NO24G00320, NO24G00320 (gene) Nannochloropsis oceanica

Overview
NameNO24G00320
Unique NameNO24G00320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4693
Alignment locationchr24:109109..113801 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:109109..113801 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G00320 vs. NCBI_GenBank
Match: XP_005854455.1 (hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526] >XP_005854696.1 hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >EKU21661.1 hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >EKU21901.1 hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.9 bits (167), Expect = 6.100e-8
Identity = 71/238 (29.83%), Postives = 103/238 (43.28%), Query Frame = 0 
Query:  109 RQGWAMAMGELLSQGCLEDTK---ANGFIRMMEGFARGQRPNCQINDPSAGVVPSLVTLLST--ARIQDDKGSSSQGEVNKMSPKAFLIH--------DAESLYQRLTKDEGACFLVEE-SFHGNRTVECNARMAELFISTRELQGLVDQTGLAVGHLMMRLVHCPDHRLILVRELATMALKRFGKASIDMPLTC-------ESRHGALLRCLASIGVTI-------------YPCGR 313
            R G + A+  L +QG L+  K   A   IR     ARG      + D +AGV+P L  LL T        +  +  G V +  P A                L Q+L  DE AC++V   +  G  +V CN RM+ELFIS+ EL+GL  QT +A+     R +  P     L+   + + ++     S+D+ L C        S   A  +CLA++G+ I              PCGR
Sbjct:  303 RNGVSGAIARLAAQGMLDWEKVFNARALIRACSQ-ARG------VADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPG-LYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGR 532
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BLAST of NO24G00320 vs. NCBI_GenBank
Match: EWM27402.1 (hypothetical protein Naga_100212g6 [Nannochloropsis gaditana])

HSP 1 Score: 68.9 bits (167), Expect = 6.100e-8
Identity = 71/238 (29.83%), Postives = 103/238 (43.28%), Query Frame = 0 
Query:  109 RQGWAMAMGELLSQGCLEDTK---ANGFIRMMEGFARGQRPNCQINDPSAGVVPSLVTLLST--ARIQDDKGSSSQGEVNKMSPKAFLIH--------DAESLYQRLTKDEGACFLVEE-SFHGNRTVECNARMAELFISTRELQGLVDQTGLAVGHLMMRLVHCPDHRLILVRELATMALKRFGKASIDMPLTC-------ESRHGALLRCLASIGVTI-------------YPCGR 313
            R G + A+  L +QG L+  K   A   IR     ARG      + D +AGV+P L  LL T        +  +  G V +  P A                L Q+L  DE AC++V   +  G  +V CN RM+ELFIS+ EL+GL  QT +A+     R +  P     L+   + + ++     S+D+ L C        S   A  +CLA++G+ I              PCGR
Sbjct:  303 RNGVSGAIARLAAQGMLDWEKVFNARALIRACSQ-ARG------VADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPG-LYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGR 532
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BLAST of NO24G00320 vs. NCBI_GenBank
Match: EWM20727.1 (hypothetical protein Naga_102498g1 [Nannochloropsis gaditana])

HSP 1 Score: 68.2 bits (165), Expect = 1.000e-7
