCGGCATTTAAAATTCGAC
TGCCGTTGCTGCTGTTGCTGCTGTCAAATACCTTTAGCATCACAAGTTTC
TCTCTTTGCTACATCCTCACGTGGTGCAGTCATGGTCTTAAGCCTCTTCC
TCCATGTCCCTCCCTCGTCTGGTCCTCATCCTCGTCCTCGTCTTCTCTAC
ATTTCCCTCTTGCGTGTTACTATTCATCGTGGTGCTTTCTGAAAATATGC
AGCCACCTGTCCCTCCTTCCGTTCCCACTGCCTCCATCCCCCCCCCTCCC
TCGCTTTCCTTCTCTCCCCCTTCATATCATCATCGTTTTTGCCTGTCTTC
CTCGACCCTTCTCGGGAGGGGAAAACTTTCTCCCCTCACATAAAGGCTCT
TGCTCTCGGAGAGGGCTCTCGTTCTCGCGCCCTATCAGGTCCCTCCCACC
CTCCCTCCCTACCTCCTGGTGCTCGATCGTAAACTCCTTTTTCTCTATCA
ATTAGGCTACTCCTCTCTCCTCTACCACCTGCCCCTCCTCGTCCTCGTCC
TCGTCCTCGGGCGGGAAGACGCGTGGATACAAAACTGTATGGGAAACAAG
AAAAAAAAAATCAGTCGAAACACTCCCTCCTTCCCTCCCTACCTCCCCTG
CTCACCTTCCTCCCTTGCATCCTCCATCATTTTCAAGACTT

Coding sequence (CDS) from alignment at scaffold_128:9926..10916-

>mRNA_12213 ID=mRNA_12213|Name=jgi.p|Nanoce1779_2|616979|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_128:9926..10916- (Nannochloropsis oceanica)
ATGGCACTCTGCTTGTTGGCAGCCGCGGCATTTAAAATTCGACTGCCGTT
GCTGCTGTTGCTGCTGTCAAATACCTTTAGCATCACAAGTTTCTCTCTTT
GCTACATCCTCACGTGGTGCAGTCATGGTCTTAAGCCTCTTCCTCCATGT
CCCTCCCTCGTCTGGTCCTCATCCTCGTCCTCGTCTTCTCTACATTTCCC
TCTTGCGTGTTACTATTCATCGTGGTGCTTTCTGAAAATATGCAGCCACC
TGTCCCTCCTTCCGTTCCCACTGCCTCCATCCCCCCCCCTCCCTCGCTTT
CCTTCTCTCCCCCTTCATATCATCATCGTTTTTGCCTGTCTTCCTCGACC
CTTCTCGGGAGGGGAAAACTTTCTCCCCTCACATAAAGGCTCTTGCTCTC
GGAGAGGGCTCTCGTTCTCGCGCCCTATCAGGTCCCTCCCACCCTCCCTC
CCTACCTCCTGGTGCTCGATCGTAAACTCCTTTTTCTCTATCAATTAG

Synonyms

Publications