NO27G01730, NO27G01730 (gene) Nannochloropsis oceanica

Overview
NameNO27G01730
Unique NameNO27G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1499
Alignment locationchr27:583310..584808 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:583310..584808 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO27G01730 vs. NCBI_GenBank
Match: EWM22885.1 (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana])

HSP 1 Score: 94.7 bits (234), Expect = 3.300e-16
Identity = 65/173 (37.57%), Postives = 86/173 (49.71%), Query Frame = 0
Query:    6 SSVLLAGVALFSAMSAVSADGIFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDP--NFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTIP 177
            SS+L+A   L S  +A    G      K L VK GR   +T SF+I    D              G++ +P  N   W            NHT KNKT    K+A D  VT+R  +I PNTW+PK  AN T T     +   LP DGL L+++Y+IT K+R+G+GIPSG  +P
Sbjct:   25 SSLLVAVATLLSNAAAQEYTG--SVCVKSLSVKAGRQATITTSFLISELPD-------TVTEAFYGITVEPLVNSLSW-----------KNHTAKNKT---SKFAGDVDVTLRKTRISPNTWRPKTFANGTGT---GTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVP 171          
BLAST of NO27G01730 vs. NCBI_GenBank
Match: XP_005853972.1 (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >EKU22388.1 hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 94.4 bits (233), Expect = 4.400e-16
Identity = 63/171 (36.84%), Postives = 89/171 (52.05%), Query Frame = 0
Query:    6 SSVLLAGVALFSAMSAVSADGIFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTIP 177
            SS+L+A   L S  +A    G      K L VK GR   +T SF+I          P     V  G++ +P  S           S+ NHT KNKT    K+A D  VT+R  +I PNTW+PK+ AN T T     +   +P +GL L+++Y++T K+R+G+GIPSG  +P
Sbjct:    5 SSLLVAVATLLSNAAAQEYTG--SVCVKSLSVKAGRQATITTSFLISEV-------PNNVTEVLYGITVEPLVSP---------LSSKNHTAKNKT---SKFAGDVDVTLRKTRISPNTWRPKIFANGTGT---GTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGTYVP 151          
BLAST of NO27G01730 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 94.0 bits (232), Expect = 5.700e-16
Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 0
Query:   27 IFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTIPL 178
            I Q  A  L  + G+T++VT   V+   DD     P+        L TD      + D  F FQS    T  NKT K  K   D G++   +KI PNTW+PK++  I   D+GD  ++ LP DG  L ++Y+IT  +R+G+ +PSG  IPL
Sbjct:  187 IIQARAHHLFARAGKTVRVTADLVV--LDD----QPIGRKRAVRALETDDIVFACSLDPFFNFQS---LTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPL 326          
BLAST of NO27G01730 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-15
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 0
Query:   27 IFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTIPL 178
            I Q  A PL  + G+T++VT   V+   DD     P     V+A  + D  F+  + D  F FQS    T  NKT K  K   D G++   +KI PNTW+PK++  I   D+GD  ++ LP DG  L ++Y+IT  +R+G+ +PSG  IPL
Sbjct:  188 IIQARAHPLFARAGKTVRVTADLVV--LDD----QPGRERAVRALPTADIVFA-CSLDPFFNFQS---LTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPL 326          
BLAST of NO27G01730 vs. NCBI_GenBank
Match: EWM30157.1 (hypothetical protein Naga_100115g3 [Nannochloropsis gaditana])

HSP 1 Score: 75.5 bits (184), Expect = 2.100e-10
Identity = 54/172 (31.40%), Postives = 85/172 (49.42%), Query Frame = 0
Query:    1 MKLTASSVLLAGVALFSAMSAVSADGIFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDP-VQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTG--VTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGI 170
            MK    S+ LAG+ALFS+ + V A  I Q   KPL V+ G  +  T +FV+ ++      +  ATDP +  G +T             G Q  +    KN+T K     D     + IR ++I PN W+PKL    T+  +     + +P++G  L + Y++  K+RVG+G+
Sbjct:    4 MKSIGLSLFLAGMALFSSTTFVDAQVIAQAMVKPLAVRPGGRITATLNFVVSSF------ASNATDPAIAVGFAT------------LGAQELAALNNKNRTTKGKASMDPLANELVIRGSRISPNKWRPKLR---TNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGV 154          
BLAST of NO27G01730 vs. NCBI_GenBank
Match: EWM29458.1 (hypothetical protein Naga_100083g24 [Nannochloropsis gaditana])

