jgi.p|Nanoce1779_2|617010, mRNA_12219 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|617010
Unique Name	mRNA_12219
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2568
Alignment location	scaffold_128:27640..30207 -

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Properties


Property Name	Value
TranscriptId	617096
Track	FilteredModels2
ProteinId	617010

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_128	supercontig	scaffold_128:27640..30207 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|617010	gene_12219	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|617010	mRNA_12219-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12219	CDS_12219	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_128:27640..30207-
coding sequence from alignment at scaffold_128:27640..30207-

mRNA sequence

>mRNA_12219 ID=mRNA_12219|Name=jgi.p|Nanoce1779_2|617010|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp
ACAGCGAGCAAGGCATGCAGCAGACAAGTCGTAAGCTCTCGAGCCCGCAT
CATCAGCCATCCGATTCCCCTCCTCTTTTTTGATGCCCACCACTATCCCA
CGCTCATCATCAACTGGCTTGCAAATTCATGACTATTGAGGAGAGCATGG
TTGAGGAGAGCATTGTTAAAAGCATCGTGTCGATCGAAATATGTAAAGAC
GGGGTCTTTACCTTAGACAAGCAGCAGCAACAGCAACAGCAAGACATGCG
AGAGCGAATTCAAGAGCAAGCATTGAAGGAGCAGCGGCCAGGGGAGGAGC
AGCAGCAACAAGTTGGGCAAACCGAGGGGGAGAAGCAAACCGCAGAATTT
CTCCTCCTCCGGCGAGCACGTCGTTCCAAATGTGTTTCTGGACCTGTAGA
GGGGCCTTGGGCTGGCATGAAAGGGTGGGAGTGCCGTTCAATGAGCGTAG
AAGTGGCCAAGATGCTGCTCAAAATGGAGAAAGGCCAGCTAGGCGAGGAC
TTACGACAGTGCAATCTGGCGGCGCGGGCCCGGAGGGCGGCGGTGCGGGA
GGAGATGATTCTAGTGACGACAGAGGAGGCAGAGATGGTGGACCAAGCCC
GGGTGCTAGTGCTGGCCGAGGAGACTGAGAAGCAGGAAAAGAGCGCCCTG
CCGCTGTCGCCGACGAAGATCAAGACGAAGACGCAGAATATAGCAGTAAC
CGCAACGGGCTCCCCGGTAGCCATGGATGTGGGAGGTCTGTCGGGCAGCA
GCAGCTGTAGCAACAAGCTCCCGCCTATCCCCTTGCCCCCAACTGAGGCC
