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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:515699..518266 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01650.1 vs.
Match: EWM20355.1 (an1-type zinc finger protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 162.9 bits (411), Expect = 2.200e-36 Identity = 75/115 (65.22%), Postives = 93/115 (80.87%), Query Frame = 0
Query: 1 MSAHYGDKCALCGKNDFLPLKCDLCALLLCTEHMAPFAHPCAGRADNVTIARPEAVGLGKALADEMADVARRFEGKGEWSQKVHIRVKGSGAALASSFQKENKFLRAYRAKAKGG 116
M+AHYGDKCALCG+NDFLP +C LC+LL CT+HMAPFAH CAGR DN + RP+A GLG+ALA+EM V RRF+G EW+ + H RV+GS A LA+SF+ ENK+L+AYR +AK G
Sbjct: 1 MAAHYGDKCALCGRNDFLPHRCTLCSLLHCTDHMAPFAHECAGREDNTSKDRPQAFGLGQALAEEMDRVRRRFDGASEWATREHFRVQGSQADLATSFRAENKYLKAYREQAKAG 115
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01650.1 ID=NO28G01650.1|Name=NO28G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1433bp
ACCACAGCCAGAGTTACGCGGTAGCCTACACATCACATTTTACTTTCCCG
CCTCGACGGAAATGTCAGCGCACTACGGCGATAAGTGTGCCTTGTGCGGG
AAGAACGACTTCCTGCCGCTCAAGTGTGATTTGTGCGCACTTCTTCTTTG
CACGGAACATATGGCCCCGTTTGCACACCCCTGCGCGGGGCGGGCGGACA
ACGTCACCATCGCTCGTCCCGAGGCAGTGGGCTTAGGCAAAGCTCTGGCT
GACGAAATGGCTGATGTTGCTCGCCGCTTTGAGGGGAAGGGCGAGTGGTC
GCAGAAGGTGCACATCCGAGTCAAGGGTAGCGGTGCCGCACTAGCTTCTT
CCTTCCAAAAAGAAAACAAATTTCTTCGAGCTTACCGGGCAAAGGCGAAG
GGAGGGAGAAGCAACAGCAAAGGCCAGCGCATGTCGGACACGGTGCGCCG
AATGCTGATGAAGGGAAAAGCGGGAGGGAGGAGCGGCCTGCACCAGGACG
ATCGTTTTTATCTCGAGATACGCTTTGGGGGCCTCCTCATTGGAGAGGAT
GGCACCTCCTCCTCCCCCTCCTCCTCCCCCTCCTCGCCATCGTCGTCTTC
TTCTTGTCCACCACTTGAGGTGGTAGACTACATCTTTGTCTCTCGGTTGT
GGACCCTCGGAAGAACTCTCGATGAGGCGGTGGGGAAGCACCAGGCCGCG
CTGCGAAAAGTCTATCCTCCCTCTCCTTCTTCTCCTTCCCACAAGCCCTC
CCCTACTTCCTACACCTTCCTGAATGAGCGCACTGGCCTCTCCCTCCATC
CTTTCCTCGGCCGCTCCCTCCTCGACCTCGCTTCGGCCAAGCTCGTCGAT
GACTATGAGTCTCTCATCCTTCTTCCTTTCAGTGAAGAGGGGGGGAAAGA
AGAGGGAGAAAATGAGGGAGCGAAAGAGGGAGAGGCTGCTGCGAGAGAAG
GAGGGGAGGAAGGAGAGAAGGAAGGGACAACAATGACAAAAACAGCAGCA
GAAGCGGTAGCAGTAGCTACCCAAAAATCAAAGACGATCACAGCGGCAGT
GGCAGCAGCAGTAGAGCCAATGAGCACAGAGGTAGAAGACGGACAGAGTG
AAGGGAAAGGAGAAGCTTCCCTTCCTCCATCTCTCACCTTGTACATCACC
CAAGGTTCCTCTGTCTCTCACCCTCTCGTCTTTCCCTTGTCCGAGTGGCC
CTCCCTATGTACCTCTGACCTACAAGAACGTGTGTGGACTGCTACAGGAA
TTAGACCTGAGCGGCAAAAATTGTTGTTCAAGGGCGTGATGGAGGGGGGA
GGAAAGAAACTCTGTGAATGGAAAGGCCTCCGAGACGGGAGCAAGATCAC
TCTCATGACGAAGAAGTAAAAAGGACCAGACGACGAACGAAAGGGAATGA
GATGCGCGCCGCACATGTGCATTCTTTTGGAGG back to topprotein sequence of NO28G01650.1 >NO28G01650.1-protein ID=NO28G01650.1-protein|Name=NO28G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MSAHYGDKCALCGKNDFLPLKCDLCALLLCTEHMAPFAHPCAGRADNVTI
