NO23G01030, NO23G01030 (gene) Nannochloropsis oceanica

Overview
NameNO23G01030
Unique NameNO23G01030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3448
Alignment locationchr23:384425..387872 -

Link to JBrowse

Properties
Property NameValue
Description3-isopropylmalate dehydrogenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:384425..387872 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:00038623-isopropylmalate dehydrogenase activity
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0009098leucine biosynthetic process
GO:0055114oxidation-reduction process
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR004429Isopropylmalate_DH
IPR024084IsoPropMal-DH-like_dom
Homology
[Close]
BLAST of NO23G01030 vs. NCBI_GenBank
Match: EWM22938.1 (3-isopropylmalate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 580.5 bits (1495), Expect = 4.300e-162
Identity = 293/330 (88.79%), Postives = 309/330 (93.64%), Query Frame = 0 
Query:   56 GAKSEYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEALIGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGLLKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDKANVLDVSQLWREVVTEEG-QQHPSVELSHMYVDNAAMQLIRWPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLSQPAAADALEAAVEK 385
            GAK EY++TLLPGDGIGPEIMTATVGVL+ VA K  FK +FQ+ALIGGAALDA DDPFPD SLQACQS+DSVLLACIGGYKWDKNPR+KRPETGLLKMRKT+GLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGI    +GEREGFNNM+YKESEIRRIA+VAYGVAEKR KKLCSVDKANVLDVSQLWREVVTEEG + HP V L HMYVDNAAMQLIR PKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLG+P GPGVFEPCHGSAPDIAG+DKANPLAMILSAAMMLRYDLSQP AA+ALEAAVE+
Sbjct:   62 GAKGEYAVTLLPGDGIGPEIMTATVGVLEVVAAKASFKFKFQDALIGGAALDAMDDPFPDTSLQACQSSDSVLLACIGGYKWDKNPREKRPETGLLKMRKTLGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIRTGSDGEREGFNNMIYKESEIRRIAQVAYGVAEKRGKKLCSVDKANVLDVSQLWREVVTEEGLRHHPDVALEHMYVDNAAMQLIRNPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGDPRGPGVFEPCHGSAPDIAGEDKANPLAMILSAAMMLRYDLSQPQAAEALEAAVER 391
[Close]
BLAST of NO23G01030 vs. NCBI_GenBank
Match: GAX11963.1 (3-isopropylmalate dehydrogenase [Fistulifera solaris])

HSP 1 Score: 532.3 bits (1370), Expect = 1.300e-147
Identity = 273/362 (75.41%), Postives = 306/362 (84.53%), Query Frame = 0 
Query:   58 KSEYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEALIGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGLLKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDKANVLDVSQLWREVVTEE-GQQHPSVELSHMYVDNAAMQLIRWPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLSQPAAADALEAAVEKVLDLGFRTPDIQQ--DGMTLVGCKRMGEEVKKAV 417
            K  Y++TLLPGDGIGPEI  AT  VL  +A +  F+++++EALIGGAA+DAK+DPFP  SL+ C ++DSVLLACIGGYKWDKNPR+ RPETGLLKMRK MGLFANLRPAKVLPQL+ ASTLK EVV GVD+MVVRELTGDVYFGTPKGI ++ NG+R G+NNM+Y ESEI RIA+VA  VA KR  KLCSVDKANVLDVSQLWR+VVT+   +  P VELSHMYVDNAAMQLIRWPKQFDTIVCGN+FGDILSDEASMLVGSLGMLPSAS+GE SGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMML+YDL +P  A  LE AVE  LD G RTPD++Q  DG  LVGC  MG+ V K V