Identity = 44/99 (44.44%), Postives = 52/99 (52.53%), Query Frame = 0 
Query:  195 AESLYQRLTKDEGACFLVEE-SFHGNRTVECNARMAELFISTRELQGLVDQTGLAVGHLMMRLVHCPDHRLILVRELATMALKRFGKASIDMPLTCESR 293
            A +L  RLTKDE AC+LV    F  +  VECN RMA LF+   E+QGLV QTGL       R V C +  L L   L T+ L    K  ID+ L    R
Sbjct:   24 ATALAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRFV-CNESLLSLYAALVTLMLGYGSKTQIDVVLKVGGR 121
The following BLAST results are available for this feature:
BLAST of NO24G00320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854455.16.100e-829.83hypothetical protein NGA_0244301 [Nannochloropsis ... [more]
EWM27402.16.100e-829.83hypothetical protein Naga_100212g6 [Nannochloropsi... [more]
EWM20727.11.000e-744.44hypothetical protein Naga_102498g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00320.2NO24G00320.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G00320.1NO24G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597996gene_7257Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00320.2NO24G00320.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G00320.1NO24G00320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00320 ID=NO24G00320|Name=NO24G00320|organism=Nannochloropsis oceanica|type=gene|length=4693bp
ATGTTTCTCCGTCCTACATCTTCTTGCGCACATTCACCCAACACTACCAG
CAGCGGCAGAAACGGCAGCAGCGGCAGCAGCGGCAGCAGCAGCAGCCGCA
GCAGCAGCAGCAGTAGCAGCAGTAGCAACAGTAGCACGATTCTTGCGCTC
CGACGGCCCATCCTTCTTTCTCTTCCTCCCTCCCTCTCTTCCAGCCACCA
CAAGACGGAAGCGGAGAGAGAGGAAGGGGGAGGGAGGGAGGGAGGACAGA
AATTGCAGCGTGTGGGCGCACCGTCGGTGATAATGGGGTGGCTCTTATCG
AGTGACAGGgtaagctagagaagagattaagagagggaagagagtgggga
aagggggagggaaggagagacgaaggaaggaagggaagaagaacgcttga
tttgaatttcttttcataaacaaactcaactgtccctccctcccttcatc
cggccctccttctctccctcccctcagGTCCTCAGGACAGTCCGACAGGG
CTGGGCCATGGCGATGGGCGAGCTGCTCAGCCAGGGCTGCTTGGAGGACA
CTAAAGCCAATGGATTCATgtacggagggagggcaggatgttggaagcat
acgatcgggcctttagattgtagttgctacgagcacttagtccctgtctc
tctctcattccctttctcctttccctccctccctcccttccttccttccc
ttcttcctgcctagTCGGATGATGGAGGGGTTCGCACGTGGCCAGCGGCC
CAACTGCCAAATTAATGATCCCTCTGCCGGCGTCGTCCCTTCGCTTGTGA
CGCTCCTTTCGACTGCCCGCATCCAGGATGgtaagggagggagggaggga
gggagggagggagagcaggggaggctcccgctgccccagtattgttcgtg
tcacttcaagaagaaggagggcgggaggaaggtcgaaagggggggaaggg
atatgagctcctggttgtctttattatttgccttatactaacacctgggc
ctacctctatatgtaaagACAAAGGGAGCAGCAGCCAGGGGGAGGTTAAT
AAAATGAGCCCCAAAGCCTTTCTCATCCATGACGCCGAGTCGCTGTATCA
ACGGCTGACCAAGGACGAAGgtgggccttccctccctccctccctccctc
cctcctcctccctctatctctactcccttccttcctttggttctcttctt
tccttttgaccctccctccctccctccctccctccctccctcctccctcc
ctcctcctccctccctccctccccagGCGCCTGCTTCCTGGTGGAAGAGA
GCTTCCACGGCAATCGAACTGTCGAgtaaggagaagaaggagggagggag
