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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:515699..518266 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01650.2 vs.
Match: EWM20355.1 (an1-type zinc finger protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 80.9 bits (198), Expect = 1.100e-11 Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 0
Query: 15 ALASSHPFLP------SLLPSLPPSLPFS-----AADNVTIARPEAVGLGKALADEMADVARRFEGKGEWSQKVHIRVKGSGAALASSFQKENKFLRAYRAKAKGG 110
AL + FLP SLL PF+ DN + RP+A GLG+ALA+EM V RRF+G EW+ + H RV+GS A LA+SF+ ENK+L+AYR +AK G
Sbjct: 10 ALCGRNDFLPHRCTLCSLLHCTDHMAPFAHECAGREDNTSKDRPQAFGLGQALAEEMDRVRRRFDGASEWATREHFRVQGSQADLATSFRAENKYLKAYREQAKAG 115
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01650.2 ID=NO28G01650.2|Name=NO28G01650.2|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp
ACCACAGCCAGAGTTACGCGGTAGCCTACACATCACATTTTACTTTCCCG
CCTCGACGGAAATGTCAGCGCACTACGGCGATAAGTGTGCCTTGTGCGGG
AAGAACGACTTCCTGCCGCTCAAGTGTGATTTGTGCGCACTTCTTCTTTG
CACGGAACATATGGCCCCGTTTGCACACCCCTGCGCGGGGCGGGGTGAGC
AGAGAGGGGAGAATGGGAGAGGGAGGGGAGGGGGGCATAGAGCTTGAGTC
AGAGAGGCGGAATAGCAAGTGAAATGAAAGCTTCTGGATATTGTCTATGC
ATGCGTAGGGCCTTTGCGCTCGCTTCTTCCCACCCATTTCTTCCCTCCCT
CTTACCCTCCCTCCCTCCCTCCCTCCCTTTTTCCGCAGCGGACAACGTCA
CCATCGCTCGTCCCGAGGCAGTGGGCTTAGGCAAAGCTCTGGCTGACGAA
ATGGCTGATGTTGCTCGCCGCTTTGAGGGGAAGGGCGAGTGGTCGCAGAA
GGTGCACATCCGAGTCAAGGGTAGCGGTGCCGCACTAGCTTCTTCCTTCC
AAAAAGAAAACAAATTTCTTCGAGCTTACCGGGCAAAGGCGAAGGGAGGG
AGAAGCAACAGCAAAGGCCAGCGCATGTCGGACACGGTGCGCCGAATGCT
GATGAAGGGAAAAGCGGGAGGGAGGAGCGGCCTGCACCAGGACGATCGTT
TTTATCTCGAGATACGCTTTGGGGGCCTCCTCATTGGAGAGGATGGCACC
TCCTCCTCCCCCTCCTCCTCCCCCTCCTCGCCATCGTCGTCTTCTTCTTG
TCCACCACTTGAGGTGGTAGACTACATCTTTGTCTCTCGGTTGTGGACCC
TCGGAAGAACTCTCGATGAGGCGGTGGGGAAGCACCAGGCCGCGCTGCGA
AAAGTCTATCCTCCCTCTCCTTCTTCTCCTTCCCACAAGCCCTCCCCTAC
TTCCTACACCTTCCTGAATGAGCGCACTGGCCTCTCCCTCCATCCTTTCC
TCGGCCGCTCCCTCCTCGACCTCGCTTCGGCCAAGCTCGTCGATGACTAT