Sbjct:   42 KDSYAVTLLPGDGIGPEITAATKQVLQALATRCNFRIEWKEALIGGAAIDAKNDPFPQESLEQCLASDSVLLACIGGYKWDKNPRELRPETGLLKMRKEMGLFANLRPAKVLPQLIDASTLKREVVEGVDVMVVRELTGDVYFGTPKGI-DMVNGQRVGYNNMIYSESEIDRIARVAGDVASKRGGKLCSVDKANVLDVSQLWRDVVTDVITKDFPEVELSHMYVDNAAMQLIRWPKQFDTIVCGNIFGDILSDEASMLVGSLGMLPSASIGE-SGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLQYDLDRPEEAALLEKAVEAALDAGVRTPDLKQDNDGCKLVGCAEMGQVVAKLV 401
[Close]
BLAST of NO23G01030 vs. NCBI_GenBank
Match: XP_002180930.1 (3-isopropylmalate dehydrogenase [Phaeodactylum tricornutum CCAP 1055/1] >EEC47582.1 3-isopropylmalate dehydrogenase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 531.2 bits (1367), Expect = 3.000e-147
Identity = 276/365 (75.62%), Postives = 303/365 (83.01%), Query Frame = 0 
Query:   58 KSEYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEALIGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGLLKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDKANVLDVSQLWREVVTEE-GQQHPSVELSHMYVDNAAMQLIRWPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLSQPAAADALEAAVEKVLDLGFRTPDIQQ--DGMTLVGCKRMGEEVKKAVVAM 420
            K  Y ITLLPGDGIGPEI  +T  VL  + +K GF +  + ALIGGAA+DA +DPFP  SL+ CQ++DSVLLACIGGYKWD NPR+ RPE+GLLKMRK MGLFANLRPAKVLPQL+ ASTLK EVV GVD+MVVRELTGDVYFGTPKGI  + NGER G+NNM+Y ESEI RIA+VA  VA KR KKLCSVDKANVLDVSQLWREVVT+   +  P VELSHMYVDNAAMQLIRWPKQFDTIVCGN+FGDILSDEASMLVGSLGMLPSAS+GE SGPGVFEPCHGSAPDIAG+DKANPLAMILSAAMML+YDL +P  A  LE AVE VLD G RTPDI+Q  DG  LVGC  MGE V K V  +
Sbjct:   44 KDSYDITLLPGDGIGPEITESTKKVLTALCEKCGFDMNLKVALIGGAAIDAVNDPFPQESLEQCQASDSVLLACIGGYKWDSNPRELRPESGLLKMRKEMGLFANLRPAKVLPQLIDASTLKREVVEGVDVMVVRELTGDVYFGTPKGIETI-NGERVGYNNMIYSESEIDRIARVAGDVASKRGKKLCSVDKANVLDVSQLWREVVTDVITKDFPDVELSHMYVDNAAMQLIRWPKQFDTIVCGNIFGDILSDEASMLVGSLGMLPSASIGE-SGPGVFEPCHGSAPDIAGEDKANPLAMILSAAMMLKYDLDRPDEALLLENAVEAVLDQGLRTPDIKQEGDGCKLVGCSEMGEAVAKIVTEL 406
[Close]
BLAST of NO23G01030 vs. NCBI_GenBank
Match: GAX14108.1 (3-isopropylmalate dehydrogenase [Fistulifera solaris])

HSP 1 Score: 529.3 bits (1362), Expect = 1.100e-146
Identity = 270/362 (74.59%), Postives = 306/362 (84.53%), Query Frame = 0 
Query:   58 KSEYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEALIGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGLLKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDKANVLDVSQLWREVVTEE-GQQHPSVELSHMYVDNAAMQLIRWPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLSQPAAADALEAAVEKVLDLGFRTPDIQQ--DGMTLVGCKRMGEEVKKAV 417
            K  Y++TLLPGDGIGPEI  AT  V+  +A +  F+++++EALIGGAA+DAK+DPFP  SL+ C ++DSVLLACIGGYKWDKNPR+ RPETGLLKMRK MGLFANLRPAKVLPQL+ ASTLK E+V GVD+MVVRELTGDVYFGTPKGI ++ NG+R G+NNM+Y ESEI RIA+VA  VA KR  KLCSVDKANVLDVSQLWR+VVT+   +  P V+LSHMYVDNAAMQLIRWPKQFDTIVCGN+FGDILSDEASMLVGSLGMLPSAS+GE SGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMML+YDL +P  A  LE AVE  LD G RTPD++Q  DG  +VGC  MGE V K V
