NO29G01440, NO29G01440 (gene) Nannochloropsis oceanica

Overview
NameNO29G01440
Unique NameNO29G01440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2461
Alignment locationchr29:458102..460562 -

Link to JBrowse

Properties
Property NameValue
DescriptionFilamentous hemagglutinin family N-terminal domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:458102..460562 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO29G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01440.1NO29G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|190212gene_8322Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01440.1NO29G01440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01440 ID=NO29G01440|Name=NO29G01440|organism=Nannochloropsis oceanica|type=gene|length=2461bp
ATGTCACAAGgtatgcacgcacagtgccaatgcgggcagcttagcgccgc
ccaaggctgcacatggacgagcgacgcccacgccccatgaatcctccaaa
tttaaactcaggaactaaaagtagaccccttcccgcgcaccaatacacca
ccaccatacagAGTATAGCCATCATCATCCACCAGCAACTTACACTATGC
GTTCTATGAAGTTCAGCTTCGTGTGCTCCCTGGCCCTGTTTGCTGCCTCA
GCCCTGGCCGCCGAGGACGGCGTCTACACTCCTAACGACCTGGAGGGTGC
CCCGATTACGCTTCCTCCCACCGCCGCCCCCACCAAATCCGTCTACACCC
CTCCTCCGACACCTGCACCCACTAAGGCCGCCTACACGGATCAACCTGTT
GTAGAACCTGAGCCTGCTGATGCACCCACCGCTGCCATCACTTTAGCCCC
GACCGAGAGCCCGACAGGAGTTCCCACTCCTTCGCCCACGAATGCCCCTA
CTGAGGCGCCCACTGCGGCTCCCACGAACGCCCCCACGGCAGTTCCCACG
GCAGCCCCCACCGCAGCCCCCACGGCAGCCCCCACGGCAGCCCCCACGGC
AGCCCCCACCGAGGCTCCTACGAATGCCCCCACGGCGACTCCCACGGCAG
CCCCCACGAACGCTCCGACAGCCTTCCCCACGGCCGCCCCCACCAAGCCT
GTGTACACGCCTCCGCCTACATCTGCGCCCACTGAGTCCCCGACAGCCTT
CCCCACGGCCGCTCCCACTGAGGCCCCGACAGCCTCCCCCACGGCCGCCC
CGACCAAGCCCGTCTACACTCCTCCTCCGACGGCCGCACCCACGGAGGCC
CCCACGGCCGTCCCGACTGAGGCTCCCACGGCTGCACCCACTGAAGCTCC
GACGGCTGCTCCCACGGCTGCCCCCACGGCGACTCCCACGGCTGCTCCCA
CGGCCGTGCCCACTGAGGCCCCCACGGCTGCTCCCACGGCTGCTCCCACG
GCTGCTCCCACGGCCGCACCCACCTCCGCGCCCACTGAGGCCCCCACGGC
TGCTCCCACGGCTGCTCCCACGGTTGCGCCCACAGAAGCTATCGGTACCT
TAGATGCGCCGGAAGAAAACGTGTACACGCCCCCGCCCTACACCTCCAAG
CCCTCCGAACAGGAAGCGGGCGCCAGCAATGGCCGCCGTCTTCGACGAGG
CAGTGCCTAAACAATTATTCCCCACCGTCTCGATTGACTAGTTCCCTCTT
GCGCCTGTCTCTGGCCAGGCCTGTAACTAGGTGCCCTATCTATTGAGGCG
GCGTGTCTGGAGGAGAGGTCGAGTGGCGGGTGTTGGAGAGTTCCGAGGAA
TATTATGCACTTTGAGCAAAAGAGAGAAGCAGTACGAACGCAGCAGAAAA
AGACCAGAACAGGGGAGAAAGGATCAACAGCTAAGGGAAGAATGATGTAC
ACGGATTGGAGAGGGAAAGGGACGAAATAGTAAAAGGACATTAAAACACA
ACCGGGGAATTGGAGTGATGGACGAAGTAAGTGGGTTAGAAAAGTTGTGT
CACCGGACTTGATGGGAAGAGTACGTCCCCGCTAGATGTGTGTGTGATAA
TGTACAATCCCTTGTACAATTATTATTGTTGTCATTATAATTATTGTCAT
TATTATTGTTGTCATTATTATAACATTTGATTCATCCCAAGTCTTGGACC
GACGGCGGATGATGATCAGTGACGTATGCGCTCCGGCAAGACTTAGCTAG
GACGCGTTGGCCATGTTCTATCGATGGACACGATGTGGGACATGGAAGGC
CTACTGGGGAAGCCACACAAGAGCAAGCATCAGTCGAAGAAAGTAGAGAA
GAAAACAAAGCAAGGACAGGGGAATGCACTGTCTCTTCTTCCAAGAAGAT
ACTATCATCATGGTGTGATATAGAGTCGTCTTTTTGTTCGAAAAGTACCA
GGTCAGTGAACCAAAGAATCAAAAACGTGACGAATTAAGGAGTAAGTGTC
CAATTCCTATTGTTTTCGAGCCGCTGACTAGTGGCCCGAAGCCTTGTGAG
TCGTATTAATTAGTCCCATTGCTGCAGAGCGGTAGCAGTTAGTTGAACAG
AAGCACAATGCTCTCTTACAAACCTTTTTTCTGACATACGGTGGCATTCT
CTGGCACATGGGCTGAAAGTATTTTTAAGATACCAAATGGTTGGGAAGGA
AGTAGTTGCATAAGTATCTCGAAGCAGCAGCTTAAGCAGCAAAAAATTGA
GCACCTGTTTGGTCTTGAAGAGAGGACAGAAAAAGAGAAGGGAGATATCT
AGGCATGCAAGAGTGAGCCTCTCGAAAGACGCTGGACAGATTTTAATCGC
AATTTCGGAAAGGGGAGAAACAAGCAAACAACGAGAACAAAAGAGGGAAG
TGACTAAAACTCATGGTAAAAAGGGAACGAAAGGGGCTTGAAGGCTTATT
ACATATCATTC
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protein sequence of NO29G01440.1

>NO29G01440.1-protein ID=NO29G01440.1-protein|Name=NO29G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MSQEYSHHHPPATYTMRSMKFSFVCSLALFAASALAAEDGVYTPNDLEGA
PITLPPTAAPTKSVYTPPPTPAPTKAAYTDQPVVEPEPADAPTAAITLAP
TESPTGVPTPSPTNAPTEAPTAAPTNAPTAVPTAAPTAAPTAAPTAAPTA
APTEAPTNAPTATPTAAPTNAPTAFPTAAPTKPVYTPPPTSAPTESPTAF
PTAAPTEAPTASPTAAPTKPVYTPPPTAAPTEAPTAVPTEAPTAAPTEAP
TAAPTAAPTATPTAAPTAVPTEAPTAAPTAAPTAAPTAAPTSAPTEAPTA
APTAAPTVAPTEAIGTLDAPEENVYTPPPYTSKPSEQEAGASNGRRLRRG
SA*
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Synonyms
Publications