GAGTCTCTCATCCTTCTTCCTTTCAGTGAAGAGGGGGGGAAAGAAGAGGG
AGAAAATGAGGGAGCGAAAGAGGGAGAGGCTGCTGCGAGAGAAGGAGGGG
AGGAAGGAGAGAAGGAAGGGACAACAATGACAAAAACAGCAGCAGAAGCG
GTAGCAGTAGCTACCCAAAAATCAAAGACGATCACAGCGGCAGTGGCAGC
AGCAGTAGAGCCAATGAGCACAGAGGTAGAAGACGGACAGAGTGAAGGGA
AAGGAGAAGCTTCCCTTCCTCCATCTCTCACCTTGTACATCACCCAAGGT
TCCTCTGTCTCTCACCCTCTCGTCTTTCCCTTGTCCGAGTGGCCCTCCCT
ATGTACCTCTGACCTACAAGAACGTGTGTGGACTGCTACAGGAATTAGAC
CTGAGCGGCAAAAATTGTTGTTCAAGGGCGTGATGGAGGGGGGAGGAAAG
AAACTCTGTGAATGGAAAGGCCTCCGAGACGGGAGCAAGATCACTCTCAT
GACGAAGAAGTAAAAAGGACCAGACGACGAACGAAAGGGAATGAGATGCG
CGCCGCACATGTGCATTCTTTTGGAGG back to topprotein sequence of NO28G01650.2 >NO28G01650.2-protein ID=NO28G01650.2-protein|Name=NO28G01650.2|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MKASGYCLCMRRAFALASSHPFLPSLLPSLPPSLPFSAADNVTIARPEAV
GLGKALADEMADVARRFEGKGEWSQKVHIRVKGSGAALASSFQKENKFLR
AYRAKAKGGRSNSKGQRMSDTVRRMLMKGKAGGRSGLHQDDRFYLEIRFG
GLLIGEDGTSSSPSSSPSSPSSSSSCPPLEVVDYIFVSRLWTLGRTLDEA
VGKHQAALRKVYPPSPSSPSHKPSPTSYTFLNERTGLSLHPFLGRSLLDL
ASAKLVDDYESLILLPFSEEGGKEEGENEGAKEGEAAAREGGEEGEKEGT
TMTKTAAEAVAVATQKSKTITAAVAAAVEPMSTEVEDGQSEGKGEASLPP
SLTLYITQGSSVSHPLVFPLSEWPSLCTSDLQERVWTATGIRPERQKLLF
KGVMEGGGKKLCEWKGLRDGSKITLMTKK* back to topmRNA from alignment at chr28:515699..518266- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01650.2 ID=NO28G01650.2|Name=NO28G01650.2|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp|location=Sequence derived from alignment at chr28:515699..518266- (Nannochloropsis oceanica)
ACCACAGCCAGAGTTACGCGGTAGCCTACACATCACATTTTACTTTCCCG
CCTCGACGGAAATGTCAGCGCACTACGGCGATAAGTGTGCCTTGTGCGGG
AAGAACGACTTCCTGCCGCTCAAGTGCGTTGTGGGGAGTTACGGAGGGAG
GGCAGGGAGGGAGGGCAGGGAGGGAGGGCAGTGAAGGGAAGGAGGAAGAG
GTACAAAGGGTCTACAGATGCACTGCATGGACGCGTCGCACATGCTCTTA
TACATTCATTTTCCGAACATTTTTGTTTTCGTTATGTGCATAGGTGTGAT
TTGTGCGCACTTCTTCTTTGCACGGAACATATGGCCCCGTTTGCACACCC
CTGCGCGGGGCGGGGTGAGCAGAGAGGGGAGAATGGGAGAGGGAGGGGAG
