NO27G00680, NO27G00680 (gene) Nannochloropsis oceanica

Overview
NameNO27G00680
Unique NameNO27G00680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length973
Alignment locationchr27:256499..257471 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:256499..257471 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR008417BAP29/BAP31
Homology
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BLAST of NO27G00680 vs. NCBI_GenBank
Match: EWM21023.1 (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 296.6 bits (758), Expect = 8.100e-77
Identity = 181/235 (77.02%), Postives = 197/235 (83.83%), Query Frame = 0 
Query:   42 MSTPEMELQNASLQAAGRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILAALNRISFLRFDYGGASISLIAIIILFALLGLLFSANDSLNARASENQALFFAEKKELRCKRWRAERNFWLSVLGCVLWLVLLRIQTLLMDVGPLEERLKGVEEERDSLVQEKKEKEGVLERLRAAVEEGGXXXXXXXXXXXXXXXXXXXMDTLKKKLATVEAENEDLKRGAKKTS 277
            M+  E E  NA +Q+ GRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGIL ALNRISFLRFDYGGASISLIAIIIL ALLGL+FSANDSLNAR +ENQA FFAEKKELRCKRWRAERNFWLSVLGCVLW+VLLRIQTLLMDVGPLEERLK  EEERD+  +E KEKE              XXXXXXXXXXXXXXXXX  ++ LKK++  +E E E L++G+KKTS
Sbjct:   27 MAIYEGEQPNAYMQSTGRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILNALNRISFLRFDYGGASISLIAIIILIALLGLIFSANDSLNARRAENQAHFFAEKKELRCKRWRAERNFWLSVLGCVLWVVLLRIQTLLMDVGPLEERLKRAEEERDAAAKESKEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVEGLKKRVVILEEEKEALRKGSKKTS 261
The following BLAST results are available for this feature:
BLAST of NO27G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21023.18.100e-7777.02expressed unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL058nonsL058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005073NSK005073Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00680.1NO27G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100271g4gene9401Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00680.1NO27G00680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00680 ID=NO27G00680|Name=NO27G00680|organism=Nannochloropsis oceanica|type=gene|length=973bp
ATGAAGCATTGTAGTACTTTTCACCAGAAGGAGCGACCAATTCCGACAAC
CTCTTTTCCAACCTCCACAATCACAGACATTATTCAGGCAGCAGGAGCGC
TGTTCCAAGCGCCTGATTCAGCGATGTCCACCCCCGAAATGGAGCTACAA
AACGCCTCGCTTCAAGCGGCGGGCCGCTCCGGGTCAAATCCCTGGCAGCT
TTTCCTCTATTTCATCTTTCCCATTCCTCTGGTCTTTCTAGTCCTCATCT
CGTTGCCCTTTCCGGCGCGGTATCGGGCCAAGATTCGCGTGGGTATTTTG
gtacgtcttatgggtccttatgattgtctgtaggtgtaaaaatatgtgtg
tatgatgaaaggaggaggctcgacgtcaggcatcaacatgcatggctcaa
ctggcctccctccgctccctccttcttctccttccttcctagGCGGCCTT
GAACAGGATTTCTTTCCTTCGCTTCGACTACGGTGGGGCCAGCATTTCGC
TCATCGCCATCATCATCCTTTTTGCCTTGCTGGGCCTTTTATTTTCAGCC
AATGACTCTCTGAATGCCCGTGCCAGTGAAAACCAAGCATTATTCTTCGC
AGAAAAGAAAGAATTGCGCTGTAAGCGTTGGCGGGCGGAGCGAAATTTCT
GGTTGTCCGTTTTGGGCTGTGTCTTGTGGTTGGTCTTGTTGAGAATTCAG
ACTTTGCTCATGGACGTCGGGCCGTTGGAAGAGAGGCTGAAGGGCGTGGA
GGAGGAGAGGGACAGCTTGGTGCAGGAAAAGAAAGAGAAGGAAGGGGTGC
TCGAGCGCTTGCGGGCGGCAGTGGAGGAGGGAGGGAGGGAAGGCAAGGAG
AAGGAAGGGGTGATTTTGGCGTTGAAAGCAAAGGTCGGGGAGATGGACAC
GTTGAAGAAGAAATTGGCTACAGTGGAGGCTGAGAACGAAGATCTGAAGA
GGGGGGCAAAGAAGACTAGCTGA
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protein sequence of NO27G00680.1

>NO27G00680.1-protein ID=NO27G00680.1-protein|Name=NO27G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MKHCSTFHQKERPIPTTSFPTSTITDIIQAAGALFQAPDSAMSTPEMELQ
NASLQAAGRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGIL
AALNRISFLRFDYGGASISLIAIIILFALLGLLFSANDSLNARASENQAL
FFAEKKELRCKRWRAERNFWLSVLGCVLWLVLLRIQTLLMDVGPLEERLK
GVEEERDSLVQEKKEKEGVLERLRAAVEEGGREGKEKEGVILALKAKVGE
MDTLKKKLATVEAENEDLKRGAKKTS*
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Synonyms
Publications