CTGGTGGAGGAGCGACCAGTGAGCAAGGCCTTGATGGCATGCGTAATGGC
CCGGGAAGCCAAGTCCCGCTTCGCCGCCGCCGCCTCCGCAGCAGCAGCAG
CCGCGCCTGGTGGAGGAAATGCAGCAACAGCAAAGGACGCAGCATCAGCA
GTAGTAGCAGTAGTAGCACCATCTGCATTACCGAGGGGGTCGCTTGTGGG
GCGGGTGCAGGCGGCTTACTTCAAGCAGGTGCCCGTGAAGGTGACGATGG
AAGAGGCAAGGCAGTTGGATGAGCTCGCCGTGGAAGAGGCGGAGATGGTG
GAGAAGGAGAGGCTGAAAAAGGATAGGGAGCAGCGGCAGCAGCCGCTCCA
GCAGCGGCTGCAGCAGGAAAAGGAGTTGGCAGCGCTGGCGGCGGCAATGA
AGGAGAAGGAGAAGGAGAAGGCCACGGTGTCACTGCGTGGGGAGGTTGGG
GTAAAGGAGGAGAGGATGATGCAGCTGCTGAACATAAATGACAAGGCGGT
CGACGAGAAGGAACAGGGCGAAGGAGGGAGGGAAGAACAAGTGCGGGCGG
GGAGAGGGGAGGAGATTAGTCGAAAGCGAACAGCCTGTGCTGCCTCTGGC
CAGGCCTCCTTTGAACAGGAAAGCGGACGCACCAGCGACCTTACCGCGAC
AGCAACAAACCCCTCTTCCTTCCCCTCATCCCCCAAGACCACCCTCGCAG
AGGACGGAGGCGAGATCGTGCGTGTCTCGCCCGAGCTGTGCCGTGCCCTA
ATGACGCTCTGCCCCAACGCGGCTCGGGACTCGCTCACCGCCAAGGTCCA
GTCGGCAGTCATGTCGCAGAAGGATAGCTTGCACCTCCCTCCCCCACTCC
CTCCCTCGTCTTCCCCGGGCTTGAGGCCGGCGGAGCGCGTGCTGCTGGCC
CAGGCGCAGGCCATGGTGGAAGAGGGCTTGTTGGAGCCCGGCATGAAAGC
CGAGAGGAAGAAGAAGGTGAAGCTGCTGGCGACTGGCCAGGCCATAAAGG
AGAATGGGCTGGAGGGGAAAAGAGGGAGTGAAGGAGATGGAGGAGAAGAA
AGTAAAGGAGAAGGAGGGACAGGGTTGTTTTCTGTGTTGCTTACGCGGGA
GGGGATCGGGGCGGTGCAGGCATGGGAGGCCAAGGCAGGGGAGAAAGTGA
CGAGCTCCTCTCTTTCCTCGCGACTTATGGCCTTGTTCACGCGACAGATT
ACTGTCTTCCGTACGGACGACGCGCAGGAGGCAAGAAAGGTGGAGGAGGC
CGAGAGGGAGGGGGAGGGTAAGCGCCAGAGGCGGGAGGCAGCCCTGCGGA
TTCAGCAGAAGCAGACGGGAATGAAGGAGTGAGAGAAGGAGGAAGGGGAA
AGGGGGGAAAGAAGGAGGGACAGGGCATTAAGGCAATTGCCGGGGTTGGT
GGTATAGCTCTGTCAATGGATGAGAATTGATGATTGGGAGACGTTGAGAG
GGGAGGGAGGGAGGGCGGAAACAAGAATGAGAGAAGAGGAGGACTGGTGT
TTATGCGGATGTAGTAAAGCGGTGTGGTAGTAGAAAGGGACTGAGGAGGA
GGACGAATGAGGGATGAAGGAAAATAGGTAGGAGGGCATTGATGGTCAAC
AGTCGTGCAGAGATTTTTGCCTCTCAGATGGAGAAGAGCTCCGGGGGTGC
GAGAATTTGGTAGACAGCCGTGACCGGCCTTGTGGAAGAGGTCCTATGCG
CTGGCACGTGTGCGTGAAGGAGGAGATGGGAAGAGGATGAATGGGGGGAT
GGATGTGTATTGAGCGCG