Sbjct:   39 KDSYAVTLLPGDGIGPEITAATKQVVQALATRCNFRIEWKEALIGGAAIDAKNDPFPQESLEQCLASDSVLLACIGGYKWDKNPRELRPETGLLKMRKEMGLFANLRPAKVLPQLIDASTLKREIVEGVDVMVVRELTGDVYFGTPKGI-DIVNGQRVGYNNMIYSESEIDRIARVAGDVASKRGGKLCSVDKANVLDVSQLWRDVVTDVITKDFPDVQLSHMYVDNAAMQLIRWPKQFDTIVCGNIFGDILSDEASMLVGSLGMLPSASIGE-SGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLQYDLDRPEEAALLEKAVEAALDAGVRTPDLKQENDGCKVVGCAEMGEIVAKLV 398
[Close]
BLAST of NO23G01030 vs. NCBI_GenBank
Match: EJK75346.1 (hypothetical protein THAOC_02929 [Thalassiosira oceanica])

HSP 1 Score: 523.5 bits (1347), Expect = 6.200e-145
Identity = 270/364 (74.18%), Postives = 302/364 (82.97%), Query Frame = 0 
Query:   58 KSEYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEALIGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGLLKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDKANVLDVSQLWREVVTEE-GQQHPSVELSHMYVDNAAMQLIRWPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLSQPAAADALEAAVEKVLDLGFRTPDIQQ--DGMTLVGCKRMGEEVKKAVVA 419
            K  Y ITLLPGDGIGPEIM +   VL  +  + GF+L  +EALIGGAA+DA +DPFPDA+L+ACQSADSVLL+CIGGYKWD NPR+ RPETGLLKMRK+MGLFANLRPAKVL QL+ ASTLK EVV GVD+MVVRELTGDVYFG PKGI    +G+R G+NNM+Y E EI RIA+VA  VA KR  KLCSVDKANVLDVSQLWR+VVT+    + P V+LSHMYVDNAAMQLIRWPKQFDT+V GN+FGDILSDEASMLVGSLGMLPSAS+GE SGPGVFEPCHGSAPDIAG+DKANPLA+ILSAAMMLRYDL++   AD LEAAVE VLD G RT DI+Q  DG  LVGC  MG+ V   V A
Sbjct:   38 KDSYDITLLPGDGIGPEIMESAKSVLSALCDRCGFELNLREALIGGAAIDAVNDPFPDATLEACQSADSVLLSCIGGYKWDGNPRELRPETGLLKMRKSMGLFANLRPAKVLDQLIDASTLKREVVEGVDVMVVRELTGDVYFGAPKGIDTDADGKRVGYNNMIYSEGEIERIARVAGDVASKRNGKLCSVDKANVLDVSQLWRDVVTDVITDEFPDVDLSHMYVDNAAMQLIRWPKQFDTMVTGNIFGDILSDEASMLVGSLGMLPSASIGE-SGPGVFEPCHGSAPDIAGEDKANPLALILSAAMMLRYDLARGEEADILEAAVETVLDQGLRTADIKQEDDGCKLVGCIEMGKAVADVVAA 400
[Close]
BLAST of NO23G01030 vs. NCBI_GenBank
Match: OEU14850.1 (3-isopropylmalate dehydrogenase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 522.3 bits (1344), Expect = 1.400e-144
Identity = 270/365 (73.97%), Postives = 302/365 (82.74%), Query Frame = 0 
Query:   58 KSEYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEALIGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGLLKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDKANVLDVSQLWREVVTEE-GQQHPSVELSHMYVDNAAMQLIRWPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLSQPAAADALEAAVEKVLDLGFRTPD--IQQDGMTLVGCKRMGEEVKKAVVAM 420
            K  YSITLLPGDGIGPEI  AT   L  + +K GF L+ +EALIGGAA+DA +DPFP+ SLQ C S+DSVLLACIGGYKWD NPR+ RPE+GLLKMRK MGLFANLRPAKVLPQL+ ASTLK E++ GVDIM VRELTGDVYFGTPKGI ++ +G+R G+NNM+Y E EI RIA+VA  +A KR  KLCS+DKANVLDVSQLWREVVT+   +  PSVELSHMYVDN AMQLIR+PKQFD IVCGN+FGDILSDEASMLVGSLGMLPSAS+GE SGPGVFEPCHGSAPDIAG DKANPLAMILSAAMML+YDL +P  A  LE AVE VLD GFRTPD  I+ DG  LVGC  MGE V + + AM
