NO27G01660, NO27G01660 (gene) Nannochloropsis oceanica

Overview
NameNO27G01660
Unique NameNO27G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1102
Alignment locationchr27:552799..553900 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:552799..553900 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO27G01660 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 95.1 bits (235), Expect = 2.500e-16
Identity = 61/153 (39.87%), Postives = 83/153 (54.25%), Query Frame = 0
Query:   27 IVQTYAKPLVMKKGRIVTVTQSFVV-ENFNGRRLSTQDPP---IQAGLSTDPMFTEWNFDSDFGLLSNANKTKHNKTSKADKHANDLGITIKSAKIFPNTWRPKESANITSTDDGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLAL 176
            I+Q  A PL  + G+ V VT   VV ++  GR  + +  P   I    S DP F   NF S          T  NKTSK  K   D+GI+   +KI PNTWRPK +  I   D+GD  ++ LP DG  L ++YKIT  +R+G+ +PSGT++ L
Sbjct:  188 IIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVFACSLDPFF---NFQS---------LTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPL 326          
BLAST of NO27G01660 vs. NCBI_GenBank
Match: EWM22885.1 (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-15
Identity = 65/168 (38.69%), Postives = 88/168 (52.38%), Query Frame = 0
Query:    6 SSALLAGVALFSTLSAVSADGIVQTYAKPLVMKKGRIVTVTQSFVVENFNGRRLSTQDPPIQA--GLSTDPMFTEWNFDSDFGLLSNANKTKHNKTSKADKHANDLGITIKSAKIFPNTWRPKESANITSTDDGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGT 172
            SS L+A   L S  +A    G V    K L +K GR  T+T SF++           D   +A  G++ +P+            LS  N T  NKTS   K A D+ +T++  +I PNTWRPK  AN T T     +   LP DGL L+++YKIT K+R+G+GIPSGT
Sbjct:   25 SSLLVAVATLLSNAAAQEYTGSV--CVKSLSVKAGRQATITTSFLISEL-------PDTVTEAFYGITVEPLVNS---------LSWKNHTAKNKTS---KFAGDVDVTLRKTRISPNTWRPKTFANGTGT---GTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGT 168          
BLAST of NO27G01660 vs. NCBI_GenBank
Match: XP_005853972.1 (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >EKU22388.1 hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 91.3 bits (225), Expect = 3.600e-15
Identity = 60/166 (36.14%), Postives = 89/166 (53.61%), Query Frame = 0
Query:    6 SSALLAGVALFSTLSAVSADGIVQTYAKPLVMKKGRIVTVTQSFVVENFNGRRLSTQDPPIQAGLSTDPMFTEWNFDSDFGLLSNANKTKHNKTSKADKHANDLGITIKSAKIFPNTWRPKESANITSTDDGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGT 172
            SS L+A   L S  +A    G V    K L +K GR  T+T SF++       +      +  G++ +P+ +          LS+ N T  NKTS   K A D+ +T++  +I PNTWRPK  AN T T     +   +P +GL L+++YK+T K+R+G+GIPSGT
Sbjct:    5 SSLLVAVATLLSNAAAQEYTGSV--CVKSLSVKAGRQATITTSFLIS-----EVPNNVTEVLYGITVEPLVSP---------LSSKNHTAKNKTS---KFAGDVDVTLRKTRISPNTWRPKIFANGTGT---GTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGT 148          
BLAST of NO27G01660 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 3.600e-15
Identity = 58/151 (38.41%), Postives = 81/151 (53.64%), Query Frame = 0
