NO28G01650, NO28G01650 (gene) Nannochloropsis oceanica

Overview
NameNO28G01650
Unique NameNO28G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2568
Alignment locationchr28:515699..518266 -

Link to JBrowse

Properties
Property NameValue
DescriptionAn1-type zinc finger protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:515699..518266 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR035896AN1-like_Znf
IPR000058Znf_AN1
IPR029071Ubiquitin-rel_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01650.4NO28G01650.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01650.3NO28G01650.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01650.2NO28G01650.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01650.1NO28G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01650.4NO28G01650.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01650.3NO28G01650.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01650.2NO28G01650.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01650.1NO28G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01650 ID=NO28G01650|Name=NO28G01650|organism=Nannochloropsis oceanica|type=gene|length=2568bp
ACCACAGCCAGAGTTACGCGGTAGCCTACACATCACATTTTACTTTCCCG
CCTCGACGGAAATGTCAGCGCACTACGGCGATAAGTGTGCCTTGTGCGGG
AAGAACGACTTCCTGCCGCTCAAgtgcgttgtggggagttacggagggag
ggcagggagggagggcagggagggagggcagtgaagggaaggaggaagag
gtacaaagggtctacagatgcactgcatggacgcgtcgcacatgctctta
tacattcattttccgaacatttttgttttcgttatgtgcatagGTGTGAT
TTGTGCGCACTTCTTCTTTGCACGGAACATATGGCCCCGTTTGCACACCC
CTGCGCGGGGCGGGGTGAGCAGAGAGGGGAGAATGGGAGAGGGAGGGGAG
GGGGGCATAGAGCTTGAGTCAGAGAGGCGGAATAGCAAGTGAAATGAAAG
CTTCTGGATATTGTCTATGCATGCGTAGGGCCTTTGCGCTCGCTTCTTCC
CACCCATTTCTTCCCTCCCTCTTACCCTCCCTCCCTCCCTCCCTCCCTTT
TTCCGCAGCGGACAACGTCACCATCGCTCGTCCCGAGGCAGTGGGCTTAG
GCAAAGCTCTGGCTGACGAAATGGCTGATGTTGCTCGCCGCTTTGAGGGG
AAGGGCGAGgtaaggaacgagggagtgaaggaggaagaggaagggaggga
gggaggggggtaggacctctcccaggcatcctccctacgcaaattgaact
tcatccctccctctctccctccctccctcccttcttccctccctcccccc
gtctccagTGGTCGCAGAAGGTGCACATCCGAGTCAAGGGTAGCGGTGCC
GCACTAGCTTCTTCCTTCCAAAAAGAAAACAAATTTCTTCGAGCTTACCG
GGCAAAGGCGAAGGGAGgtagggagggagggagggggggagagaaggaga
gaggggatcagaaagggaggaaaggaggagttagagaggaagggagggag
ggaatgagagagggatggcataaaggatgctttcatccacctcacccatc
caactttcatttctttcctcccttccttcctcggctgagaatgctcttct
gtgtctgtcaaagatgtccactatttctctctcccccccttcctccctcc
ctttctctctccctcccttcctcctcagGGAGAAGCAACAGCAAAGGCCA
GCGCATGTCGGACACGGTGCGCCGAATGCTGATGAAGGGAAAAGCGGGAG
GGAGGAGCGGCCTGCACCAGGACGATCGTTTTTATCTCGAGgtaagtagg
cagggagggagggagggagaggggaaggaagggaaagaggagggggtagc
atctgacaagtctttacgttccctgtgttcaaagATACGCTTTGGGGGCC
TCCTCATTGGAGAGGATGGCACCTCCTCCTCCCCCTCCTCCTCCCCCTCC
TCGCCATCGTCGTCTTCTTCTTGTCCACCACTTGAGgtacgctcaacttt
taaaacgctatgcacatacgcaccactcccctccctcctttcctccttcc
ttccccctccttcccctcctcccctccttgtgacaaggcacctccctccc
tccctccctccctccctccctcccccccccagGTGGTAGACTACATCTTT
GTCTCTCGGTTGTGGACCCTCGGAAGAACTCTCGATGAGGCGGTGGGGAA
GCACCAGGCCGCGCTGCGAAAAGTCTATCCTCCCTCTCCTTCTTCTCCTT
CCCACAAGgtgagtggcgagccctgccttccctccatccctccctccctt
ccttccttcttccctcccctgcgtgaacctcgattctgccgataaataca
acctccccccctccttccctacgtccctagCCCTCCCCTACTTCCTACAC
CTTCCTGAATGAGCGCACTGGCCTCTCCCTCCATCCTTTCCTCGGCCGCT
CCCTCCTCGACCTCGCTTCGGCCAAGCTCGTCGATGACTATGAGTCTCTC
ATCCTTCTTCCTTTCAGTGAAGAGGGGGGGAAAGAAGAGGGAGAAAATGA
GGGAGCGAAAGAGGGAGAGGCTGCTGCGAGAGAAGGAGGGGAGGAAGGAG
AGAAGGAAGGGACAACAATGACAAAAACAGCAGCAGAAGCGGTAGCAGTA
GCTACCCAAAAATCAAAGACGATCACAGCGGCAGTGGCAGCAGCAGTAGA
GCCAATGAGCACAGAGGTAGAAGACGGACAGAGTGAAGGGAAAGGAGAAG
CTTCCCTTCCTCCATCTCTCACCTTGTACATCACCCAAGGTTCCTCTGTC
TCTCACCCTCTCGTCTTTCCCTTGTCCGAGTGGCCCTCCCTATGTACCTC
TGACCTACAAGAACGTGTGTGGACTGCTACAGGAATTAGACCTGAGCGGC
AAAAATTGTTGTTCAAGGGCGTGATGGAGGGGGGAGGAAAGAAACTCTGT
GAATGGAAAGGCCTCCGAGACGGGAGCAAGATCACTCTCATGACGAAGAA
GTAAAAAGGACCAGACGACGAACGAAAGGGAATGAGATGCGCGCCGCACA
TGTGCATTCTTTTGGAGG
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protein sequence of NO28G01650.4