ARPEAVGLGKALADEMADVARRFEGKGEWSQKVHIRVKGSGAALASSFQK
ENKFLRAYRAKAKGGRSNSKGQRMSDTVRRMLMKGKAGGRSGLHQDDRFY
LEIRFGGLLIGEDGTSSSPSSSPSSPSSSSSCPPLEVVDYIFVSRLWTLG
RTLDEAVGKHQAALRKVYPPSPSSPSHKPSPTSYTFLNERTGLSLHPFLG
RSLLDLASAKLVDDYESLILLPFSEEGGKEEGENEGAKEGEAAAREGGEE
GEKEGTTMTKTAAEAVAVATQKSKTITAAVAAAVEPMSTEVEDGQSEGKG
EASLPPSLTLYITQGSSVSHPLVFPLSEWPSLCTSDLQERVWTATGIRPE
RQKLLFKGVMEGGGKKLCEWKGLRDGSKITLMTKK* back to topmRNA from alignment at chr28:515699..518266- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01650.1 ID=NO28G01650.1|Name=NO28G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp|location=Sequence derived from alignment at chr28:515699..518266- (Nannochloropsis oceanica)
ACCACAGCCAGAGTTACGCGGTAGCCTACACATCACATTTTACTTTCCCG
CCTCGACGGAAATGTCAGCGCACTACGGCGATAAGTGTGCCTTGTGCGGG
AAGAACGACTTCCTGCCGCTCAAGTGCGTTGTGGGGAGTTACGGAGGGAG
GGCAGGGAGGGAGGGCAGGGAGGGAGGGCAGTGAAGGGAAGGAGGAAGAG
GTACAAAGGGTCTACAGATGCACTGCATGGACGCGTCGCACATGCTCTTA
TACATTCATTTTCCGAACATTTTTGTTTTCGTTATGTGCATAGGTGTGAT
TTGTGCGCACTTCTTCTTTGCACGGAACATATGGCCCCGTTTGCACACCC
CTGCGCGGGGCGGGGTGAGCAGAGAGGGGAGAATGGGAGAGGGAGGGGAG
GGGGGCATAGAGCTTGAGTCAGAGAGGCGGAATAGCAAGTGAAATGAAAG
CTTCTGGATATTGTCTATGCATGCGTAGGGCCTTTGCGCTCGCTTCTTCC
CACCCATTTCTTCCCTCCCTCTTACCCTCCCTCCCTCCCTCCCTCCCTTT
TTCCGCAGCGGACAACGTCACCATCGCTCGTCCCGAGGCAGTGGGCTTAG
GCAAAGCTCTGGCTGACGAAATGGCTGATGTTGCTCGCCGCTTTGAGGGG
AAGGGCGAGGTAAGGAACGAGGGAGTGAAGGAGGAAGAGGAAGGGAGGGA
GGGAGGGGGGTAGGACCTCTCCCAGGCATCCTCCCTACGCAAATTGAACT
TCATCCCTCCCTCTCTCCCTCCCTCCCTCCCTTCTTCCCTCCCTCCCCCC
GTCTCCAGTGGTCGCAGAAGGTGCACATCCGAGTCAAGGGTAGCGGTGCC
GCACTAGCTTCTTCCTTCCAAAAAGAAAACAAATTTCTTCGAGCTTACCG
GGCAAAGGCGAAGGGAGGTAGGGAGGGAGGGAGGGGGGGAGAGAAGGAGA
GAGGGGATCAGAAAGGGAGGAAAGGAGGAGTTAGAGAGGAAGGGAGGGAG
GGAATGAGAGAGGGATGGCATAAAGGATGCTTTCATCCACCTCACCCATC
CAACTTTCATTTCTTTCCTCCCTTCCTTCCTCGGCTGAGAATGCTCTTCT
GTGTCTGTCAAAGATGTCCACTATTTCTCTCTCCCCCCCTTCCTCCCTCC
CTTTCTCTCTCCCTCCCTTCCTCCTCAGGGAGAAGCAACAGCAAAGGCCA
GCGCATGTCGGACACGGTGCGCCGAATGCTGATGAAGGGAAAAGCGGGAG
GGAGGAGCGGCCTGCACCAGGACGATCGTTTTTATCTCGAGGTAAGTAGG
CAGGGAGGGAGGGAGGGAGAGGGGAAGGAAGGGAAAGAGGAGGGGGTAGC
ATCTGACAAGTCTTTACGTTCCCTGTGTTCAAAGATACGCTTTGGGGGCC
TCCTCATTGGAGAGGATGGCACCTCCTCCTCCCCCTCCTCCTCCCCCTCC
TCGCCATCGTCGTCTTCTTCTTGTCCACCACTTGAGGTACGCTCAACTTT
TAAAACGCTATGCACATACGCACCACTCCCCTCCCTCCTTTCCTCCTTCC
TTCCCCCTCCTTCCCCTCCTCCCCTCCTTGTGACAAGGCACCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCCCCCCCAGGTGGTAGACTACATCTTT
GTCTCTCGGTTGTGGACCCTCGGAAGAACTCTCGATGAGGCGGTGGGGAA