protein sequence of jgi.p|Nanoce1779_2|617010

>mRNA_12219-protein ID=mRNA_12219-protein|Name=jgi.p|Nanoce1779_2|617010|organism=Nannochloropsis oceanica|type=polypeptide|length=668bp
MTIEESMVEESIVKSIVSIEICKDGVFTLDKQQQQQQQDMRERIQEQALK
EQRPGEEQQQQVGQTEGEKQTAEFLLLRRARRSKCVSGPVEGPWAGMKGW
ECRSMSVEVAKMLLKMEKGQLGEDLRQCNLAARARRAAVREEMILVTTEE
AEMVDQARVLVLAEETEKQEKSALPLSPTKIKTKTQNIAVTATGSPVAMD
VGGLSGSSSCSNKLPPIPLPPTEALVEERPVSKALMACVMAREAKSRFAA
AASAAAAAAPGGGNAATAKDAASAVVAVVAPSALPRGSLVGRVQAAYFKQ
VPVKVTMEEARQLDELAVEEAEMVEKERLKKDREQRQQPLQQRLQQEKEL
AALAAAMKEKEKEKATVSLRGEVGVKEERMMQLLNINDKAVDEKEQGEGG
REEQVRAGRGEEISRKRTACAASGQASFEQESGRTSDLTATATNPSSFPS
SPKTTLAEDGGEIVRVSPELCRALMTLCPNAARDSLTAKVQSAVMSQKDS
LHLPPPLPPSSSPGLRPAERVLLAQAQAMVEEGLLEPGMKAERKKKVKLL
ATGQAIKENGLEGKRGSEGDGGEESKGEGGTGLFSVLLTREGIGAVQAWE
AKAGEKVTSSSLSSRLMALFTRQITVFRTDDAQEARKVEEAEREGEGKRQ
RREAALRIQQKQTGMKE*

