NO29G01540, NO29G01540 (gene) Nannochloropsis oceanica

Overview
NameNO29G01540
Unique NameNO29G01540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length967
Alignment locationchr29:483167..484133 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:483167..484133 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO29G01540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01540.1NO29G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01540.1NO29G01540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01540 ID=NO29G01540|Name=NO29G01540|organism=Nannochloropsis oceanica|type=gene|length=967bp
ATGCCTCTGGTCACTGCAGCAGGTGAGTCAGGGGGAAGAGGGCGACGGGG
CGACGTGGAGACGACTGGATCCGAAGGTGGGCTACAGGCGGAAAGACGGC
GCACCTGGAGAGCGGGAAAGAGAAGTAAAGGAACATTAGTGCGAAAAAGT
GTCAAGCCACGgtaaggtcatatgagcttggaggtcacatgacaggcact
ttattagggtaggcctttcatgataagaaatgtgtccgttgctttcgatc
cccggagtataaattcctcgtgaacctcacgcacggtttttccttccttt
cgagccgtgcactggaccattcatgaggacgtgtaccgcatatcggggtc
tatgtttattgtggcctcagcccctgtgtcgcacccccctccatcgactt
gaactcatcgcacgaacccaggtatcctccgatctgcctacccaccctca
cacagacatataccagcccgcgccaaagtcccataagcaagcaagcaaac
atgccgatagcccctccgcgttgttctcagcaccgtgtcatcatcagtaa
actgtggtccttttgactccttgtcagTCTTGCCTTGTTGTCTTCCTCCC
GAGTCCTAGTCAGgtgtgtatttggacctgatttgtttcgtctatcaagc
ccggggtacctgtgctttccatcggaggtggctcggactactttacctat
gccgcctttgagccttcatcaatcatctcgtatcaatcctattacactcc
aattcctatcgcacacagTGTCCAAGGAGGAGATGCTGTTCTTGCTACTG
ATGAGCTCGCCGAGTTTGGGATTTCTGCAAGTGTCAGCGAGAACGAGGAC
GTTGACAAAGCATTTAAGAAGCTAAATTTGCACCCTACCATGGTTTCGAT
GAACATGACCCGCCCACCGACGGTGCAATTGCTGTACCGGGCTGACCGAT
TGGTGAACTGTGCCTGA
back to top

protein sequence of NO29G01540.1

>NO29G01540.1-protein ID=NO29G01540.1-protein|Name=NO29G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MPLVTAAGESGGRGRRGDVETTGSEGGLQAERRRTWRAGKRSKGTLVRKS
VKPRLALLSSSRVLVSVQGGDAVLATDELAEFGISASVSENEDVDKAFKK
LNLHPTMVSMNMTRPPTVQLLYRADRLVNCA*
back to top
Synonyms
Publications