NO30G00170, NO30G00170 (gene) Nannochloropsis oceanica

Overview
NameNO30G00170
Unique NameNO30G00170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1084
Alignment locationchr30:77251..78334 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:77251..78334 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO30G00170 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 87.0 bits (214), Expect = 6.400e-14
Identity = 54/144 (37.50%), Postives = 76/144 (52.78%), Query Frame = 0
Query:   20 PLVVKKGRIVTVTQSFVV-ENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKI-KHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLEL 162
            PL  + G+ V VT   VV ++  GR  A +  P           +D  F     P  N   +   NKTSK  K   D+G++   +KI PNTWRPK +  I   DEGD  ++ LP DG  L ++YKIT  +R+G+ +PSGT++ L
Sbjct:  195 PLFARAGKTVRVTADLVVLDDQPGRERAVRALPT----------ADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPL 326          
BLAST of NO30G00170 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-12
Identity = 54/143 (37.76%), Postives = 72/143 (50.35%), Query Frame = 0
Query:   21 LVVKKGRIVTVTQSFVVENFNGRRLATQDPPI-QAGLSTAGNFSDWNFDSDFTPLSNADKI-KHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLEL 162
            L  + G+ V VT   VV           D PI +     A    D  F     P  N   +   NKTSK  K   D+G++   +KI PNTWRPK +  I   DEGD  ++ LP DG  L ++YKIT  +R+G+ +PSGTV+ L
Sbjct:  195 LFARAGKTVRVTADLVV---------LDDQPIGRKRAVRALETDDIVFACSLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPL 326          
BLAST of NO30G00170 vs. NCBI_GenBank
Match: EWM22885.1 (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-12
Identity = 51/138 (36.96%), Postives = 70/138 (50.72%), Query Frame = 0
Query:   21 LVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIK-HNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGT 158
            L VK GR  T+T SF++                         ++  +     PL N+   K H   +K  K A D+ VT++  +I PNTWRPK  AN T T     +   LP DGL L+++YKIT K+R+G+GIPSGT
Sbjct:   52 LSVKAGRQATITTSFLISEL------------------PDTVTEAFYGITVEPLVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGT---GTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGT 168          
BLAST of NO30G00170 vs. NCBI_GenBank
Match: XP_005853972.1 (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >EKU22388.1 hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 82.0 bits (201), Expect = 2.100e-12
Identity = 50/137 (36.50%), Postives = 75/137 (54.74%), Query Frame = 0
Query:   21 LVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGT 158
            L VK GR  T+T SF++       +      +  G++          +   +PLS+ +    NKTS   K A D+ VT++  +I PNTWRPK  AN T T     +   +P +GL L+++YK+T K+R+G+GIPSGT
Sbjct:   32 LSVKAGRQATITTSFLIS-----EVPNNVTEVLYGITV---------EPLVSPLSSKNHTAKNKTS---KFAGDVDVTLRKTRISPNTWRPKIFANGTGT---GTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGT 148          
BLAST of NO30G00170 vs. NCBI_GenBank
Match: EWM30157.1 (hypothetical protein Naga_100115g3 [Nannochloropsis gaditana])

HSP 1 Score: 75.5 bits (184), Expect = 1.900e-10
Identity = 59/195 (30.26%), Postives = 90/195 (46.15%), Query Frame = 0
Query:    1 MKLTVSSALLAGVALFST--------------MPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLELPFNFNGPDMGFPDILEVLVR 182
            MK    S  LAG+ALFS+               PL V+ G  +T T +FVV +F        DP I  G +T G         +   L+N ++    K S  D  AN+L   I+ ++I PN WRPK     T+  E     + +P++G  L + YK+  K+RVG+G+   TV ++          F + L+V ++
Sbjct:    4 MKSIGLSLFLAGMALFSSTTFVDAQVIAQAMVKPLAVRPGGRITATLNFVVSSFASN---ATDPAIAVGFATLG-------AQELAALNNKNRTTKGKAS-MDPLANEL--VIRGSRISPNKWRPKLR---TNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTLIAGSYIFEESLDVYIK 182          
BLAST of NO30G00170 vs. NCBI_GenBank
Match: EWM29458.1 (hypothetical protein Naga_100083g24 [Nannochloropsis gaditana])