ggagggagggagggagggaagagggaagataggtgcatgtagatcgacga
gaggaaagagagaagtctaaaatccaacaccccaaaaaaaacaccctctc
tccctccctccctccctccctagGTGCAATGCCCGGATGGCCGAGCTCTT
CATTTCCACGCGCGAGCTCCAAGGTCTCGTGGACCAAACGGGCCTCGCTG
TCGGACACCTCATGATGCGgtgcgtccctccctccctccctccctccctc
cctccctccttcccttcctaccttgttggtaacactttggcagtaagaag
gctcttcccctcatcctccttccctcccattccccttccttcgtttccca
tgggcaaattctctcactcgcattcctcattacacctccctccctccctc
cctcctccctccctagCCTCGTTCATTGCCCCGACCACCGGCTGATACTC
GTCCGCGAGCTGGCCACTATGGCACTTAAGCGCTTCGGAAAAGCCTCCAT
TGATATGCCTCTCACGgtgagccctccctctatcccttcttcccgttcac
catggccgcgtccattctcatcctgctccctctccctccctttccctccc
tccttgcctccctcccttcaccctctagTGCGAATCTCGCCACGGCGCCC
TCCTTCGCTGCCTGGCCTCCATCGGAGTCACCATATATCCTTGCGGGAGG
CATGTATTAATCTTTCgtatcttccccttggcacgcgcgacctcgccctt
cccttcaccgccgccctcccttcctccaccttgagggagggaaggaggga
gcaagccaccgtggcaacgacgacggaagggaggaagggagagagagagg
gaaggagggaagagggtgtgggctcagcccctcctcttcaatcaccgacg
atcatccgcccctcctccctcccccacctccctccaccccgagtccctct
ctccctccctccctccctcccttctcggagGCCACCTGACCGACGCAAGT
ACTCGCACGAGCAGTGAGGAGTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCAGGCACTGCTACGACCCCTCCCT
CCCTTCTTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCTCTTTGTCA
TCCACCCGACTGGTGCCACGGCCTCTGgtaagcaaggagggagggagaga
gggagggagggagggaggttaaggagggagagaaaggcatgataaattgc
atagatccgtataccacacatgctgaccacgcgccctccctccctccttc
cctccctccttcctcccctccctccttccttcctccagCGTTTCACGTCA
GAAGGTCGTCCTGTCCTCCTTTCCCTCTCTCCCCGTTTCACTTCAATGCA
GCAGCTTGGGCATGGGCGAGGAAGGGGGGGAGGAAGTAGCAGGAAGGGGA
AGAAAAAGAAGGAAGAGAAGCAACGGTCACAGCGACAGCAACAGCAACAA
CAACAGCAGCAGCAGCCGCCTCAAGAGCAGCAGCAACAAGAACAGAATTC
AGGAGAAGCTTCCTCCTTCTTCCAGCCTACATCGAGAGAGAAGGAAGGAG
GGAGGGAGGGAGAGAGGGAGGGAGGGCGGGCCTGGGGTCCATCAAGGGCT
GCAGCGAGAGAAGCAGCATCAGACACTAAGAAAGCGTCAAAGAGAAGgta
ggcatccctccttttttccctccctccttctttccctccctccttctttc
cctccctccttctttccctccctccttctttccctccctccttttttccc
tccctccttctttccctccctccttctttccctccctccttctttccctc
cctccttttttccctccctccttctttccctccctccttctttccctccc
tctttctttccctcccgccttctttccctccctccttctttccctccctc
cttctttccctcccgccttctttccctccctccttctttccctccctcct
tctttccctccctctttctttccctcccgccttctttccctccctccttc
tttccctccctccttctttccctccctccttttttccctccctccttctt
tccctccctccttctttccctccctccttctttccctccctccttttttc
cctccctccttctttccctccctccttttttccctccctccttctttccc
tccctccttcgttccctcccgccttctttccctccctccttctttccctc
cctccttctttccctccctccttctttccctcccgccttctttccctccc
tccttctttccctccctccttctttccctccctccttctttccctcccgc
cttctttccctccctccttctttccctcccttcctccctcctgggcttcg
gcttaccgttcagtagatctgtatcttgatatccgcttctcacctccctc
attccctcattccctcttcttcttacgtgaagCCTTTCAGGCTCATCTGT
TTTCACTGCAAGCTCCCTACCCCATCCGTGCCCCGCTTTCTCCTCCTCTT
