NO28G01650.3, NO28G01650.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01650.3
Unique NameNO28G01650.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1362
Alignment locationchr28:515699..518266 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:515699..518266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01650.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01650NO28G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01650.3NO28G01650.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01650.3.cds1NO28G01650.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01650.3.cds2NO28G01650.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01650.3.cds3NO28G01650.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01650.3.cds4NO28G01650.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01650.3.cds5NO28G01650.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01650.3.cds6NO28G01650.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01650.3 ID=NO28G01650.3|Name=NO28G01650.3|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ACCACAGCCAGAGTTACGCGGTAGCCTACACATCACATTTTACTTTCCCG
CCTCGACGGAAATGTCAGCGCACTACGGCGATAAGTGTGCCTTGTGCGGG
AAGAACGACTTCCTGCCGCTCAACGGACAACGTCACCATCGCTCGTCCCG
AGGCAGTGGGCTTAGGCAAAGCTCTGGCTGACGAAATGGCTGATGTTGCT
CGCCGCTTTGAGGGGAAGGGCGAGTGGTCGCAGAAGGTGCACATCCGAGT
CAAGGGTAGCGGTGCCGCACTAGCTTCTTCCTTCCAAAAAGAAAACAAAT
TTCTTCGAGCTTACCGGGCAAAGGCGAAGGGAGGGAGAAGCAACAGCAAA
GGCCAGCGCATGTCGGACACGGTGCGCCGAATGCTGATGAAGGGAAAAGC
GGGAGGGAGGAGCGGCCTGCACCAGGACGATCGTTTTTATCTCGAGATAC
GCTTTGGGGGCCTCCTCATTGGAGAGGATGGCACCTCCTCCTCCCCCTCC
TCCTCCCCCTCCTCGCCATCGTCGTCTTCTTCTTGTCCACCACTTGAGGT
GGTAGACTACATCTTTGTCTCTCGGTTGTGGACCCTCGGAAGAACTCTCG
ATGAGGCGGTGGGGAAGCACCAGGCCGCGCTGCGAAAAGTCTATCCTCCC
TCTCCTTCTTCTCCTTCCCACAAGCCCTCCCCTACTTCCTACACCTTCCT
GAATGAGCGCACTGGCCTCTCCCTCCATCCTTTCCTCGGCCGCTCCCTCC
TCGACCTCGCTTCGGCCAAGCTCGTCGATGACTATGAGTCTCTCATCCTT
CTTCCTTTCAGTGAAGAGGGGGGGAAAGAAGAGGGAGAAAATGAGGGAGC
GAAAGAGGGAGAGGCTGCTGCGAGAGAAGGAGGGGAGGAAGGAGAGAAGG
AAGGGACAACAATGACAAAAACAGCAGCAGAAGCGGTAGCAGTAGCTACC
CAAAAATCAAAGACGATCACAGCGGCAGTGGCAGCAGCAGTAGAGCCAAT
GAGCACAGAGGTAGAAGACGGACAGAGTGAAGGGAAAGGAGAAGCTTCCC
TTCCTCCATCTCTCACCTTGTACATCACCCAAGGTTCCTCTGTCTCTCAC
CCTCTCGTCTTTCCCTTGTCCGAGTGGCCCTCCCTATGTACCTCTGACCT
ACAAGAACGTGTGTGGACTGCTACAGGAATTAGACCTGAGCGGCAAAAAT
TGTTGTTCAAGGGCGTGATGGAGGGGGGAGGAAAGAAACTCTGTGAATGG
AAAGGCCTCCGAGACGGGAGCAAGATCACTCTCATGACGAAGAAGTAAAA
AGGACCAGACGACGAACGAAAGGGAATGAGATGCGCGCCGCACATGTGCA
TTCTTTTGGAGG
