NO28G00190, NO28G00190 (gene) Nannochloropsis oceanica

Overview
NameNO28G00190
Unique NameNO28G00190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2027
Alignment locationchr28:76556..78582 -

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Properties
Property NameValue
Descriptionubiquitin 8
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:76556..78582 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005515protein binding
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR007836Ribosomal_L41
IPR000626Ubiquitin-like
Homology
[Close]
BLAST of NO28G00190 vs. NCBI_GenBank
Match: CBN74156.1 (similar to ubiquitin and ribosomal protein S27a precursor [Ectocarpus siliculosus])

HSP 1 Score: 77.0 bits (188), Expect = 6.000e-11
Identity = 36/81 (44.44%), Postives = 57/81 (70.37%), Query Frame = 0 
Query:   65 MQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWR 145
            MQ+F+++  G++  L V+   ++  +KAAVE +EF+P++L RL  G   L+ G L++ G+EE  T+ LL+D+ GGMRAKWR
Sbjct:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWR 81
[Close]
BLAST of NO28G00190 vs. NCBI_GenBank
Match: XP_009528701.1 (hypothetical protein PHYSODRAFT_354735 [Phytophthora sojae] >ABS50088.1 rpL41-like protein [Phytophthora sojae] >EGZ14952.1 hypothetical protein PHYSODRAFT_354735 [Phytophthora sojae])

HSP 1 Score: 72.8 bits (177), Expect = 1.100e-9
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 0 
Query:   65 MQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWR 145
            MQLF+++ +GS  TL+VA  A+V  +K AVED E+I +   RLV     LT G L+++ V E  T+++L+D+NGGMRAKWR
Sbjct:    1 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQNF--RLVCAGKQLTSGSLADYAVGECDTLKMLLDVNGGMRAKWR 79
[Close]
BLAST of NO28G00190 vs. NCBI_GenBank
Match: ETP09364.1 (hypothetical protein F441_14771, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 72.4 bits (176), Expect = 1.500e-9
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 0 
Query:   51 LSIQRSVFLPSLATMQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWR 145
            LSIQ  +       MQLF+++ +GS  TL+VA  A+V  +K AVED E+I +   RLV     LT G L+++ V+E  T+++L+ +NGGMRAKWR
Sbjct:   54 LSIQEGI-------MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQNF--RLVCAGKQLTSGSLADYAVDECDTLKMLLSVNGGMRAKWR 139
[Close]
BLAST of NO28G00190 vs. NCBI_GenBank
Match: ETK79640.1 (hypothetical protein L915_14525, partial [Phytophthora parasitica])

HSP 1 Score: 70.9 bits (172), Expect = 4.300e-9
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0 
Query:   51 LSIQRSVFLPSLATMQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWR 145
            LSIQ  +       MQLF+++ +GS  TL+VA  A+V  +K AVED E+I +   RLV     LT G L+++ V E  T+++L+ +NGGMRAKWR
Sbjct:   54 LSIQEGI-------MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQNF--RLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWR 139
[Close]
BLAST of NO28G00190 vs. NCBI_GenBank
Match: ETL33058.1 (hypothetical protein L916_14432, partial [Phytophthora parasitica] >ETL86319.1 hypothetical protein L917_14248, partial [Phytophthora parasitica] >ETM39483.1 hypothetical protein L914_14375, partial [Phytophthora parasitica] >ETO68205.1 hypothetical protein F444_14944, partial [Phytophthora parasitica P1976])

HSP 1 Score: 70.9 bits (172), Expect = 4.300e-9
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0 
Query:   51 LSIQRSVFLPSLATMQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWR 145
            LSIQ  +       MQLF+++ +GS  TL+VA  A+V  +K AVED E+I +   RLV     LT G L+++ V E  T+++L+ +NGGMRAKWR
Sbjct:   54 LSIQEGI-------MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQNF--RLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWR 139
[Close]
BLAST of NO28G00190 vs. NCBI_GenBank
Match: XP_008910700.1 (hypothetical protein PPTG_23686 [Phytophthora parasitica INRA-310] >ETN04030.1 hypothetical protein PPTG_23686 [Phytophthora parasitica INRA-310])