mRNA from alignment at scaffold_128:27640..30207-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12219 ID=mRNA_12219|Name=jgi.p|Nanoce1779_2|617010|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp|location=Sequence derived from alignment at scaffold_128:27640..30207- (Nannochloropsis oceanica)
ACAGCGAGCAAGGCATGCAGCAGACAAGTCGTAAGCTCTCGAGCCCGCAT
CATCAGCCATCCGATTCCCCTCCTCTTTTTTGATGCCCACCACTATCCCA
CGCTCATCATCAACTGGCTTGCAAATTCATGACTATTGAGGAGAGCATGG
TTGAGGAGAGCATTGTTAAAAGCATCGTGTCGATCGAAATATGTAAAGAC
GGGGTCTTTACCTTAGACAAGCAGCAGCAACAGCAACAGCAAGACATGCG
AGAGCGAATTCAAGAGCAAGCATTGAAGGAGCAGCGGCCAGGGGAGGAGC
AGCAGCAACAAGTTGGGCAAACCGAGGGGGAGAAGCAAACCGCAGAATTT
CTCCTCCTCCGGCGAGCACGTCGTTCCAAATGTGTTTCTGGACCTGTAGA
GGGGCCTTGGGCTGGCATGAAAGGGTGGGAGTGCCGTTCAATGAGCGTAG
AAGTGGCCAAGATGCTGCTCAAAATGGAGAAAGGCCAGCTAGGCGAGGAC
TTACGACAGTGCAATCTGGCGGCGCGGGCCCGGAGGGCGGCGGTGCGGGA
GGAGATGATTCTAGTGACGACAGAGGAGGCAGAGATGGTGGACCAAGCCC
GGGTGCTAGTGCTGGCCGAGGAGACTGAGAAGCAGGAAAAGAGCGCCCTG
CCGCTGTCGCCGACGAAGATCAAGACGAAGACGCAGAATATAGCAGTAAC
CGCAACGGGCTCCCCGGTAGCCATGGATGTGGGAGGTCTGTCGGGCAGCA
GCAGCTGTAGCAACAAGCTCCCGCCTATCCCCTTGCCCCCAACTGAGGCC
CTGGTGGAGGAGCGACCAGTGAGCAAGGCCTTGATGGCATGCGTAATGGC
CCGGGAAGCCAAGTCCCGCTTCGCCGCCGCCGCCTCCGCAGCAGCAGCAG
CCGCGCCTGGTGGAGGAAATGCAGCAACAGCAAAGGACGCAGCATCAGCA
GTAGTAGCAGTAGTAGCACCATCTGCATTACCGAGGGGGTCGCTTGTGGG
GCGGGTGCAGGCGGCTTACTTCAAGCAGGTGCCCGTGAAGGTGACGATGG
AAGAGGCAAGGCAGTTGGATGAGCTCGCCGTGGAAGAGGCGGAGATGGTG
GAGAAGGAGAGGCTGAAAAAGGATAGGGAGCAGCGGCAGCAGCCGCTCCA
GCAGCGGCTGCAGCAGGAAAAGGAGTTGGCAGCGCTGGCGGCGGCAATGA
AGGAGAAGGAGAAGGAGAAGGCCACGGTGTCACTGCGTGGGGAGGTTGGG
GTAAAGGAGGAGAGGATGATGCAGCTGCTGAACATAAATGACAAGGCGGT
CGACGAGAAGGAACAGGGCGAAGGAGGGAGGGAAGAACAAGTGCGGGCGG
GGAGAGGGGAGGAGATTAGTCGAAAGCGAACAGCCTGTGCTGCCTCTGGC
CAGGCCTCCTTTGAACAGGAAAGCGGACGCACCAGCGACCTTACCGCGAC
AGCAACAAACCCCTCTTCCTTCCCCTCATCCCCCAAGACCACCCTCGCAG
AGGACGGAGGCGAGATCGTGCGTGTCTCGCCCGAGCTGTGCCGTGCCCTA
ATGACGCTCTGCCCCAACGCGGCTCGGGACTCGCTCACCGCCAAGGTCCA
GTCGGCAGTCATGTCGCAGAAGGATAGCTTGCACCTCCCTCCCCCACTCC
CTCCCTCGTCTTCCCCGGGCTTGAGGCCGGCGGAGCGCGTGCTGCTGGCC
CAGGCGCAGGCCATGGTGGAAGAGGGCTTGTTGGAGCCCGGCATGAAAGC
CGAGAGGAAGAAGAAGGTGAAGCTGCTGGCGACTGGCCAGGCCATAAAGG
AGAATGGGCTGGAGGGGAAAAGAGGGAGTGAAGGAGATGGAGGAGAAGAA
AGTAAAGGAGAAGGAGGGACAGGGTTGTTTTCTGTGTTGCTTACGCGGGA
GGGGATCGGGGCGGTGCAGGCATGGGAGGCCAAGGCAGGGGAGAAAGTGA
CGAGCTCCTCTCTTTCCTCGCGACTTATGGCCTTGTTCACGCGACAGATT
ACTGTCTTCCGTACGGACGACGCGCAGGAGGCAAGAAAGGTGGAGGAGGC
CGAGAGGGAGGGGGAGGGTAAGCGCCAGAGGCGGGAGGCAGCCCTGCGGA
TTCAGCAGAAGCAGACGGGAATGAAGGAGTGAGAGAAGGAGGAAGGGGAA
AGGGGGGAAAGAAGGAGGGACAGGGCATTAAGGCAATTGCCGGGGTTGGT
GGTATAGCTCTGTCAATGGATGAGAATTGATGATTGGGAGACGTTGAGAG
GGGAGGGAGGGAGGGCGGAAACAAGAATGAGAGAAGAGGAGGACTGGTGT
TTATGCGGATGTAGTAAAGCGGTGTGGTAGTAGAAAGGGACTGAGGAGGA
GGACGAATGAGGGATGAAGGAAAATAGGTAGGAGGGCATTGATGGTCAAC
AGTCGTGCAGAGATTTTTGCCTCTCAGATGGAGAAGAGCTCCGGGGGTGC
GAGAATTTGGTAGACAGCCGTGACCGGCCTTGTGGAAGAGGTCCTATGCG
CTGGCACGTGTGCGTGAAGGAGGAGATGGGAAGAGGATGAATGGGGGGAT
GGATGTGTATTGAGCGCG