GGGGGCATAGAGCTTGAGTCAGAGAGGCGGAATAGCAAGTGAAATGAAAG
CTTCTGGATATTGTCTATGCATGCGTAGGGCCTTTGCGCTCGCTTCTTCC
CACCCATTTCTTCCCTCCCTCTTACCCTCCCTCCCTCCCTCCCTCCCTTT
TTCCGCAGCGGACAACGTCACCATCGCTCGTCCCGAGGCAGTGGGCTTAG
GCAAAGCTCTGGCTGACGAAATGGCTGATGTTGCTCGCCGCTTTGAGGGG
AAGGGCGAGGTAAGGAACGAGGGAGTGAAGGAGGAAGAGGAAGGGAGGGA
GGGAGGGGGGTAGGACCTCTCCCAGGCATCCTCCCTACGCAAATTGAACT
TCATCCCTCCCTCTCTCCCTCCCTCCCTCCCTTCTTCCCTCCCTCCCCCC
GTCTCCAGTGGTCGCAGAAGGTGCACATCCGAGTCAAGGGTAGCGGTGCC
GCACTAGCTTCTTCCTTCCAAAAAGAAAACAAATTTCTTCGAGCTTACCG
GGCAAAGGCGAAGGGAGGTAGGGAGGGAGGGAGGGGGGGAGAGAAGGAGA
GAGGGGATCAGAAAGGGAGGAAAGGAGGAGTTAGAGAGGAAGGGAGGGAG
GGAATGAGAGAGGGATGGCATAAAGGATGCTTTCATCCACCTCACCCATC
CAACTTTCATTTCTTTCCTCCCTTCCTTCCTCGGCTGAGAATGCTCTTCT
GTGTCTGTCAAAGATGTCCACTATTTCTCTCTCCCCCCCTTCCTCCCTCC
CTTTCTCTCTCCCTCCCTTCCTCCTCAGGGAGAAGCAACAGCAAAGGCCA
GCGCATGTCGGACACGGTGCGCCGAATGCTGATGAAGGGAAAAGCGGGAG
GGAGGAGCGGCCTGCACCAGGACGATCGTTTTTATCTCGAGGTAAGTAGG
CAGGGAGGGAGGGAGGGAGAGGGGAAGGAAGGGAAAGAGGAGGGGGTAGC
ATCTGACAAGTCTTTACGTTCCCTGTGTTCAAAGATACGCTTTGGGGGCC
TCCTCATTGGAGAGGATGGCACCTCCTCCTCCCCCTCCTCCTCCCCCTCC
TCGCCATCGTCGTCTTCTTCTTGTCCACCACTTGAGGTACGCTCAACTTT
TAAAACGCTATGCACATACGCACCACTCCCCTCCCTCCTTTCCTCCTTCC
TTCCCCCTCCTTCCCCTCCTCCCCTCCTTGTGACAAGGCACCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCCCCCCCAGGTGGTAGACTACATCTTT
GTCTCTCGGTTGTGGACCCTCGGAAGAACTCTCGATGAGGCGGTGGGGAA
GCACCAGGCCGCGCTGCGAAAAGTCTATCCTCCCTCTCCTTCTTCTCCTT
CCCACAAGGTGAGTGGCGAGCCCTGCCTTCCCTCCATCCCTCCCTCCCTT
CCTTCCTTCTTCCCTCCCCTGCGTGAACCTCGATTCTGCCGATAAATACA
ACCTCCCCCCCTCCTTCCCTACGTCCCTAGCCCTCCCCTACTTCCTACAC
CTTCCTGAATGAGCGCACTGGCCTCTCCCTCCATCCTTTCCTCGGCCGCT
CCCTCCTCGACCTCGCTTCGGCCAAGCTCGTCGATGACTATGAGTCTCTC
ATCCTTCTTCCTTTCAGTGAAGAGGGGGGGAAAGAAGAGGGAGAAAATGA
GGGAGCGAAAGAGGGAGAGGCTGCTGCGAGAGAAGGAGGGGAGGAAGGAG
AGAAGGAAGGGACAACAATGACAAAAACAGCAGCAGAAGCGGTAGCAGTA
GCTACCCAAAAATCAAAGACGATCACAGCGGCAGTGGCAGCAGCAGTAGA
GCCAATGAGCACAGAGGTAGAAGACGGACAGAGTGAAGGGAAAGGAGAAG