HSP 1 Score: 74.3 bits (181), Expect = 4.300e-10
Identity = 56/179 (31.28%), Postives = 78/179 (43.58%), Query Frame = 0
Query:    1 MKLTVSSALLAGVALFSTM--------------------PLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVL 160
            MK  +SS +LA   + S +                    P+ VK G  VT+T SF+      R+L       +       N +D     D   LSN +K K     K+ KH N   V +  ++I PNTWRPK  +NIT    G      +P  GL    +YKI  K R+G+  PSG+V+
Sbjct:    1 MKFAISSLILASAVIISAIGRATAQLFPDFDAIGHSTVKPISVKAGGRVTLTTSFLFLETRRRQLRELAFADEILYWATPNEADIPAYGDLEELSNKNKTK-TSHPKSSKHGNSTDVRLVRSRIMPNTWRPKLRSNIT----GSTNFMSIPTTGLVALEDYKIINKFRIGKRYPSGSVI 174          
BLAST of NO30G00170 vs. NCBI_GenBank
Match: XP_005854180.1 (hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526] >XP_005855596.1 hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >EKU20759.1 hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >EKU22181.1 hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.2 bits (160), Expect = 1.200e-7
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0
Query:   87 KADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVL 160
            K+ KH N   V +  ++I PNTWRPK  +NIT    G      +P  GL + ++YKI  K R+G+  PSGTV+
Sbjct:   41 KSSKHGNSTDVRLVRSRIIPNTWRPKLRSNIT----GSTNFMSVPTTGLVVLKDYKIINKFRIGKRYPSGTVI 109          
The following BLAST results are available for this feature:
BLAST of NO30G00170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM22729.16.400e-1437.50hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
EWM22739.11.200e-1237.76hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
EWM22885.11.200e-1236.96hypothetical protein Naga_100160g3 [Nannochloropsi... [more]
XP_005853972.12.100e-1236.50hypothetical protein NGA_0434301 [Nannochloropsis ... [more]
EWM30157.11.900e-1030.26hypothetical protein Naga_100115g3 [Nannochloropsi... [more]
EWM29458.14.300e-1031.28hypothetical protein Naga_100083g24 [Nannochlorops... [more]
XP_005854180.11.200e-742.47hypothetical protein NGA_0188501 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00170.1NO30G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00170.1NO30G00170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00170 ID=NO30G00170|Name=NO30G00170|organism=Nannochloropsis oceanica|type=gene|length=1084bp
ATGAAGTTGACTGTCTCCTCCGCCCTCCTGGCCGGCGTCGCCCTCTTCTC
CACCATGgtaagttttgacacatctacacaagcatccaattccaattcca
gtccctgccccataaatcgacgtcgcgttcatgctatacaatacctcccc
cctcctctctttcttgctctatccttcctcccttatcttacagcgctgtc
agcgccgacggcattgtccaaacctacgccaagCCCCTGGTGGTGAAGAA
GGGTAGGATCGTGACGGTCACCCAGAGCTTTGTGGTCGAGAACTTTAACG
GCCGCCGTCTTGCTACTCAGGACCCTCCTATCCAGGCTGGGgtacgttga
aagaagaaggtagaggaaggagaggaagggagagagggcttgcccgagca
gattcggtgccgggccggttggcatgctcacaaacgactcgacgcgtttt
tctttctcgtcgcccttacaaatataggtgaatctcactccttctttctt
tccttcccttcctttccctcccaacactccctgtctccatccaccaacct
ctccaaagCTCTCGACTGCCGGGAATTTTTCTGATTGGAACTTCGACAGC
GACTTTACACCCCTCTCCAATGCTGACAAAATAAAACACAACAAGACGAG
CAAGGCGGACAAGCACGCGAATGACCTCGGGGTCACCATCAAGTCGGCCA
AGATCTTCCCCAATACGTGGAGGCCTAAgtgagtaagacaggcgggagga
gagggaagaaggagggggggaagggaggtatattaattggaatctctcct
tgttcagccctacatcgaatcttaatgcctcctcccctctctttctctcc
tctatttgactcgtccctaacagGGAGTCTGCGAACATTACCTCGACCGA
CGAAGGCGACGTCGCCATCTTCGAGCTCCCACAGGACGGCCTGACATTGA
ACAGGGAGTACAAGATCACCTACAAGGTGCGCGTTGGGAGGGGCATCCCC
TCTGGTACCGTCCTCGAGCTTCCGTTTAACTTCAACGGCCCCGACATGGG
TTTCCCAGATATCTTGGAGGTGCTTGTCAGGTAA
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protein sequence of NO30G00170.1

>NO30G00170.1-protein ID=NO30G00170.1-protein|Name=NO30G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MKLTVSSALLAGVALFSTMPLVVKKGRIVTVTQSFVVENFNGRRLATQDP
PIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTSKADKHANDLGVTIK
SAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVG
RGIPSGTVLELPFNFNGPDMGFPDILEVLVR*
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Synonyms
Publications