jgi.p|Nanoce1779_2|616984, mRNA_12214 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|616984
Unique NamemRNA_12214
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length614
Alignment locationscaffold_128:13397..14109 -

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Properties
Property NameValue
TranscriptId617070
TrackFilteredModels2
ProteinId616984
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:13397..14109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|616984gene_12214Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|616984mRNA_12214-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12214CDS_12214Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12214 ID=mRNA_12214|Name=jgi.p|Nanoce1779_2|616984|organism=Nannochloropsis oceanica|type=mRNA|length=614bp
ACAGGAAAGAGGACAGGGAGGCCGCATCGCGTACATGGCAGCGGGAGGCA
GGCCACGAGGCAGACCAACCTCCTCACCCCTCCCCCTCCTCTTCCTGCTC
CTGCTCCTCCCCCTTGCCCCCTCTTTCCTCCTCGTCCATCACACTGCTTT
GCCGTGTTCCCCCTCTGTTCTTGTCTCATCGTCCCTTTTATCGTCAGCCT
TGTCCTCCGCGCGAGAATGGGACCATATAGACGCCTATGGGGAGATTTTG
CGGCGCTGTCAAGACGAGGAGAGGGTCGTTCAGCGGCTCGGGGCCTTAAG
CAGGTAAGCAAGCAAGAAAGGGAAGGGAAGGGGAGAAAGTAGAATCGGGC
AAGTTCGGAGTGTGACATCGTTAACAAGTACCCTGCTTGTGCCGCTCCGA
CAAGGCTGGCCTACCTCTCCGAAAAGCAACGGGGTCTGCACCTCGCCCTG
CACAAGGACAGGCGGTACCGGCGTCTCGTGTCTAGTCTGTGGGAGGAACC
AGCGCTCAACGCTTTAATAGAAACGGACCCCTCCCTCCTCCTCCTCCTCC
CCCTCCTCCTCTACACCCTCGTCCACCCTCCCTCGCTCCTTCCTGTCGAT
GCTCTCCTTAACTG
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protein sequence of jgi.p|Nanoce1779_2|616984

>mRNA_12214-protein ID=mRNA_12214-protein|Name=jgi.p|Nanoce1779_2|616984|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MAAGGRPRGRPTSSPLPLLFLLLLLPLAPSFLLVHHTALPCSPSVLVSSS
LLSSALSSAREWDHIDAYGEILRRCQDEERVVQRLGALSR*
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mRNA from alignment at scaffold_128:13397..14109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12214 ID=mRNA_12214|Name=jgi.p|Nanoce1779_2|616984|organism=Nannochloropsis oceanica|type=mRNA|length=713bp|location=Sequence derived from alignment at scaffold_128:13397..14109- (Nannochloropsis oceanica)
ACAGGAAAGAGGACAGGGAGGCCGCATCGCGTACATGGCAGCGGGAGGCA
GGCCACGAGGCAGACCAACCTCCTCACCCCTCCCCCTCCTCTTCCTGCTC
CTGCTCCTCCCCCTTGCCCCCTCTTTCCTCCTCGTCCATCACACTGCTTT
GCCGTGTTCCCCCTCTGTTCTTGTCTCATCGTCCCTTTTATCGTCAGCCT
TGTCCTCCGCGCGAGAATGGGACCATATAGACGCCTATGGGGAGATTTTG
CGGCGCTGTCAAGACGAGGAGAGGGTCGTTCAGCGGCTCGGGGCCTTAAG
CAGGTAAGCAAGCAAGAAAGGGAAGGGAAGGGGAGAAAGTAGAATCGGGC
AAGTTCGGAGTGTGACATCGTTAACAAGTACCCTGCTTGTGCCGCTCCGA
CAAGGCTGGCCTACCTCTCCGAAAAGCAACGGGGTCTGCACCTCGCCCTG
CACAAGGACAGGCGGTACCGGCGTCTCGTGTCTAGTCTGTGGGAGGAACC
AGCGCTCAACGCTTTAATAGAAACGGTGAGGAGGGAGGGAGGGAGGGAGG
GAGGGGTAGCGTCCATTCCATGCTTCAACGAATGTTATGTTTGTTTACAT
CTGTCCCCGGACACGCAACCGTAGGACCCCTCCCTCCTCCTCCTCCTCCC
CCTCCTCCTCTACACCCTCGTCCACCCTCCCTCGCTCCTTCCTGTCGATG
CTCTCCTTAACTG
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Coding sequence (CDS) from alignment at scaffold_128:13397..14109-

>mRNA_12214 ID=mRNA_12214|Name=jgi.p|Nanoce1779_2|616984|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_128:13397..14109- (Nannochloropsis oceanica)
ATGGCAGCGGGAGGCAGGCCACGAGGCAGACCAACCTCCTCACCCCTCCC
CCTCCTCTTCCTGCTCCTGCTCCTCCCCCTTGCCCCCTCTTTCCTCCTCG
TCCATCACACTGCTTTGCCGTGTTCCCCCTCTGTTCTTGTCTCATCGTCC
CTTTTATCGTCAGCCTTGTCCTCCGCGCGAGAATGGGACCATATAGACGC
CTATGGGGAGATTTTGCGGCGCTGTCAAGACGAGGAGAGGGTCGTTCAGC
GGCTCGGGGCCTTAAGCAGGTAA
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Synonyms
Publications