Sbjct:   49 KDSYSITLLPGDGIGPEITAATKVALTALCEKSGFTLELKEALIGGAAIDAVNDPFPEESLQQCLSSDSVLLACIGGYKWDNNPRELRPESGLLKMRKEMGLFANLRPAKVLPQLMDASTLKREIIEGVDIMCVRELTGDVYFGTPKGI-DVIDGQRVGYNNMIYSEMEIDRIARVAGDIAAKRGGKLCSIDKANVLDVSQLWREVVTDVITKDFPSVELSHMYVDNCAMQLIRYPKQFDVIVCGNIFGDILSDEASMLVGSLGMLPSASIGE-SGPGVFEPCHGSAPDIAGDDKANPLAMILSAAMMLKYDLDRPEEAKMLEDAVEAVLDKGFRTPDIKIEDDGCQLVGCVAMGEAVAEVITAM 411
[Close]
BLAST of NO23G01030 vs. NCBI_GenBank
Match: XP_005828719.1 (hypothetical protein GUITHDRAFT_158188 [Guillardia theta CCMP2712] >EKX41739.1 hypothetical protein GUITHDRAFT_158188 [Guillardia theta CCMP2712])

HSP 1 Score: 520.0 bits (1338), Expect = 6.800e-144
Identity = 268/359 (74.65%), Postives = 301/359 (83.84%), Query Frame = 0 
Query:   58 KSEYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEALIGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGLLKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDKANVLDVSQLWREVVTEEGQQHPSVELSHMYVDNAAMQLIRWPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLSQPAAADALEAAVEKVLDLGFRTPDIQQDGMTLVGCKRMGEEVKKAV 417
            K  Y +T LPGDGIGPEIM+ATV V   VA K GFK++F+EALIGGAALDA +DPFPD +L+  +S+DSVLLA IGG KWD NPRDKRPETGLLKMRK++GLFANLRPA VLPQL  ASTLKPEVVSGVDIMVVRELTGDVYFG PKGI   ++GER G+NNM YKESE++RIAKVA+ +A KR K++CSVDKANVLDVSQLWR+VV E  + +P VELSHMYVDNAAMQLIR PKQFD +V GN+FGDILSDEASMLVGSLGMLPSAS+G+PSGPGVFEP HGSAPDIAG DKANPLA ILSAAMM RYDL +P AA A+E AV KVLD G RT D+       VGCK+MGEEV K +
Sbjct:    6 KDSYFVTTLPGDGIGPEIMSATVKVCQAVAAKQGFKIEFKEALIGGAALDACNDPFPDETLKQMKSSDSVLLAAIGGPKWDANPRDKRPETGLLKMRKSLGLFANLRPATVLPQLADASTLKPEVVSGVDIMVVRELTGDVYFGEPKGITT-KDGERFGYNNMCYKESEVKRIAKVAFDIARKRGKRVCSVDKANVLDVSQLWRDVVIETHKDYPDVELSHMYVDNAAMQLIRNPKQFDVMVTGNIFGDILSDEASMLVGSLGMLPSASVGDPSGPGVFEPIHGSAPDIAGTDKANPLATILSAAMMFRYDLDRPEAAQAIEDAVNKVLDDGVRTGDLGGK----VGCKQMGEEVCKRI 359
[Close]
BLAST of NO23G01030 vs. NCBI_GenBank
Match: CBJ48759.1 (3-isopropylmalate dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 518.1 bits (1333), Expect = 2.600e-143
Identity = 256/364 (70.33%), Postives = 302/364 (82.97%), Query Frame = 0 
Query:   57 AKSEYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEALIGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGLLKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDKANVLDVSQLWREVVTEEGQQHPSVELSHMYVDNAAMQLIRWPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLSQPAAADALEAAVEKVLDLGFRTPDIQQDGMTLVGCKRMGEEVKKAVVAMM 421
            AK  Y + LLPGDGIGPEI  ATV  L+ +  +  FKL F+EALIGGAA+DA+  P+PD++L   +++DS+LLA IGG KWD NPR+ RPETGLL MR  +GLFANLRPAKV+ +LV AS+LKPE+V GVDIMVVRELTGDVYFGTPKGI  L +GER G+NNM+Y E E+ RIAKVAY VA KR K+LCSVDKANVLDVSQLWR+VV +  + +P VEL+H YVDNAAMQLIRWPKQFD +V GN+FGDILSDEASMLVGSLGMLPSAS+G P GPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDL +PA AD +EAAV+ V+D G+ T DIQ++G T VGCK MG++VK+ +  ++