Coding sequence (CDS) from alignment at scaffold_128:27640..30207-

>mRNA_12219 ID=mRNA_12219|Name=jgi.p|Nanoce1779_2|617010|organism=Nannochloropsis oceanica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_128:27640..30207- (Nannochloropsis oceanica)
ATGACTATTGAGGAGAGCATGGTTGAGGAGAGCATTGTTAAAAGCATCGT
GTCGATCGAAATATGTAAAGACGGGGTCTTTACCTTAGACAAGCAGCAGC
AACAGCAACAGCAAGACATGCGAGAGCGAATTCAAGAGCAAGCATTGAAG
GAGCAGCGGCCAGGGGAGGAGCAGCAGCAACAAGTTGGGCAAACCGAGGG
GGAGAAGCAAACCGCAGAATTTCTCCTCCTCCGGCGAGCACGTCGTTCCA
AATGTGTTTCTGGACCTGTAGAGGGGCCTTGGGCTGGCATGAAAGGGTGG
GAGTGCCGTTCAATGAGCGTAGAAGTGGCCAAGATGCTGCTCAAAATGGA
GAAAGGCCAGCTAGGCGAGGACTTACGACAGTGCAATCTGGCGGCGCGGG
CCCGGAGGGCGGCGGTGCGGGAGGAGATGATTCTAGTGACGACAGAGGAG
GCAGAGATGGTGGACCAAGCCCGGGTGCTAGTGCTGGCCGAGGAGACTGA
GAAGCAGGAAAAGAGCGCCCTGCCGCTGTCGCCGACGAAGATCAAGACGA
AGACGCAGAATATAGCAGTAACCGCAACGGGCTCCCCGGTAGCCATGGAT
GTGGGAGGTCTGTCGGGCAGCAGCAGCTGTAGCAACAAGCTCCCGCCTAT
CCCCTTGCCCCCAACTGAGGCCCTGGTGGAGGAGCGACCAGTGAGCAAGG
CCTTGATGGCATGCGTAATGGCCCGGGAAGCCAAGTCCCGCTTCGCCGCC
GCCGCCTCCGCAGCAGCAGCAGCCGCGCCTGGTGGAGGAAATGCAGCAAC
AGCAAAGGACGCAGCATCAGCAGTAGTAGCAGTAGTAGCACCATCTGCAT
TACCGAGGGGGTCGCTTGTGGGGCGGGTGCAGGCGGCTTACTTCAAGCAG
GTGCCCGTGAAGGTGACGATGGAAGAGGCAAGGCAGTTGGATGAGCTCGC
CGTGGAAGAGGCGGAGATGGTGGAGAAGGAGAGGCTGAAAAAGGATAGGG
AGCAGCGGCAGCAGCCGCTCCAGCAGCGGCTGCAGCAGGAAAAGGAGTTG
GCAGCGCTGGCGGCGGCAATGAAGGAGAAGGAGAAGGAGAAGGCCACGGT
GTCACTGCGTGGGGAGGTTGGGGTAAAGGAGGAGAGGATGATGCAGCTGC
TGAACATAAATGACAAGGCGGTCGACGAGAAGGAACAGGGCGAAGGAGGG
AGGGAAGAACAAGTGCGGGCGGGGAGAGGGGAGGAGATTAGTCGAAAGCG
AACAGCCTGTGCTGCCTCTGGCCAGGCCTCCTTTGAACAGGAAAGCGGAC
GCACCAGCGACCTTACCGCGACAGCAACAAACCCCTCTTCCTTCCCCTCA
TCCCCCAAGACCACCCTCGCAGAGGACGGAGGCGAGATCGTGCGTGTCTC
GCCCGAGCTGTGCCGTGCCCTAATGACGCTCTGCCCCAACGCGGCTCGGG
ACTCGCTCACCGCCAAGGTCCAGTCGGCAGTCATGTCGCAGAAGGATAGC
TTGCACCTCCCTCCCCCACTCCCTCCCTCGTCTTCCCCGGGCTTGAGGCC
GGCGGAGCGCGTGCTGCTGGCCCAGGCGCAGGCCATGGTGGAAGAGGGCT
TGTTGGAGCCCGGCATGAAAGCCGAGAGGAAGAAGAAGGTGAAGCTGCTG
GCGACTGGCCAGGCCATAAAGGAGAATGGGCTGGAGGGGAAAAGAGGGAG
TGAAGGAGATGGAGGAGAAGAAAGTAAAGGAGAAGGAGGGACAGGGTTGT
TTTCTGTGTTGCTTACGCGGGAGGGGATCGGGGCGGTGCAGGCATGGGAG
GCCAAGGCAGGGGAGAAAGTGACGAGCTCCTCTCTTTCCTCGCGACTTAT
GGCCTTGTTCACGCGACAGATTACTGTCTTCCGTACGGACGACGCGCAGG
AGGCAAGAAAGGTGGAGGAGGCCGAGAGGGAGGGGGAGGGTAAGCGCCAG
AGGCGGGAGGCAGCCCTGCGGATTCAGCAGAAGCAGACGGGAATGAAGGA
GTGA

Synonyms

Publications