jgi.p|Nanoce1779_2|617007, mRNA_12218 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|617007
Unique Name	mRNA_12218
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1684
Alignment location	scaffold_128:25070..26753 +

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Properties


Property Name	Value
TranscriptId	617093
Track	FilteredModels2
ProteinId	617007

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_128	supercontig	scaffold_128:25070..26753 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|617007	gene_12218	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|617007	mRNA_12218-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12218	CDS_12218	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_128:25070..26753+
coding sequence from alignment at scaffold_128:25070..26753+

mRNA sequence

>mRNA_12218 ID=mRNA_12218|Name=jgi.p|Nanoce1779_2|617007|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp
AGGTACAGTTACCGCAAAATCTTAGCCATGATGCGTGCCGTGACTTCGTC
GTCCCGTGGCCTGAACCGGCGCCTGTCTTCATCTTCGTCCAACTCGTCCT
TCAGCCGCCGCCTCCCCTCAAGCGTGTTCCGAGGCGGCTATAGTGCCACA
ACAACTCATGGCGGTCAAATATCTCTTCGCTTAGCAGCCGCATCGTTTAG
TTCTCATATAGATAAATTTTCTTATCAGCAAAAGGCCTGTCGAGGCAGTG
CCGAGGCATCGCGCCATCAAGAGCGCCAGAAGGAGACACTACCCTCCGAA
GCCGCAGTGAAGCAAGCGGCAGATCTCGTCCCTAATCCTGCACCAGCCTC
CCCAGGCCCCCTAGCTCCTCCTTCCCGCAGGCAATCCTCTGCATCCCCTC
CACAAGGCTTGATTCCATTCACCCTCCTTCCCCTCGATCTCGGGACCTAC
CACAGTCTCCTCTCCCGTTCTTCCACCATGCCGTCGGAAGCCCTTGTCCT
CTTGCAAGAAATGCAGGAGCTTGGCTTGACGGTGGACCCGCCAGCATTAC
TCAGTGCTATGCGCATCTGTGGTCGCCATCCAGCCTATTTGCAGCAGTGT
TTGAAGCTGCATGACCAGGTCATGTCTTTTCCTTTGCTCTGTGCGTCTCC
CTCATTCTTCTCTTCTTCACCCCTCGTCCAAACCAGCGCCAATAACAAGA
CGCATTTCATCACAACAAGCTATGCCCTTGTCCTCTCTGCCTGTCTCCGC
GCAGGGGGCTCGCAAGGCTACGACGCTGCCCATCTCTTCCTAGAGCAAAT
GAAGGAAGGTAAGGTAGCACCAACTCTACTCATGTATAGCGAGCTGGCCA
AGGCATGCTTGGTGGTGATAGAGGACAAGAGAGAGAGGGATGATGAAAGG
GAAGAGGAAGCAAGGAGGGCATTGAAGGTATTTCAAGAGGTGATGGCCAT
GATTCCTGCGGAAGAGGAGGGGAAAAGTGGAGGAGGAAAGGCAGCAGAGA
CAAAAGGCCCAGACAGTGCCCTTCTTTCTTCCTCTGTCCCTTCTACATAT
GGGGTTACATGTGGGAAGCAGCTTAATGTGAAATGTAAAAGCGAGTCAGA
GGCCCAATGGGTACATGAGCTTATAGCCTTGAAAGCAAGGGGGGACGTGG
GACAGGCCCTCGTTATCCTTGCACAGGGACTAACGGCCTTCTGTAGCAGT
GAGACGGAGGGAGGGAGGGAGGGAGAAAAGGAGGAGGAGGCTGTACCGTT
CGCATGTAATGTGGTATTAAGCACGTGCATCAGAACCGAAAGGTGGAAAG
AGGCAGGGCAGGTGAGTGAAGAAGGAAGAAGGGAAGGGAAAAGGGATGCT
GGTACAGCCGTTTGTTTCACGCATTCAACCTAACTTGCCTCTCCCAAACA
TCCCTCCCCTCCGTTCCCACATCTCTCTCTCCTCCCCTGGTTGCCATCCT
CCCCCCCTCCCCTCTTTCCCCTGTCCTTACTACCCTCCTGCAGGTGAGAG
ACCTGATGCAGGGCCTTGGGGTGCCTCCAGACGCCTTCACCCTCAACAGC
CTCCTCGCCCACTCTCTCCGCCAGCACCAGCACCAGCACCAGCAGGCGCC
GTACCATCACAACCACCATCACCACAAAGGGCACCATCTTAATCAGCAGC
AGCAGGAAATCTTCAGCCCCTCCCTCCCACCCCC