GCACCAGGCCGCGCTGCGAAAAGTCTATCCTCCCTCTCCTTCTTCTCCTT
CCCACAAGGTGAGTGGCGAGCCCTGCCTTCCCTCCATCCCTCCCTCCCTT
CCTTCCTTCTTCCCTCCCCTGCGTGAACCTCGATTCTGCCGATAAATACA
ACCTCCCCCCCTCCTTCCCTACGTCCCTAGCCCTCCCCTACTTCCTACAC
CTTCCTGAATGAGCGCACTGGCCTCTCCCTCCATCCTTTCCTCGGCCGCT
CCCTCCTCGACCTCGCTTCGGCCAAGCTCGTCGATGACTATGAGTCTCTC
ATCCTTCTTCCTTTCAGTGAAGAGGGGGGGAAAGAAGAGGGAGAAAATGA
GGGAGCGAAAGAGGGAGAGGCTGCTGCGAGAGAAGGAGGGGAGGAAGGAG
AGAAGGAAGGGACAACAATGACAAAAACAGCAGCAGAAGCGGTAGCAGTA
GCTACCCAAAAATCAAAGACGATCACAGCGGCAGTGGCAGCAGCAGTAGA
GCCAATGAGCACAGAGGTAGAAGACGGACAGAGTGAAGGGAAAGGAGAAG
CTTCCCTTCCTCCATCTCTCACCTTGTACATCACCCAAGGTTCCTCTGTC
TCTCACCCTCTCGTCTTTCCCTTGTCCGAGTGGCCCTCCCTATGTACCTC
TGACCTACAAGAACGTGTGTGGACTGCTACAGGAATTAGACCTGAGCGGC
AAAAATTGTTGTTCAAGGGCGTGATGGAGGGGGGAGGAAAGAAACTCTGT
GAATGGAAAGGCCTCCGAGACGGGAGCAAGATCACTCTCATGACGAAGAA
GTAAAAAGGACCAGACGACGAACGAAAGGGAATGAGATGCGCGCCGCACA
TGTGCATTCTTTTGGAGG back to topCoding sequence (CDS) from alignment at chr28:515699..518266- >NO28G01650.1 ID=NO28G01650.1|Name=NO28G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr28:515699..518266- (Nannochloropsis oceanica)
ATGTCAGCGCACTACGGCGATAAGTGTGCCTTGTGCGGGAAGAACGACTT
CCTGCCGCTCAAGTGTGATTTGTGCGCACTTCTTCTTTGCACGGAACATA
TGGCCCCGTTTGCACACCCCTGCGCGGGGCGGGCGGACAACGTCACCATC
GCTCGTCCCGAGGCAGTGGGCTTAGGCAAAGCTCTGGCTGACGAAATGGC
TGATGTTGCTCGCCGCTTTGAGGGGAAGGGCGAGTGGTCGCAGAAGGTGC
ACATCCGAGTCAAGGGTAGCGGTGCCGCACTAGCTTCTTCCTTCCAAAAA
GAAAACAAATTTCTTCGAGCTTACCGGGCAAAGGCGAAGGGAGGGAGAAG
CAACAGCAAAGGCCAGCGCATGTCGGACACGGTGCGCCGAATGCTGATGA
AGGGAAAAGCGGGAGGGAGGAGCGGCCTGCACCAGGACGATCGTTTTTAT
CTCGAGATACGCTTTGGGGGCCTCCTCATTGGAGAGGATGGCACCTCCTC
CTCCCCCTCCTCCTCCCCCTCCTCGCCATCGTCGTCTTCTTCTTGTCCAC
CACTTGAGGTGGTAGACTACATCTTTGTCTCTCGGTTGTGGACCCTCGGA
AGAACTCTCGATGAGGCGGTGGGGAAGCACCAGGCCGCGCTGCGAAAAGT
CTATCCTCCCTCTCCTTCTTCTCCTTCCCACAAGCCCTCCCCTACTTCCT
ACACCTTCCTGAATGAGCGCACTGGCCTCTCCCTCCATCCTTTCCTCGGC
CGCTCCCTCCTCGACCTCGCTTCGGCCAAGCTCGTCGATGACTATGAGTC
TCTCATCCTTCTTCCTTTCAGTGAAGAGGGGGGGAAAGAAGAGGGAGAAA
ATGAGGGAGCGAAAGAGGGAGAGGCTGCTGCGAGAGAAGGAGGGGAGGAA
GGAGAGAAGGAAGGGACAACAATGACAAAAACAGCAGCAGAAGCGGTAGC
AGTAGCTACCCAAAAATCAAAGACGATCACAGCGGCAGTGGCAGCAGCAG
TAGAGCCAATGAGCACAGAGGTAGAAGACGGACAGAGTGAAGGGAAAGGA
GAAGCTTCCCTTCCTCCATCTCTCACCTTGTACATCACCCAAGGTTCCTC
TGTCTCTCACCCTCTCGTCTTTCCCTTGTCCGAGTGGCCCTCCCTATGTA
CCTCTGACCTACAAGAACGTGTGTGGACTGCTACAGGAATTAGACCTGAG
CGGCAAAAATTGTTGTTCAAGGGCGTGATGGAGGGGGGAGGAAAGAAACT
CTGTGAATGGAAAGGCCTCCGAGACGGGAGCAAGATCACTCTCATGACGA
AGAAGTAA back to top
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