Query:   27 IVQTYAKPLVMKKGRIVTVTQSFVV--ENFNGRRLSTQDPPIQAGLSTDPMFTEWNFDSDFGLLSNANKTKHNKTSKADKHANDLGITIKSAKIFPNTWRPKESANITSTDDGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLAL 176
            I+Q  A  L  + G+ V VT   VV  +   GR+ + +       L TD +    + D  F   S    T  NKTSK  K   D+GI+   +KI PNTWRPK +  I   D+GD  ++ LP DG  L ++YKIT  +R+G+ +PSGTV+ L
Sbjct:  187 IIQARAHHLFARAGKTVRVTADLVVLDDQPIGRKRAVR------ALETDDIVFACSLDPFFNFQS---LTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPL 326          
BLAST of NO27G01660 vs. NCBI_GenBank
Match: EWM30157.1 (hypothetical protein Naga_100115g3 [Nannochloropsis gaditana])

HSP 1 Score: 90.1 bits (222), Expect = 8.100e-15
Identity = 64/195 (32.82%), Postives = 97/195 (49.74%), Query Frame = 0
Query:    1 MKLTVSSALLAGVALFSTLSAVSADGIVQTYAKPLVMKKGRIVTVTQSFVVENFNGRRLSTQDPPIQAGLSTDPMFTEWNFDSDFGLLSNANKTKHNKTSKADKHANDLGITIKSAKIFPNTWRPKESANITSTDDGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLALPFNFNGPSMGFPDFLEVLVR 196
            MK    S  LAG+ALFS+ + V A  I Q   KPL ++ G  +T T +FVV +F     +  DP I  G +T           +   L+N N+T   K S  D  AN+L   I+ ++I PN WRPK     T+  +     + +P++G  L + YK+  K+RVG+G+   TV  +       S  F + L+V ++
Sbjct:    4 MKSIGLSLFLAGMALFSSTTFVDAQVIAQAMVKPLAVRPGGRITATLNFVVSSFAS---NATDPAIAVGFATLGA-------QELAALNNKNRTTKGKAS-MDPLANEL--VIRGSRISPNKWRPKLR---TNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTLIAGSYIFEESLDVYIK 182          
BLAST of NO27G01660 vs. NCBI_GenBank
Match: EWM29458.1 (hypothetical protein Naga_100083g24 [Nannochloropsis gaditana])

HSP 1 Score: 89.0 bits (219), Expect = 1.800e-14
Identity = 67/204 (32.84%), Postives = 94/204 (46.08%), Query Frame = 0
Query:    1 MKLTVSSALLAGVALFSTLSAVSA------DGIVQTYAKPLVMKKGRIVTVTQSFVVENFNGRRLSTQDPPIQAGLSTDPMFTEWNFDSDFGLLSNANKTKHNKTSKADKHANDLGITIKSAKIFPNTWRPKESANITSTDDGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLALPFNFNGPSMGF---PDFLEVLVR 196
            MK  +SS +LA   + S +   +A      D I  +  KP+ +K G  VT+T SF+      R+L       +      P   +     D   LSN NKTK     K+ KH N   + +  ++I PNTWRPK  +NIT    G      +P  GL    +YKI  K R+G+  PSG+V+   F       GF    +FL+V VR
Sbjct:    1 MKFAISSLILASAVIISAIGRATAQLFPDFDAIGHSTVKPISVKAGGRVTLTTSFLFLETRRRQLRELAFADEILYWATPNEADIPAYGDLEELSNKNKTK-TSHPKSSKHGNSTDVRLVRSRIMPNTWRPKLRSNIT----GSTNFMSIPTTGLVALEDYKIINKFRIGKRYPSGSVIT--FYVYAEYGGFNLLQEFLDVYVR 197          
BLAST of NO27G01660 vs. NCBI_GenBank
Match: XP_005854180.1 (hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526] >XP_005855596.1 hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >EKU20759.1 hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >EKU22181.1 hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.6 bits (161), Expect = 9.600e-8
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0
Query:  101 KADKHANDLGITIKSAKIFPNTWRPKESANITSTDDGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLA 175