protein sequence of jgi.p|Nanoce1779_2|617007

>mRNA_12218-protein ID=mRNA_12218-protein|Name=jgi.p|Nanoce1779_2|617007|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MMRAVTSSSRGLNRRLSSSSSNSSFSRRLPSSVFRGGYSATTTHGGQISL
RLAAASFSSHIDKFSYQQKACRGSAEASRHQERQKETLPSEAAVKQAADL
VPNPAPASPGPLAPPSRRQSSASPPQGLIPFTLLPLDLGTYHSLLSRSST
MPSEALVLLQEMQELGLTVDPPALLSAMRICGRHPAYLQQCLKLHDQVMS
FPLLCASPSFFSSSPLVQTSANNKTHFITTSYALVLSACLRAGGSQGYDA
AHLFLEQMKEGKVAPTLLMYSELAKACLVVIEDKRERDDEREEEARRALK
VFQEVMAMIPAEEEGKSGGGKAAETKGPDSALLSSSVPSTYGVTCGKQLN
VKCKSESEAQWVHELIALKARGDVGQALVILAQGLTAFCSSETEGGREGE
KEEEAVPFACNVVLSTCIRTERWKEAGQVSEEGRREGKRDAGTAVCFTHS
T*

mRNA from alignment at scaffold_128:25070..26753+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12218 ID=mRNA_12218|Name=jgi.p|Nanoce1779_2|617007|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp|location=Sequence derived from alignment at scaffold_128:25070..26753+ (Nannochloropsis oceanica)
AGGTACAGTTACCGCAAAATCTTAGCCATGATGCGTGCCGTGACTTCGTC
GTCCCGTGGCCTGAACCGGCGCCTGTCTTCATCTTCGTCCAACTCGTCCT
TCAGCCGCCGCCTCCCCTCAAGCGTGTTCCGAGGCGGCTATAGTGCCACA
ACAACTCATGGCGGTCAAATATCTCTTCGCTTAGCAGCCGCATCGTTTAG
TTCTCATATAGATAAATTTTCTTATCAGCAAAAGGCCTGTCGAGGCAGTG
CCGAGGCATCGCGCCATCAAGAGCGCCAGAAGGAGACACTACCCTCCGAA
GCCGCAGTGAAGCAAGCGGCAGATCTCGTCCCTAATCCTGCACCAGCCTC
CCCAGGCCCCCTAGCTCCTCCTTCCCGCAGGCAATCCTCTGCATCCCCTC
CACAAGGCTTGATTCCATTCACCCTCCTTCCCCTCGATCTCGGGACCTAC
CACAGTCTCCTCTCCCGTTCTTCCACCATGCCGTCGGAAGCCCTTGTCCT
CTTGCAAGAAATGCAGGAGCTTGGCTTGACGGTGGACCCGCCAGCATTAC
TCAGTGCTATGCGCATCTGTGGTCGCCATCCAGCCTATTTGCAGCAGTGT
TTGAAGCTGCATGACCAGGTCATGTCTTTTCCTTTGCTCTGTGCGTCTCC
CTCATTCTTCTCTTCTTCACCCCTCGTCCAAACCAGCGCCAATAACAAGA
CGCATTTCATCACAACAAGCTATGCCCTTGTCCTCTCTGCCTGTCTCCGC
GCAGGGGGCTCGCAAGGCTACGACGCTGCCCATCTCTTCCTAGAGCAAAT
GAAGGAAGGTAAGGTAGCACCAACTCTACTCATGTATAGCGAGCTGGCCA
AGGCATGCTTGGTGGTGATAGAGGACAAGAGAGAGAGGGATGATGAAAGG
GAAGAGGAAGCAAGGAGGGCATTGAAGGTATTTCAAGAGGTGATGGCCAT
GATTCCTGCGGAAGAGGAGGGGAAAAGTGGAGGAGGAAAGGCAGCAGAGA
CAAAAGGCCCAGACAGTGCCCTTCTTTCTTCCTCTGTCCCTTCTACATAT
GGGGTTACATGTGGGAAGCAGCTTAATGTGAAATGTAAAAGCGAGTCAGA
GGCCCAATGGGTACATGAGCTTATAGCCTTGAAAGCAAGGGGGGACGTGG
GACAGGCCCTCGTTATCCTTGCACAGGGACTAACGGCCTTCTGTAGCAGT
GAGACGGAGGGAGGGAGGGAGGGAGAAAAGGAGGAGGAGGCTGTACCGTT
CGCATGTAATGTGGTATTAAGCACGTGCATCAGAACCGAAAGGTGGAAAG
AGGCAGGGCAGGTGAGTGAAGAAGGAAGAAGGGAAGGGAAAAGGGATGCT
GGTACAGCCGTTTGTTTCACGCATTCAACCTAACTTGCCTCTCCCAAACA
TCCCTCCCCTCCGTTCCCACATCTCTCTCTCCTCCCCTGGTTGCCATCCT
CCCCCCCTCCCCTCTTTCCCCTGTCCTTACTACCCTCCTGCAGGTGAGAG
ACCTGATGCAGGGCCTTGGGGTGCCTCCAGACGCCTTCACCCTCAACAGC
CTCCTCGCCCACTCTCTCCGCCAGCACCAGCACCAGCACCAGCAGGCGCC
GTACCATCACAACCACCATCACCACAAAGGGCACCATCTTAATCAGCAGC
AGCAGGAAATCTTCAGCCCCTCCCTCCCACCCCC