CTTCCCTTCCTCCATCTCTCACCTTGTACATCACCCAAGGTTCCTCTGTC
TCTCACCCTCTCGTCTTTCCCTTGTCCGAGTGGCCCTCCCTATGTACCTC
TGACCTACAAGAACGTGTGTGGACTGCTACAGGAATTAGACCTGAGCGGC
AAAAATTGTTGTTCAAGGGCGTGATGGAGGGGGGAGGAAAGAAACTCTGT
GAATGGAAAGGCCTCCGAGACGGGAGCAAGATCACTCTCATGACGAAGAA
GTAAAAAGGACCAGACGACGAACGAAAGGGAATGAGATGCGCGCCGCACA
TGTGCATTCTTTTGGAGG back to topCoding sequence (CDS) from alignment at chr28:515699..518266- >NO28G01650.2 ID=NO28G01650.2|Name=NO28G01650.2|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr28:515699..518266- (Nannochloropsis oceanica)
ATGAAAGCTTCTGGATATTGTCTATGCATGCGTAGGGCCTTTGCGCTCGC
TTCTTCCCACCCATTTCTTCCCTCCCTCTTACCCTCCCTCCCTCCCTCCC
TCCCTTTTTCCGCAGCGGACAACGTCACCATCGCTCGTCCCGAGGCAGTG
GGCTTAGGCAAAGCTCTGGCTGACGAAATGGCTGATGTTGCTCGCCGCTT
TGAGGGGAAGGGCGAGTGGTCGCAGAAGGTGCACATCCGAGTCAAGGGTA
GCGGTGCCGCACTAGCTTCTTCCTTCCAAAAAGAAAACAAATTTCTTCGA
GCTTACCGGGCAAAGGCGAAGGGAGGGAGAAGCAACAGCAAAGGCCAGCG
CATGTCGGACACGGTGCGCCGAATGCTGATGAAGGGAAAAGCGGGAGGGA
GGAGCGGCCTGCACCAGGACGATCGTTTTTATCTCGAGATACGCTTTGGG
GGCCTCCTCATTGGAGAGGATGGCACCTCCTCCTCCCCCTCCTCCTCCCC
CTCCTCGCCATCGTCGTCTTCTTCTTGTCCACCACTTGAGGTGGTAGACT
ACATCTTTGTCTCTCGGTTGTGGACCCTCGGAAGAACTCTCGATGAGGCG
GTGGGGAAGCACCAGGCCGCGCTGCGAAAAGTCTATCCTCCCTCTCCTTC
TTCTCCTTCCCACAAGCCCTCCCCTACTTCCTACACCTTCCTGAATGAGC
GCACTGGCCTCTCCCTCCATCCTTTCCTCGGCCGCTCCCTCCTCGACCTC
GCTTCGGCCAAGCTCGTCGATGACTATGAGTCTCTCATCCTTCTTCCTTT
CAGTGAAGAGGGGGGGAAAGAAGAGGGAGAAAATGAGGGAGCGAAAGAGG
GAGAGGCTGCTGCGAGAGAAGGAGGGGAGGAAGGAGAGAAGGAAGGGACA
ACAATGACAAAAACAGCAGCAGAAGCGGTAGCAGTAGCTACCCAAAAATC
AAAGACGATCACAGCGGCAGTGGCAGCAGCAGTAGAGCCAATGAGCACAG
AGGTAGAAGACGGACAGAGTGAAGGGAAAGGAGAAGCTTCCCTTCCTCCA
TCTCTCACCTTGTACATCACCCAAGGTTCCTCTGTCTCTCACCCTCTCGT
CTTTCCCTTGTCCGAGTGGCCCTCCCTATGTACCTCTGACCTACAAGAAC
GTGTGTGGACTGCTACAGGAATTAGACCTGAGCGGCAAAAATTGTTGTTC
AAGGGCGTGATGGAGGGGGGAGGAAAGAAACTCTGTGAATGGAAAGGCCT
CCGAGACGGGAGCAAGATCACTCTCATGACGAAGAAGTAA back to top
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