jgi.p|Nanoce1779_2|644232, mRNA_12217 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|644232
Unique NamemRNA_12217
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length399
Alignment locationscaffold_128:23501..24653 +

Link to JBrowse

Properties
Property NameValue
TranscriptId644318
TrackFilteredModels2
ProteinId644232
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:23501..24653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|644232gene_12217Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|644232mRNA_12217-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12217CDS_12217Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12217 ID=mRNA_12217|Name=jgi.p|Nanoce1779_2|644232|organism=Nannochloropsis oceanica|type=mRNA|length=399bp
ATGCAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGACAGTGGTTGTCTC
CCGCACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCACTCACCG
AGGCCCTGGCGCTAGCCGGGAAAGTCAAAAGGAGAAAGGGGAGAGAGGGA
ATGATCACTTGGATCGGAGGAGGGCATGACCTGTACCAGCAGACCATGGC
CCTCGACAGGCCCTCGTTCTTGTACTTAACGCAGACGCACTTCGAGGTGC
AGGGCGGAGACGCCTTCTTCCCTGAGGCCTGGGTTGAGTCATTCCCCCGA
CTCCTGTGGCGTTACAAGTCGTTGAGCTCGCCTTGCACGTTTGGGATCTA
CGCGGCGGCAGCGAGATCCCTTCCGGAGGGATTGAGAGAGGCAGAGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|644232

>mRNA_12217-protein ID=mRNA_12217-protein|Name=jgi.p|Nanoce1779_2|644232|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MQEAGHALPGRETVVVSRTLSSLPDALVASSLTEALALAGKVKRRKGREG
MITWIGGGHDLYQQTMALDRPSFLYLTQTHFEVQGGDAFFPEAWVESFPR
LLWRYKSLSSPCTFGIYAAAARSLPEGLREAE*
back to top

mRNA from alignment at scaffold_128:23501..24653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12217 ID=mRNA_12217|Name=jgi.p|Nanoce1779_2|644232|organism=Nannochloropsis oceanica|type=mRNA|length=1153bp|location=Sequence derived from alignment at scaffold_128:23501..24653+ (Nannochloropsis oceanica)
ATGCAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGACAGTGGTTGTCTC
CCGCACGCTCAGGTACCCTCCCCCTCCCTCCTTCACCCTTCCTCTCATTC
CCTCGTTATCCCTTCAGGGGGGAACGATAATTTATATCATGTCATATTCC
ATAAATCCATCTCTGCCTCTTTTTGGTCGCCGTTCATTGAGCTTTTGTAC
ATGTTCATCAGCGATTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TGCCTCCCTCCCTGCCTGCCTCCCTCCCTCCCTCCCCTCCTCCCTAGCTC
CCTCCCCGACGCCCTAGTCGCCTCTTCACTCACCGAGGCCCTGGCGCTAG
CCGGGAAAGTCAAAAGGAGAAAGGGGAGAGAGGGAATGATCACTTGGATC
GGAGGTGAGGGAATGGAGAGGGAGGAGGGAGGGAGGGAGGGACAGGAATT
GAAGGCAAGGGAGGCAGGTCGGGGGTTATATGAAGGACGAATTTGATATG
AAAAATCTTTGAATCGGGTCATGATAAAAGAGAAGGAAAAAAGAGGGAGG
CCAGGAGGGAGGAGAGGGCGCAATGAAAATCACTTTTTCTCTAACCTAAT
AATGCGCGGACACAGGAGGGCATGACCTGTACCAGCAGACCATGGCCCTC
GACAGGCCCTCGTTCTTGTACTTAACGCAGACGCACTTCGAGGTAAGGAA
GGGGGGAGAGAGTAAAGGTAGGAGGATTGGGAATTAGTGGGGAGACATTC
ATACCATGGTTGACAGAAGGAGGTCAGAAAGAAGTAGGGAATGGCCGCGA
CGAGAGGAGAAGAATGGAGAGAGAAATGAAGAAGGAAGGGAGCATGAGAG
GAAGAGAGGGACACGGAGAAATGAAGGAAGGGAGTAAGGAAGAGGATGAA
GGAAAGCGGAAGAAGGAGAGGACTGAAAACAATAACCAAGTCAACTCCCA
ACCAAGATACTCCACTACAATGATGCATCTTGAAACCTACGTCCATATAG
GTGCAGGGCGGAGACGCCTTCTTCCCTGAGGCCTGGGTTGAGTCATTCCC
CCGACTCCTGTGGCGTTACAAGTCGTTGAGCTCGCCTTGCACGTTTGGGA
TCTACGCGGCGGCAGCGAGATCCCTTCCGGAGGGATTGAGAGAGGCAGAG
TGA
back to top