HSP 1 Score: 70.9 bits (172), Expect = 4.300e-9
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0 
Query:   51 LSIQRSVFLPSLATMQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWR 145
            LSIQ  +       MQLF+++ +GS  TL+VA  A+V  +K AVED E+I +   RLV     LT G L+++ V E  T+++L+ +NGGMRAKWR
Sbjct:  172 LSIQEGI-------MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQNF--RLVCAGKKLTSGSLADYAVGECDTLKMLLSVNGGMRAKWR 257
[Close]
BLAST of NO28G00190 vs. NCBI_GenBank
Match: ETP37397.1 (hypothetical protein F442_14796, partial [Phytophthora parasitica P10297])

HSP 1 Score: 70.9 bits (172), Expect = 4.300e-9
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0 
Query:   51 LSIQRSVFLPSLATMQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWR 145
            LSIQ  +       MQLF+++ +GS  TL+VA  A+V  +K AVED E+I +   RLV     LT G L+++ V E  T+++L+ +NGGMRAKWR
Sbjct:   54 LSIQEGI-------MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQNF--RLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWR 139
[Close]
BLAST of NO28G00190 vs. NCBI_GenBank
Match: XP_002898241.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY63356.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 70.9 bits (172), Expect = 4.300e-9
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0 
Query:   51 LSIQRSVFLPSLATMQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWR 145
            LSIQ  +       MQLF+++ +GS  TL+VA  A+V  +K AVED E+I +   RLV     LT G L+++ V E  T+++L+ +NGGMRAKWR
Sbjct:    3 LSIQEGI-------MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQNF--RLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWR 88
[Close]
BLAST of NO28G00190 vs. NCBI_GenBank
Match: ETI39431.1 (hypothetical protein F443_14960 [Phytophthora parasitica P1569] >POM80816.1 Ubiquitin-40S ribosomal protein S27a [Phytophthora palmivora var. palmivora])

HSP 1 Score: 70.5 bits (171), Expect = 5.600e-9
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 0 
Query:   65 MQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWR 145
            MQLF+++ +GS  TL+VA  A+V  +K AVED E+I +   RLV     LT G L+++ V E  T+++L+ +NGGMRAKWR
Sbjct:    1 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQNF--RLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWR 79
[Close]
BLAST of NO28G00190 vs. NCBI_GenBank
Match: OWY98191.1 (hypothetical protein PHMEG_00031100 [Phytophthora megakarya])

