NO30G00170, NO30G00170 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO30G00170 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana]) HSP 1 Score: 87.0 bits (214), Expect = 6.400e-14 Identity = 54/144 (37.50%), Postives = 76/144 (52.78%), Query Frame = 0 Query: 20 PLVVKKGRIVTVTQSFVV-ENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKI-KHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLEL 162 PL + G+ V VT VV ++ GR A + P +D F P N + NKTSK K D+G++ +KI PNTWRPK + I DEGD ++ LP DG L ++YKIT +R+G+ +PSGT++ L Sbjct: 195 PLFARAGKTVRVTADLVVLDDQPGRERAVRALPT----------ADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPL 326
BLAST of NO30G00170 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana]) HSP 1 Score: 82.8 bits (203), Expect = 1.200e-12 Identity = 54/143 (37.76%), Postives = 72/143 (50.35%), Query Frame = 0 Query: 21 LVVKKGRIVTVTQSFVVENFNGRRLATQDPPI-QAGLSTAGNFSDWNFDSDFTPLSNADKI-KHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLEL 162 L + G+ V VT VV D PI + A D F P N + NKTSK K D+G++ +KI PNTWRPK + I DEGD ++ LP DG L ++YKIT +R+G+ +PSGTV+ L Sbjct: 195 LFARAGKTVRVTADLVV---------LDDQPIGRKRAVRALETDDIVFACSLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPL 326
BLAST of NO30G00170 vs. NCBI_GenBank
Match: EWM22885.1 (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana]) HSP 1 Score: 82.8 bits (203), Expect = 1.200e-12 Identity = 51/138 (36.96%), Postives = 70/138 (50.72%), Query Frame = 0 Query: 21 LVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIK-HNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGT 158 L VK GR T+T SF++ ++ + PL N+ K H +K K A D+ VT++ +I PNTWRPK AN T T + LP DGL L+++YKIT K+R+G+GIPSGT Sbjct: 52 LSVKAGRQATITTSFLISEL------------------PDTVTEAFYGITVEPLVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGT---GTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGT 168
BLAST of NO30G00170 vs. NCBI_GenBank
Match: XP_005853972.1 (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >EKU22388.1 hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 82.0 bits (201), Expect = 2.100e-12 Identity = 50/137 (36.50%), Postives = 75/137 (54.74%), Query Frame = 0 Query: 21 LVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGT 158 L VK GR T+T SF++ + + G++ + +PLS+ + NKTS K A D+ VT++ +I PNTWRPK AN T T + +P +GL L+++YK+T K+R+G+GIPSGT Sbjct: 32 LSVKAGRQATITTSFLIS-----EVPNNVTEVLYGITV---------EPLVSPLSSKNHTAKNKTS---KFAGDVDVTLRKTRISPNTWRPKIFANGTGT---GTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGT 148
BLAST of NO30G00170 vs. NCBI_GenBank
Match: EWM30157.1 (hypothetical protein Naga_100115g3 [Nannochloropsis gaditana]) HSP 1 Score: 75.5 bits (184), Expect = 1.900e-10 Identity = 59/195 (30.26%), Postives = 90/195 (46.15%), Query Frame = 0 Query: 1 MKLTVSSALLAGVALFST--------------MPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLELPFNFNGPDMGFPDILEVLVR 182 MK S LAG+ALFS+ PL V+ G +T T +FVV +F DP I G +T G + L+N ++ K S D AN+L I+ ++I PN WRPK T+ E + +P++G L + YK+ K+RVG+G+ TV ++ F + L+V ++ Sbjct: 4 MKSIGLSLFLAGMALFSSTTFVDAQVIAQAMVKPLAVRPGGRITATLNFVVSSFASN---ATDPAIAVGFATLG-------AQELAALNNKNRTTKGKAS-MDPLANEL--VIRGSRISPNKWRPKLR---TNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTLIAGSYIFEESLDVYIK 182
BLAST of NO30G00170 vs. NCBI_GenBank
Match: EWM29458.1 (hypothetical protein Naga_100083g24 [Nannochloropsis gaditana]) HSP 1 Score: 74.3 bits (181), Expect = 4.300e-10 Identity = 56/179 (31.28%), Postives = 78/179 (43.58%), Query Frame = 0 Query: 1 MKLTVSSALLAGVALFSTM--------------------PLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVL 160 MK +SS +LA + S + P+ VK G VT+T SF+ R+L + N +D D LSN +K K K+ KH N V + ++I PNTWRPK +NIT G +P GL +YKI K R+G+ PSG+V+ Sbjct: 1 MKFAISSLILASAVIISAIGRATAQLFPDFDAIGHSTVKPISVKAGGRVTLTTSFLFLETRRRQLRELAFADEILYWATPNEADIPAYGDLEELSNKNKTK-TSHPKSSKHGNSTDVRLVRSRIMPNTWRPKLRSNIT----GSTNFMSIPTTGLVALEDYKIINKFRIGKRYPSGSVI 174
BLAST of NO30G00170 vs. NCBI_GenBank
Match: XP_005854180.1 (hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526] >XP_005855596.1 hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >EKU20759.1 hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >EKU22181.1 hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 66.2 bits (160), Expect = 1.200e-7 Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0 Query: 87 KADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVL 160 K+ KH N V + ++I PNTWRPK +NIT G +P GL + ++YKI K R+G+ PSGTV+ Sbjct: 41 KSSKHGNSTDVRLVRSRIIPNTWRPKLRSNIT----GSTNFMSVPTTGLVVLKDYKIINKFRIGKRYPSGTVI 109 The following BLAST results are available for this feature:
BLAST of NO30G00170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 7
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO30G00170 ID=NO30G00170|Name=NO30G00170|organism=Nannochloropsis oceanica|type=gene|length=1084bpback to top protein sequence of NO30G00170.1 >NO30G00170.1-protein ID=NO30G00170.1-protein|Name=NO30G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bpback to top Synonyms
Publications
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