Coding sequence (CDS) from alignment at scaffold_128:23501..24653+

>mRNA_12217 ID=mRNA_12217|Name=jgi.p|Nanoce1779_2|644232|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_128:23501..24653+ (Nannochloropsis oceanica)
ATGCAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGACAGTGGTTGTCTC
CCGCACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCACTCACCG
AGGCCCTGGCGCTAGCCGGGAAAGTCAAAAGGAGAAAGGGGAGAGAGGGA
ATGATCACTTGGATCGGAGGAGGGCATGACCTGTACCAGCAGACCATGGC
CCTCGACAGGCCCTCGTTCTTGTACTTAACGCAGACGCACTTCGAGGTGC
AGGGCGGAGACGCCTTCTTCCCTGAGGCCTGGGTTGAGTCATTCCCCCGA
CTCCTGTGGCGTTACAAGTCGTTGAGCTCGCCTTGCACGTTTGGGATCTA
CGCGGCGGCAGCGAGATCCCTTCCGGAGGGATTGAGAGAGGCAGAGTGAA
TGCAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGACAGTGGTTGTCTCC
CGCACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCACTCACCGA
GGCCCTGGCGCTAGCCGGGAAAGTCAAAAGGAGAAAGGGGAGAGAGGGAA
TGATCACTTGGATCGGAGGAGGGCATGACCTGTACCAGCAGACCATGGCC
CTCGACAGGCCCTCGTTCTTGTACTTAACGCAGACGCACTTCGAGGTGCA
GGGCGGAGACGCCTTCTTCCCTGAGGCCTGGGTTGAGTCATTCCCCCGAC
TCCTGTGGCGTTACAAGTCGTTGAGCTCGCCTTGCACGTTTGGGATCTAC
GCGGCGGCAGCGAGATCCCTTCCGGAGGGATTGAGAGAGGCAGAGTGAAT
GCAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGACAGTGGTTGTCTCCC
GCACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCACTCACCGAG
GCCCTGGCGCTAGCCGGGAAAGTCAAAAGGAGAAAGGGGAGAGAGGGAAT
GATCACTTGGATCGGAGGAGGGCATGACCTGTACCAGCAGACCATGGCCC
TCGACAGGCCCTCGTTCTTGTACTTAACGCAGACGCACTTCGAGGTGCAG
GGCGGAGACGCCTTCTTCCCTGAGGCCTGGGTTGAGTCATTCCCCCGACT
CCTGTGGCGTTACAAGTCGTTGAGCTCGCCTTGCACGTTTGGGATCTACG
CGGCGGCAGCGAGATCCCTTCCGGAGGGATTGAGAGAGGCAGAGTGAATG
CAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGACAGTGGTTGTCTCCCG
CACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCACTCACCGAGG
CCCTGGCGCTAGCCGGGAAAGTCAAAAGGAGAAAGGGGAGAGAGGGAATG
ATCACTTGGATCGGAGGAGGGCATGACCTGTACCAGCAGACCATGGCCCT
CGACAGGCCCTCGTTCTTGTACTTAACGCAGACGCACTTCGAGGTGCAGG
GCGGAGACGCCTTCTTCCCTGAGGCCTGGGTTGAGTCATTCCCCCGACTC
CTGTGGCGTTACAAGTCGTTGAGCTCGCCTTGCACGTTTGGGATCTACGC
GGCGGCAGCGAGATCCCTTCCGGAGGGATTGAGAGAGGCAGAGTGA
back to top
Synonyms
Publications