NO29G00620, NO29G00620 (gene) Nannochloropsis oceanica

Overview
NameNO29G00620
Unique NameNO29G00620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1731
Alignment locationchr29:238838..240568 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:238838..240568 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO29G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005174NSK005174Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00620.1NO29G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00620.1NO29G00620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00620 ID=NO29G00620|Name=NO29G00620|organism=Nannochloropsis oceanica|type=gene|length=1731bp
CAGCGACACCTTCTACTGGCCTGTGCGTGCGTGTATCGTGTATATGTGCG
TGTGGGTAGAACGGGGCGTCTTTGAGCGTGTGACAGAAACGGACAGGCAG
AATTTTGTAGCGCCGCATAGCCTCTGCCTCCGAGTCCATGCTTACGGACT
GTAGACCCGACAGGTAGTAGTGTACTGCGAGGTGCCATGGTATTAGAATC
ACACGTAAGTGCCTCCTCCTTGCTTCGCTCGTGCTGCTTGAGAAGTCGGC
GAGTGAAGCGGGCCGCCATCATGATCATGAAGAACGGTAAAATGTGATTC
TTATTGGACAGTCGACAAAGCCACGCCTTTTATTCAAACAGCATGACCAT
GCAACAGCTGGTCTCCCGCAGCCTGTATTATTGTCTTCTCGCAGCGGTGG
CTGTTGCTTACCCCGAGgcaagtcgcgcatcgccatctttcatcattcat
catccatcgggatgagtttagctagccgcaacaacaacacaccgcatctc
cctaacaacatctcacttttcttttccatcccccgccccttcacaaacac
aacgacggcactagGATGGGAAGCAGGCAGAGCCGCGTGGTGCAGCCCGA
GGCCCCGACCAAGGAGGAGGATGGCGGgtaagtcgtgtcgtcgagtcggg
tgaccctttgttccacaggcctattcagtgcctatcggtgccaggcctcg
gaccgcctcgcacccacgtccattttcctgtccttctcatcctccttttc
tcttaggctttccatgagcgtcttcccagcccttaatctcctccaacgag
aaaggctaagacagtggtgccctctggcaagcccttacccacaggcagtt
cctcgcgactcaccctcccttcctcccttccctcccattcatccatccac
cccacagGTTTACCGTGAGCGTCACGCCTGGCCTGGTGTCTTCCCTGCAG
AAAGGCAGCAACAGTGGTGGCGTCGGCCAAGGCCCTGCGGGTCGGCCGGA
GGTAGTAACGACGAAGGAAGAAGCAGAGGAGGTAGCAGCGGCTTACAGGA
ACGGATTGAAGGATGCGGAGGCCAACCTGAGGCACCATCTGGTCACACAA
AAGgtaagcttctcatttcttctattattcctccctttcctttcctcctt
ccctccctccctctttttccccctgtgtcaggatttcaagccgagtcgta
tcttctctcatttttcctttatttttggttaaaaatagacctatatttct
gctcctgctactactgctgtcactgccggcgctacactcaaagctttctc
tccgctcactccttcgctccccccctgtccctccctccctccttcccttc
ccccctccctcccttacagGAGCAATGGACCCAGGAGCTTCTAGAAAGAG
AAGCCCGTCTGGCGGAGTATATATCTGTTGCGGCTGCTGACTTCAAATCC
CGCAAATTCGTTCCTCCCTCCCGCCCCATAGCCTGCGAGGAGGAGGCTGA
GCAGATGGTGGCATGCTACCGGGAAAAAGGCGGGAAAGAGGGAGGGAAGG
AGGGCGGGGTGGTGAAGGGGTGCAATGGGTTGGTGGACTTGTATGAAAAA
TGCGCGCGGAAAGTCGTCCAGGGGCTGGAGGTGAGGCAGTGAGGAGAGAG
GGAGTGAGGGAGGGAGAAAATGATCGACGAAGGAAAGGAGGGCGAGAAGA
GCAAAAAGAAAAGAAATTAATCTTTTGTATC
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protein sequence of NO29G00620.1

>NO29G00620.1-protein ID=NO29G00620.1-protein|Name=NO29G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MGSRQSRVVQPEAPTKEEDGGFTVSVTPGLVSSLQKGSNSGGVGQGPAGR
PEVVTTKEEAEEVAAAYRNGLKDAEANLRHHLVTQKEQWTQELLEREARL
AEYISVAAADFKSRKFVPPSRPIACEEEAEQMVACYREKGGKEGGKEGGV
VKGCNGLVDLYEKCARKVVQGLEVRQ*
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Synonyms
Publications