CTTCCTCCTCCTCCTCCTTCACACGTCCTCCACCTTCCATCTTTCCTCTC
CCAACGGGCCCAATTACTGACGTGTCCAATAGGCAGAATTGTAACAGCTC
CAGCGACAGCAGCACCAGCAGTAACAGCACCAGCAGTAACAGCACAAGCA
GAGTCATCATCCACAGGGCTGGCACGGAGAACCCCACTTGCCCGAGGAGG
AGGAAGGGCAAAGATGGCTGCACCAGCAGCTGCAGCAGCGGCACTGCCGG
ACAAGGAGGGATGAAGGAAGGGAACGTGGGATCTATCTCCTCCTTTCTCT
CTGATGCCATCGCGCTGCTTCCTTCCTCCTCAACCCCGTCCTCCTCCTCT
TCCTCGCCGGAAGTAGGGGCGACCCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCCAAGTGACCAGTAAGGAGGCTGACGTGGTGGCCGCTCTACT
GGGAATGAATCGGGCTCTGTAAATAATAGCTGGAAGACGGGGTAAAAAGG
AAGGCAGGTGGTAGAAATGTGAAGGAGGATGGAAAGGGAATTAAAGATAG
GAAGTTGAACCAGTAGAGGAGGGAAAAGTAGAAGAAATGAAAGAATGCAA
GTGACTCATCTCCTGAGGAAGATAATGAGGGTGAGGGACGGGTCCTCAGG
AGGAGGGAATGGTAGCCAGATAGAGAGAGACGGCGAGAGACGACGCTCCC
ACCGTGACGTAGTGAGGGAGAGAGGAACAGCAACAGCAAGAGAGAGCAAG
CAAATGTACAAATACACCCTCCTGATAATTATCTTCGTGGCAG
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protein sequence of NO24G00320.2

>NO24G00320.2-protein ID=NO24G00320.2-protein|Name=NO24G00320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp
MFLRPTSSCAHSPNTTSSGRNGSSGSSGSSSSRSSSSSSSSSNSSTILAL
RRPILLSLPPSLSSSHHKTEAEREEGGGREGGQKLQRVGAPSVIMGWLLS
SDRVLRTVRQGWAMAMGELLSQGCLEDTKANGFIRMMEGFARGQRPNCQI
NDPSAGVVPSLVTLLSTARIQDDKGSSSQGEVNKMSPKAFLIHDAESLYQ
RLTKDEGACFLVEESFHGNRTVECNARMAELFISTRELQGLVDQTGLAVG
HLMMRLVHCPDHRLILVRELATMALKRFGKASIDMPLTCESRHGALLRCL
ASIGVTIYPCGRHVLIFRHLTDASTRTSSEESSSSSSSSSSSSSSSSSSS
GTATTPPSLLPSLPLSLPPSLSLSSTRLVPRPLRFTSEGRPVLLSLSPRF
TSMQQLGHGRGRGGGSSRKGKKKKEEKQRSQRQQQQQQQQQQPPQEQQQQ
EQNSGEASSFFQPTSREKEGGREGEREGGRAWGPSRAAAREAASDTKKAS
KRRQNCNSSSDSSTSSNSTSSNSTSRVIIHRAGTENPTCPRRRKGKDGCT
SSCSSGTAGQGGMKEGNVGSISSFLSDAIALLPSSSTPSSSSSSPEVGAT
PSLPPSLPPSLPK*
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protein sequence of NO24G00320.1

>NO24G00320.1-protein ID=NO24G00320.1-protein|Name=NO24G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=664bp
MFLRPTSSCAHSPNTTSSGRNGSSGSSGSSSSRSSSSSSSSSNSSTILAL
RRPILLSLPPSLSSSHHKTEAEREEGGGREGGQKLQRVGAPSVIMGWLLS
SDRVLRTVRQGWAMAMGELLSQGCLEDTKANGFIRMMEGFARGQRPNCQI
NDPSAGVVPSLVTLLSTARIQDDKGSSSQGEVNKMSPKAFLIHDAESLYQ
RLTKDEGACFLVEESFHGNRTVECNARMAELFISTRELQGLVDQTGLAVG
HLMMRLVHCPDHRLILVRELATMALKRFGKASIDMPLTCESRHGALLRCL
ASIGVTIYPCGRHVLIFRHLTDASTRTSSEESSSSSSSSSSSSSSSSSSS
GTATTPPSLLPSLPLSLPPSLSLSSTRLVPRPLRFTSEGRPVLLSLSPRF
TSMQQLGHGRGRGGGSSRKGKKKKEEKQRSQRQQQQQQQQQQPPQEQQQQ
EQNSGEASSFFQPTSREKEGGREGEREGGRAWGPSRAAAREAASDTKKAS
KRSLSGSSVFTASSLPHPCPAFSSSSSSSSSFTRPPPSIFPLPTGPITDV
SNRQNCNSSSDSSTSSNSTSSNSTSRVIIHRAGTENPTCPRRRKGKDGCT
SSCSSGTAGQGGMKEGNVGSISSFLSDAIALLPSSSTPSSSSSSPEVGAT
PSLPPSLPPSLPK*
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Synonyms
Publications