Coding sequence (CDS) from alignment at scaffold_128:25070..26753+

>mRNA_12218 ID=mRNA_12218|Name=jgi.p|Nanoce1779_2|617007|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_128:25070..26753+ (Nannochloropsis oceanica)
ATGATGCGTGCCGTGACTTCGTCGTCCCGTGGCCTGAACCGGCGCCTGTC
TTCATCTTCGTCCAACTCGTCCTTCAGCCGCCGCCTCCCCTCAAGCGTGT
TCCGAGGCGGCTATAGTGCCACAACAACTCATGGCGGTCAAATATCTCTT
CGCTTAGCAGCCGCATCGTTTAGTTCTCATATAGATAAATTTTCTTATCA
GCAAAAGGCCTGTCGAGGCAGTGCCGAGGCATCGCGCCATCAAGAGCGCC
AGAAGGAGACACTACCCTCCGAAGCCGCAGTGAAGCAAGCGGCAGATCTC
GTCCCTAATCCTGCACCAGCCTCCCCAGGCCCCCTAGCTCCTCCTTCCCG
CAGGCAATCCTCTGCATCCCCTCCACAAGGCTTGATTCCATTCACCCTCC
TTCCCCTCGATCTCGGGACCTACCACAGTCTCCTCTCCCGTTCTTCCACC
ATGCCGTCGGAAGCCCTTGTCCTCTTGCAAGAAATGCAGGAGCTTGGCTT
GACGGTGGACCCGCCAGCATTACTCAGTGCTATGCGCATCTGTGGTCGCC
ATCCAGCCTATTTGCAGCAGTGTTTGAAGCTGCATGACCAGGTCATGTCT
TTTCCTTTGCTCTGTGCGTCTCCCTCATTCTTCTCTTCTTCACCCCTCGT
CCAAACCAGCGCCAATAACAAGACGCATTTCATCACAACAAGCTATGCCC
TTGTCCTCTCTGCCTGTCTCCGCGCAGGGGGCTCGCAAGGCTACGACGCT
GCCCATCTCTTCCTAGAGCAAATGAAGGAAGGTAAGGTAGCACCAACTCT
ACTCATGTATAGCGAGCTGGCCAAGGCATGCTTGGTGGTGATAGAGGACA
AGAGAGAGAGGGATGATGAAAGGGAAGAGGAAGCAAGGAGGGCATTGAAG
GTATTTCAAGAGGTGATGGCCATGATTCCTGCGGAAGAGGAGGGGAAAAG
TGGAGGAGGAAAGGCAGCAGAGACAAAAGGCCCAGACAGTGCCCTTCTTT
CTTCCTCTGTCCCTTCTACATATGGGGTTACATGTGGGAAGCAGCTTAAT
GTGAAATGTAAAAGCGAGTCAGAGGCCCAATGGGTACATGAGCTTATAGC
CTTGAAAGCAAGGGGGGACGTGGGACAGGCCCTCGTTATCCTTGCACAGG
GACTAACGGCCTTCTGTAGCAGTGAGACGGAGGGAGGGAGGGAGGGAGAA
AAGGAGGAGGAGGCTGTACCGTTCGCATGTAATGTGGTATTAAGCACGTG
CATCAGAACCGAAAGGTGGAAAGAGGCAGGGCAGGTGAGTGAAGAAGGAA
GAAGGGAAGGGAAAAGGGATGCTGGTACAGCCGTTTGTTTCACGCATTCA
ACCTAA

Synonyms

Publications