HSP 1 Score: 68.2 bits (165), Expect = 2.800e-8
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 0 
Query:   65 MQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWR 145
            MQLF+++ +GS  TL+VA  A+V  +K AVED E+I +   RLV     L  G L+++ V E  T+++L+ +NGGMRAKWR
Sbjct:    1 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQNF--RLVCAGKQLESGSLADYAVGECDTLKMLLSVNGGMRAKWR 79
The following BLAST results are available for this feature:
BLAST of NO28G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN74156.16.000e-1144.44similar to ubiquitin and ribosomal protein S27a pr... [more]
XP_009528701.11.100e-949.38hypothetical protein PHYSODRAFT_354735 [Phytophtho... [more]
ETP09364.11.500e-945.26hypothetical protein F441_14771, partial [Phytopht... [more]
ETK79640.14.300e-945.26hypothetical protein L915_14525, partial [Phytopht... [more]
ETL33058.14.300e-945.26hypothetical protein L916_14432, partial [Phytopht... [more]
XP_008910700.14.300e-945.26hypothetical protein PPTG_23686 [Phytophthora para... [more]
ETP37397.14.300e-945.26hypothetical protein F442_14796, partial [Phytopht... [more]
XP_002898241.14.300e-945.26conserved hypothetical protein [Phytophthora infes... [more]
ETI39431.15.600e-948.15hypothetical protein F443_14960 [Phytophthora para... [more]
OWY98191.12.800e-846.91hypothetical protein PHMEG_00031100 [Phytophthora ... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00190.1NO28G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00190.1NO28G00190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00190 ID=NO28G00190|Name=NO28G00190|organism=Nannochloropsis oceanica|type=gene|length=2027bp
ATGTGCTTCGCTTGTTGCTACTGTGCGATTGAGgtacgactttggggggg
tgcaagaaaagagcaacgatcgcttcggagaattagactgtgtatttatc
taaaaacatcgttttggtcctcactgtactaaccaacaacacgcagcatc
acgcctgtaaatttgttggcggcaacgaggtttttaaaagcgtgaaatgt
gcacgtaaatgcggcccaagggcacggcaagcaagggcaagtagaagcag
caaaagttcagcgcataacgcccccccgacaaactagccacagatacagc
cacatattctgtccctcatgcaatccctgccttgtctctgaccctttttg
tccgtgtttgtcctccaacaaaatgcgaagccagcagcagcttgtcgcct
gacgtgcgtgcgttcgcgttgcgggtttcggacatcggcaggtccattag
gtcatccttttctatttagccccgcgcccgccagtggagggctgagagtt
gcctgtcccctttcttgccgcccttcttactatcgtctttctcttcgtgc
ggggcgcggatgtcctctcacaagtgtacgaatgtgacactgggttgact
ttgcgtgggaggcaattggtgatgcactgattggctgctgtcccggggat
gatcctcccctcccctctgtcccctcactagCCTTCTTTCTTCTGCGCCT
CCTCAAACCATCCCTCACTCTGCACCATCGCAATCACAGGGAGTAAGACT
TCGCCAACCTCTGCTGACTGTTCGCCTCTTCTTTCTCAAGAAAAGgtacg
tatgtatgatggaaaaatggagcagaagaggagcgagatgtggaggagac
ggacagagaggacgagtgagatgggataagggaggacgtcagtgtgagcg
tgggcatcatactgtaagcgtgggcatcatattgtatgtgtatcgcagac
acacacagagttaccggtgccatgtctagacgaccagccattccccttcg
tgatgcctccctgcttcagacgtctcatcctccctgcccccctctccccc
tcaacatagGCTTTGAGCATCCAGAGATCCGTCTTTCTTCCTTCTTTAGC
AACCATGCAACTCTTCATCCAATCTAATGGGTCCACTTTTACCCTCAATG
TCGCGGAGGGCGCCACGgtacgagttgtctccctccctccctccctccct
ccctctctcccttccctcctccctccctcccatgagttctctcttcctac
ctcccttcctaacgttttggaattcctcgatttctttctccctccctcct
ctccttcctcgttaatcaccagGTGCATGAGCTCAAGGCCGCCGTAGAGG
ACAAGGAGTTCATCCCCTCCTCCCTCCAGCGCCTGGTGACAGGCACCACA
ACGCTCACGGACGgtatgttggcaaataatgagggagggacgaatgggga
ttaagtgtgggtgcgcgtgtgggtgcgcgtgtgggtgtgaatgggtgtgt
gtgagagtgttggcggacatgctcactcggtggagtatccttttcttgtg
gtcaatcactttgctgcattttcagacacacaccacatgaaagctgacac
tttcctgcctccttccctttctccagGCCTTCTGTCCGAATTCGGCGTGG
AGGAGGAGTCCACCATTCAGCTCCTGATGGATATTAACgtacgtagagga
aggagcgaggcagggaatgataggaggaagagagcgacagtagctacgtt
gagatgtattttgaaacgcatgtcggataatcaccctctcttcctctcct
tccatccctcccttccggttgactttgtttatcccctctctctctcgtat
ggtatagggtggatgaactcaccatcttctttgtaccttccccatctcat
cctccctccttttctcgtttttcacatggcatggcatatatagGGTGGGA
TGCGAGCCAAGTGGCGCAAGAAGCGCATGCGTCGTCTCCGTCGCAAGCGC
CGTAAGATGCGCATGCGTGCCCGATAA
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protein sequence of NO28G00190.1

>NO28G00190.1-protein ID=NO28G00190.1-protein|Name=NO28G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MCFACCYCAIEPSFFCASSNHPSLCTIAITGSKTSPTSADCSPLLSQEKA
LSIQRSVFLPSLATMQLFIQSNGSTFTLNVAEGATVHELKAAVEDKEFIP
SSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWRKKRMRR
LRRKRRKMRMRAR*
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Synonyms
Publications