HSP 1 Score: 73.6 bits (179), Expect = 8.000e-10
Identity = 59/181 (32.60%), Postives = 86/181 (47.51%), Query Frame = 0
Query:    1 MKLTASSVLLAGVALFSAMSAVSA------DGIFQTYAKPLVVKKGRTLKVTQSFVIQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNKTDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDGLTLNREYRITYKVRVGRGIPSGDTI 176
            MK   SS++LA   + SA+   +A      D I  +  KP+ VK G  + +T SF+       R+L  +A        +T PN +D          SN N TK +   K+ K  + T V +  ++I PNTW+PKL +NIT    G      +P  GL    +Y+I  K R+G+  PSG  I
Sbjct:    1 MKFAISSLILASAVIISAIGRATAQLFPDFDAIGHSTVKPISVKAGGRVTLTTSFLFLE-TRRRQLRELAFADEILYWAT-PNEADIPAYGDLEELSNKNKTKTSH-PKSSKHGNSTDVRLVRSRIMPNTWRPKLRSNIT----GSTNFMSIPTTGLVALEDYKIINKFRIGKRYPSGSVI 174          
The following BLAST results are available for this feature:
BLAST of NO27G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM22885.13.300e-1637.57hypothetical protein Naga_100160g3 [Nannochloropsi... [more]
XP_005853972.14.400e-1636.84hypothetical protein NGA_0434301 [Nannochloropsis ... [more]
EWM22739.15.700e-1637.09hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
EWM22729.11.300e-1538.41hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
EWM30157.12.100e-1031.40hypothetical protein Naga_100115g3 [Nannochloropsi... [more]
EWM29458.18.000e-1032.60hypothetical protein Naga_100083g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01730.1NO27G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608283gene_9909Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01730.1NO27G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01730 ID=NO27G01730|Name=NO27G01730|organism=Nannochloropsis oceanica|type=gene|length=1499bp
ACAGCACCCACCCTCTCTTTCAAGAAACATGAAGTTGACTGCCTCCTCCG
TCCTCCTGGCCGGCGTCGCCCTCTTTTCCGCCATGgtaagttccgactcg
accatgtatacatgcgcgaatacgagcgatatcccaaaaatcgataccgt
gctcacgttctctaatgccatcgtcctcctccatttcatgctcaatcctt
cctcccttgtcttacagTCCGCTGTCAGCGCCGACGGCATTTTCCAAACC
TATGCCAAGCCCCTGGTGGTGAAGAAGGGCAGAACCTTGAAAGTTACCCA
GAGCTTCGTGATCCAGAACTATGACGACCTCCGCCGTCTAAGTCCTGTTG
CTACGGACCCTGTTCAGGCTGGGgtacgttgaaagaagagggcagcggag
gaggagagacggagggaggagagaacttgtcctagcagagtcgctacctg
cctgttgacatgcttgctaatgtatgacccgacacaagtctctttctcgt
cgcctgagctagtatttacatttctcataccttccttcgtttccttcctt
tccctcccactttctgtttccatccacctaccacacttacagCTTTCGAC
CGACCCGAATTTTTCTGATTGGAACTTCGATAGCGTCTTCGGATTCCAGT
CCAATAGTAACCATACGAAGAAAAACAAGACAGACAAGGCGGACAAGTGG
GCAGATGATACCGGGGTCACCATCAGATCGGCCAAGATCTTCCCCAATAC
GTGGAAGCCTAAgtgagtaagacaggagggaagggagggagaggggggga
agggagaaggagagagggtgtgggagtacgtgtaaattgaaatcttttct
cgtttagccctacttcgaatctttatgcctcctcccctctctttctctcc
tctattcgactcgtccccaacagGCTGTCTGCGAACATTACCTCGACCGA
CGATGGTGACGTCGCCATTTTCGAGCTCCCGCAGGACGGCCTGACACTGA
ACAGGGAGTACAGGATCACCTACAAGGTGCGCGTCGGGAGGGGCATTCCC
TCTGGTGACACCATTCCACTTCCTTTTGCCTTCAACGGCCCCAACGTTGA
TGGAGACGCGGATCTCGAGGTGCTTGTCAGGTAAACAAACGCCTTGGCCT
GGCCCCGCTCTCTAGTGGGAAGTACAGGGTTGAGATGCATCATGTCGCAG
CCGTGTCGAGTTTTCGAAGTGGTGGGCTGTCTGGCGTATGCATGTATGGG
CGTTTGTGTTTGTTTGTTTGTTTGTATTCATCCATGATGTGCACGGCCTA
GTCCCTGATCCCCTTCAGATGATCTGCCTTTTCTGTGTTGTGTCAATGTC
TGCATATGTGTCATTGTGTGTGTCTTATTGTGTGTGTAGGTGTAGTGGCC
TCCTCTTTCAAAGAGACGAGACGATAAAAAAAAGAAAGAAAACCTGAGTG
TCATCTCTTAACAAACCATCGTTCCGTTAAACGGAGTTATAATCTCTTT
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protein sequence of NO27G01730.1

>NO27G01730.1-protein ID=NO27G01730.1-protein|Name=NO27G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MKLTASSVLLAGVALFSAMSAVSADGIFQTYAKPLVVKKGRTLKVTQSFV
IQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNK
TDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDG
LTLNREYRITYKVRVGRGIPSGDTIPLPFAFNGPNVDGDADLEVLVR*
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Synonyms
Publications