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protein sequence of NO28G01650.3

>NO28G01650.3-protein ID=NO28G01650.3-protein|Name=NO28G01650.3|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MADVARRFEGKGEWSQKVHIRVKGSGAALASSFQKENKFLRAYRAKAKGG
RSNSKGQRMSDTVRRMLMKGKAGGRSGLHQDDRFYLEIRFGGLLIGEDGT
SSSPSSSPSSPSSSSSCPPLEVVDYIFVSRLWTLGRTLDEAVGKHQAALR
KVYPPSPSSPSHKPSPTSYTFLNERTGLSLHPFLGRSLLDLASAKLVDDY
ESLILLPFSEEGGKEEGENEGAKEGEAAAREGGEEGEKEGTTMTKTAAEA
VAVATQKSKTITAAVAAAVEPMSTEVEDGQSEGKGEASLPPSLTLYITQG
SSVSHPLVFPLSEWPSLCTSDLQERVWTATGIRPERQKLLFKGVMEGGGK
KLCEWKGLRDGSKITLMTKK*
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mRNA from alignment at chr28:515699..518266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01650.3 ID=NO28G01650.3|Name=NO28G01650.3|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp|location=Sequence derived from alignment at chr28:515699..518266- (Nannochloropsis oceanica)
ACCACAGCCAGAGTTACGCGGTAGCCTACACATCACATTTTACTTTCCCG CCTCGACGGAAATGTCAGCGCACTACGGCGATAAGTGTGCCTTGTGCGGG AAGAACGACTTCCTGCCGCTCAAGTGCGTTGTGGGGAGTTACGGAGGGAG GGCAGGGAGGGAGGGCAGGGAGGGAGGGCAGTGAAGGGAAGGAGGAAGAG GTACAAAGGGTCTACAGATGCACTGCATGGACGCGTCGCACATGCTCTTA TACATTCATTTTCCGAACATTTTTGTTTTCGTTATGTGCATAGGTGTGAT TTGTGCGCACTTCTTCTTTGCACGGAACATATGGCCCCGTTTGCACACCC CTGCGCGGGGCGGGGTGAGCAGAGAGGGGAGAATGGGAGAGGGAGGGGAG GGGGGCATAGAGCTTGAGTCAGAGAGGCGGAATAGCAAGTGAAATGAAAG CTTCTGGATATTGTCTATGCATGCGTAGGGCCTTTGCGCTCGCTTCTTCC CACCCATTTCTTCCCTCCCTCTTACCCTCCCTCCCTCCCTCCCTCCCTTT TTCCGCAGCGGACAACGTCACCATCGCTCGTCCCGAGGCAGTGGGCTTAG GCAAAGCTCTGGCTGACGAAATGGCTGATGTTGCTCGCCGCTTTGAGGGG AAGGGCGAGGTAAGGAACGAGGGAGTGAAGGAGGAAGAGGAAGGGAGGGA GGGAGGGGGGTAGGACCTCTCCCAGGCATCCTCCCTACGCAAATTGAACT TCATCCCTCCCTCTCTCCCTCCCTCCCTCCCTTCTTCCCTCCCTCCCCCC GTCTCCAGTGGTCGCAGAAGGTGCACATCCGAGTCAAGGGTAGCGGTGCC GCACTAGCTTCTTCCTTCCAAAAAGAAAACAAATTTCTTCGAGCTTACCG GGCAAAGGCGAAGGGAGGTAGGGAGGGAGGGAGGGGGGGAGAGAAGGAGA GAGGGGATCAGAAAGGGAGGAAAGGAGGAGTTAGAGAGGAAGGGAGGGAG GGAATGAGAGAGGGATGGCATAAAGGATGCTTTCATCCACCTCACCCATC CAACTTTCATTTCTTTCCTCCCTTCCTTCCTCGGCTGAGAATGCTCTTCT GTGTCTGTCAAAGATGTCCACTATTTCTCTCTCCCCCCCTTCCTCCCTCC CTTTCTCTCTCCCTCCCTTCCTCCTCAGGGAGAAGCAACAGCAAAGGCCA GCGCATGTCGGACACGGTGCGCCGAATGCTGATGAAGGGAAAAGCGGGAG GGAGGAGCGGCCTGCACCAGGACGATCGTTTTTATCTCGAGGTAAGTAGG CAGGGAGGGAGGGAGGGAGAGGGGAAGGAAGGGAAAGAGGAGGGGGTAGC ATCTGACAAGTCTTTACGTTCCCTGTGTTCAAAGATACGCTTTGGGGGCC TCCTCATTGGAGAGGATGGCACCTCCTCCTCCCCCTCCTCCTCCCCCTCC TCGCCATCGTCGTCTTCTTCTTGTCCACCACTTGAGGTACGCTCAACTTT TAAAACGCTATGCACATACGCACCACTCCCCTCCCTCCTTTCCTCCTTCC