            K+ KH N   + +  ++I PNTWRPK  +NIT    G      +P  GL + ++YKI  K R+G+  PSGTV++
Sbjct:   41 KSSKHGNSTDVRLVRSRIIPNTWRPKLRSNIT----GSTNFMSVPTTGLVVLKDYKIINKFRIGKRYPSGTVIS 110          
The following BLAST results are available for this feature:
BLAST of NO27G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM22729.12.500e-1639.87hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
EWM22885.11.300e-1538.69hypothetical protein Naga_100160g3 [Nannochloropsi... [more]
XP_005853972.13.600e-1536.14hypothetical protein NGA_0434301 [Nannochloropsis ... [more]
EWM22739.13.600e-1538.41hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
EWM30157.18.100e-1532.82hypothetical protein Naga_100115g3 [Nannochloropsi... [more]
EWM29458.11.800e-1432.84hypothetical protein Naga_100083g24 [Nannochlorops... [more]
XP_005854180.19.600e-840.54hypothetical protein NGA_0188501 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01660.1NO27G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608305gene_9915Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01660.1NO27G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01660 ID=NO27G01660|Name=NO27G01660|organism=Nannochloropsis oceanica|type=gene|length=1102bp
ATGAAGTTGACTGTTTCCTCCGCCCTCCTGGCCGGCGTCGCCCTCTTCTC
CACCCTGgtaagttctgacactccctcataagcatgcaagtacctgtccc
ataaatcgattttacgctcaggtttatttaattgcttcccctcctcctcc
ctttcttgatctatccttcctcccttattttacagTCCGCTGTCAGCGCC
GACGGCATTGTCCAAACCTACGCCAAGCCCCTGGTGATGAAGAAGGGCAG
GATCGTGACGGTCACCCAGAGCTTTGTGGTCGAGAACTTTAACGGCCGCC
GTCTTTCTACTCAGGACCCTCCTATCCAGGCTGGGgtacgttgaatgaag
aaggcagaggagggagaggaagggagggaggacttcccccaacagattcg
gtgccgggccgtttggcatgctcacagacgactcgacgcgtttttctttc
tcgtcgcctgaagacgtataggtgatacttactccttcctttctttcctt
ccttcctttccctcccaacactccctgtctctatccaccgacctctccac
agCTCTCGACTGACCCGATGTTTACTGAGTGGAACTTCGACAGCGACTTT
GGACTCCTCTCCAATGCTAACAAAACAAAACATAACAAGACGAGCAAGGC
GGACAAGCACGCAAATGACCTCGGGATCACCATCAAGTCGGCCAAGATCT
TCCCCAATACGTGGAGGCCTAAgtgagtgagacaggcgggcaggaggaga
gggaagaagggggggaaaagggagaaggagggaggaaataggaggtatat
gagattacaatctctcctcgtccagctctaattcgattcctaatgcctcc
tcccctttctttctctcctctatctgactcgtcccccgcagAGAGTCTGC
GAACATTACCTCGACCGACGATGGTGATGTCGCCATCTTCGAGCTCCCGC
AGGACGGCCTGACACTGAACAGGGAGTACAAGATCACCTACAAGGTGCGC
GTCGGGAGGGGCATTCCCTCTGGTACCGTCCTCGCGCTTCCGTTTAACTT
CAACGGCCCCAGCATGGGTTTCCCGGATTTCTTGGAGGTGCTTGTCAGGT
AA
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protein sequence of NO27G01660.1

>NO27G01660.1-protein ID=NO27G01660.1-protein|Name=NO27G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MKLTVSSALLAGVALFSTLSAVSADGIVQTYAKPLVMKKGRIVTVTQSFV
VENFNGRRLSTQDPPIQAGLSTDPMFTEWNFDSDFGLLSNANKTKHNKTS
KADKHANDLGITIKSAKIFPNTWRPKESANITSTDDGDVAIFELPQDGLT
LNREYKITYKVRVGRGIPSGTVLALPFNFNGPSMGFPDFLEVLVR*
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Synonyms
Publications