>NO28G01650.4-protein ID=NO28G01650.4-protein|Name=NO28G01650.4|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MADVARRFEGKGEWSQKVHIRVKGSGAALASSFQKENKFLRAYRAKAKGG
RSNSKGQRMSDTVRRMLMKGKAGGRSGLHQDDRFYLEVSRQGGREGEGKE
GKEEGVASDKSLRSLCSKIRFGGLLIGEDGTSSSPSSSPSSPSSSSSCPP
LEVVDYIFVSRLWTLGRTLDEAVGKHQAALRKVYPPSPSSPSHKPSPTSY
TFLNERTGLSLHPFLGRSLLDLASAKLVDDYESLILLPFSEEGGKEEGEN
EGAKEGEAAAREGGEEGEKEGTTMTKTAAEAVAVATQKSKTITAAVAAAV
EPMSTEVEDGQSEGKGEASLPPSLTLYITQGSSVSHPLVFPLSEWPSLCT
SDLQERVWTATGIRPERQKLLFKGVMEGGGKKLCEWKGLRDGSKITLMTK
K*
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protein sequence of NO28G01650.3

>NO28G01650.3-protein ID=NO28G01650.3-protein|Name=NO28G01650.3|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MADVARRFEGKGEWSQKVHIRVKGSGAALASSFQKENKFLRAYRAKAKGG
RSNSKGQRMSDTVRRMLMKGKAGGRSGLHQDDRFYLEIRFGGLLIGEDGT
SSSPSSSPSSPSSSSSCPPLEVVDYIFVSRLWTLGRTLDEAVGKHQAALR
KVYPPSPSSPSHKPSPTSYTFLNERTGLSLHPFLGRSLLDLASAKLVDDY
ESLILLPFSEEGGKEEGENEGAKEGEAAAREGGEEGEKEGTTMTKTAAEA
VAVATQKSKTITAAVAAAVEPMSTEVEDGQSEGKGEASLPPSLTLYITQG
SSVSHPLVFPLSEWPSLCTSDLQERVWTATGIRPERQKLLFKGVMEGGGK
KLCEWKGLRDGSKITLMTKK*
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protein sequence of NO28G01650.2

>NO28G01650.2-protein ID=NO28G01650.2-protein|Name=NO28G01650.2|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MKASGYCLCMRRAFALASSHPFLPSLLPSLPPSLPFSAADNVTIARPEAV
GLGKALADEMADVARRFEGKGEWSQKVHIRVKGSGAALASSFQKENKFLR
AYRAKAKGGRSNSKGQRMSDTVRRMLMKGKAGGRSGLHQDDRFYLEIRFG
GLLIGEDGTSSSPSSSPSSPSSSSSCPPLEVVDYIFVSRLWTLGRTLDEA
VGKHQAALRKVYPPSPSSPSHKPSPTSYTFLNERTGLSLHPFLGRSLLDL
ASAKLVDDYESLILLPFSEEGGKEEGENEGAKEGEAAAREGGEEGEKEGT
TMTKTAAEAVAVATQKSKTITAAVAAAVEPMSTEVEDGQSEGKGEASLPP
SLTLYITQGSSVSHPLVFPLSEWPSLCTSDLQERVWTATGIRPERQKLLF
KGVMEGGGKKLCEWKGLRDGSKITLMTKK*
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protein sequence of NO28G01650.1

>NO28G01650.1-protein ID=NO28G01650.1-protein|Name=NO28G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MSAHYGDKCALCGKNDFLPLKCDLCALLLCTEHMAPFAHPCAGRADNVTI
ARPEAVGLGKALADEMADVARRFEGKGEWSQKVHIRVKGSGAALASSFQK
ENKFLRAYRAKAKGGRSNSKGQRMSDTVRRMLMKGKAGGRSGLHQDDRFY
LEIRFGGLLIGEDGTSSSPSSSPSSPSSSSSCPPLEVVDYIFVSRLWTLG
RTLDEAVGKHQAALRKVYPPSPSSPSHKPSPTSYTFLNERTGLSLHPFLG
RSLLDLASAKLVDDYESLILLPFSEEGGKEEGENEGAKEGEAAAREGGEE
GEKEGTTMTKTAAEAVAVATQKSKTITAAVAAAVEPMSTEVEDGQSEGKG
EASLPPSLTLYITQGSSVSHPLVFPLSEWPSLCTSDLQERVWTATGIRPE
RQKLLFKGVMEGGGKKLCEWKGLRDGSKITLMTKK*
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Synonyms
Publications