TTCCCCCTCCTTCCCCTCCTCCCCTCCTTGTGACAAGGCACCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCCCCCCCAGGTGGTAGACTACATCTTT GTCTCTCGGTTGTGGACCCTCGGAAGAACTCTCGATGAGGCGGTGGGGAA GCACCAGGCCGCGCTGCGAAAAGTCTATCCTCCCTCTCCTTCTTCTCCTT CCCACAAGGTGAGTGGCGAGCCCTGCCTTCCCTCCATCCCTCCCTCCCTT CCTTCCTTCTTCCCTCCCCTGCGTGAACCTCGATTCTGCCGATAAATACA ACCTCCCCCCCTCCTTCCCTACGTCCCTAGCCCTCCCCTACTTCCTACAC CTTCCTGAATGAGCGCACTGGCCTCTCCCTCCATCCTTTCCTCGGCCGCT CCCTCCTCGACCTCGCTTCGGCCAAGCTCGTCGATGACTATGAGTCTCTC ATCCTTCTTCCTTTCAGTGAAGAGGGGGGGAAAGAAGAGGGAGAAAATGA GGGAGCGAAAGAGGGAGAGGCTGCTGCGAGAGAAGGAGGGGAGGAAGGAG AGAAGGAAGGGACAACAATGACAAAAACAGCAGCAGAAGCGGTAGCAGTA GCTACCCAAAAATCAAAGACGATCACAGCGGCAGTGGCAGCAGCAGTAGA GCCAATGAGCACAGAGGTAGAAGACGGACAGAGTGAAGGGAAAGGAGAAG CTTCCCTTCCTCCATCTCTCACCTTGTACATCACCCAAGGTTCCTCTGTC TCTCACCCTCTCGTCTTTCCCTTGTCCGAGTGGCCCTCCCTATGTACCTC TGACCTACAAGAACGTGTGTGGACTGCTACAGGAATTAGACCTGAGCGGC AAAAATTGTTGTTCAAGGGCGTGATGGAGGGGGGAGGAAAGAAACTCTGT GAATGGAAAGGCCTCCGAGACGGGAGCAAGATCACTCTCATGACGAAGAA GTAAAAAGGACCAGACGACGAACGAAAGGGAATGAGATGCGCGCCGCACA TGTGCATTCTTTTGGAGG
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Coding sequence (CDS) from alignment at chr28:515699..518266-

>NO28G01650.3 ID=NO28G01650.3|Name=NO28G01650.3|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr28:515699..518266- (Nannochloropsis oceanica)
ATGGCTGATGTTGCTCGCCGCTTTGAGGGGAAGGGCGAGTGGTCGCAGAA
GGTGCACATCCGAGTCAAGGGTAGCGGTGCCGCACTAGCTTCTTCCTTCC
AAAAAGAAAACAAATTTCTTCGAGCTTACCGGGCAAAGGCGAAGGGAGGG
AGAAGCAACAGCAAAGGCCAGCGCATGTCGGACACGGTGCGCCGAATGCT
GATGAAGGGAAAAGCGGGAGGGAGGAGCGGCCTGCACCAGGACGATCGTT
TTTATCTCGAGATACGCTTTGGGGGCCTCCTCATTGGAGAGGATGGCACC
TCCTCCTCCCCCTCCTCCTCCCCCTCCTCGCCATCGTCGTCTTCTTCTTG
TCCACCACTTGAGGTGGTAGACTACATCTTTGTCTCTCGGTTGTGGACCC
TCGGAAGAACTCTCGATGAGGCGGTGGGGAAGCACCAGGCCGCGCTGCGA
AAAGTCTATCCTCCCTCTCCTTCTTCTCCTTCCCACAAGCCCTCCCCTAC
TTCCTACACCTTCCTGAATGAGCGCACTGGCCTCTCCCTCCATCCTTTCC
TCGGCCGCTCCCTCCTCGACCTCGCTTCGGCCAAGCTCGTCGATGACTAT
GAGTCTCTCATCCTTCTTCCTTTCAGTGAAGAGGGGGGGAAAGAAGAGGG
AGAAAATGAGGGAGCGAAAGAGGGAGAGGCTGCTGCGAGAGAAGGAGGGG
AGGAAGGAGAGAAGGAAGGGACAACAATGACAAAAACAGCAGCAGAAGCG
GTAGCAGTAGCTACCCAAAAATCAAAGACGATCACAGCGGCAGTGGCAGC
AGCAGTAGAGCCAATGAGCACAGAGGTAGAAGACGGACAGAGTGAAGGGA
AAGGAGAAGCTTCCCTTCCTCCATCTCTCACCTTGTACATCACCCAAGGT
TCCTCTGTCTCTCACCCTCTCGTCTTTCCCTTGTCCGAGTGGCCCTCCCT
ATGTACCTCTGACCTACAAGAACGTGTGTGGACTGCTACAGGAATTAGAC
CTGAGCGGCAAAAATTGTTGTTCAAGGGCGTGATGGAGGGGGGAGGAAAG
AAACTCTGTGAATGGAAAGGCCTCCGAGACGGGAGCAAGATCACTCTCAT
GACGAAGAAGTAA
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Synonyms
Publications