Sbjct:   48 AKDSYDVMLLPGDGIGPEITAATVNALEPL--QSLFKLNFKEALIGGAAIDAEGSPWPDSTLALAKASDSILLAAIGGPKWDGNPRELRPETGLLAMRSQLGLFANLRPAKVMKELVDASSLKPEIVEGVDIMVVRELTGDVYFGTPKGIDELPSGERVGYNNMIYHEHEVERIAKVAYDVAMKRGKRLCSVDKANVLDVSQLWRDVVIKMSEDYPEVELTHQYVDNAAMQLIRWPKQFDVMVTGNIFGDILSDEASMLVGSLGMLPSASMGNPDGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLGRPAEADMVEAAVDVVMDKGYATNDIQREGTTAVGCKEMGDKVKEELAKLV 409
[Close]
BLAST of NO23G01030 vs. NCBI_GenBank
Match: XP_002290637.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92389.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 512.7 bits (1319), Expect = 1.100e-141
Identity = 268/364 (73.63%), Postives = 300/364 (82.42%), Query Frame = 0 
Query:   58 KSEYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEALIGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGLLKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDKANVLDVSQLWREVVTE-EGQQHPSVELSHMYVDNAAMQLIRWPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLSQPAAADALEAAVEKVLDLGFRTPDIQQDG--MTLVGCKRMGEEVKKAVVA 419
            K  Y ITLLPGDGIGPEIMTAT  VL  +  + GF L+  EALIGGAA+DA +DPFPD SLQ C  +DSVLL+CIGGYKWD NPR+ RPE+GLLKMRK+MGLFANLRPAKVL QL+ ASTLK EVV GVD+MVVRELTGDVYFGTPKGI ++ +G+R G+NNM+Y E EI RIA+VA  VA KR  KLCSVDKANVLDVSQLWR+V T+   ++ P VELSHMYVDNAAMQLIRWPKQFDT+V GN+FGDILSDEASMLVGSLGMLPSAS+GE SGPGVFEPCHGSAPDIAG+DKANPLA+ILSAAMMLRYDL +   AD LE AVE VLD G RT DI+Q+G    LVGC  MG+ V   V A
Sbjct:   49 KDTYQITLLPGDGIGPEIMTATKQVLASLQSRCGFTLEMTEALIGGAAIDAVNDPFPDESLQQCLKSDSVLLSCIGGYKWDSNPRELRPESGLLKMRKSMGLFANLRPAKVLDQLIDASTLKREVVEGVDVMVVRELTGDVYFGTPKGI-DVVDGKRIGYNNMIYSEDEIVRIARVAGDVASKRGGKLCSVDKANVLDVSQLWRDVTTDIITKEFPDVELSHMYVDNAAMQLIRWPKQFDTMVTGNIFGDILSDEASMLVGSLGMLPSASIGE-SGPGVFEPCHGSAPDIAGEDKANPLALILSAAMMLRYDLDRAEEADILERAVEAVLDQGLRTADIKQEGDNCKLVGCIEMGKAVADIVAA 410
[Close]
BLAST of NO23G01030 vs. NCBI_GenBank
Match: WP_106909011.1 (3-isopropylmalate dehydrogenase [Microcystis sp. MC19] >AVQ72174.1 3-isopropylmalate dehydrogenase [Microcystis sp. MC19])

HSP 1 Score: 491.5 bits (1264), Expect = 2.600e-135
Identity = 248/357 (69.47%), Postives = 291/357 (81.51%), Query Frame = 0 
Query:   60 EYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEALIGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGLLKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYFGTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDKANVLDVSQLWREVVTEEGQQHPSVELSHMYVDNAAMQLIRWPKQFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQDKANPLAMILSAAMMLRYDLSQPAAADALEAAVEKVLDLGFRTPDIQQDGMTLVGCKRMGEEVKKAV 417
            +Y ITLLPGDGIGPEI+  TV +L  +AKK   +L FQ ALIGGAA+D   +P P+A+L AC+++D+VLLA IGGYKWD  PR +RPETGLL +R  +GLFANLRPA + PQL+ AS+LK E++ GVDIMVVRELTG VYFG PKGI   E GE+ G N MVY ESE+ RIAKVA+ +A+KR KKLCSVDKANVLDVSQLWR+ VT+    +P VELSH+YVDNAAMQL+R PKQFDTIV GNLFGDILSDEA+ML GS+GMLPSASLG  +G GVFEP HGSAPDIAGQDKANP+A ILSAAMMLRY L+QP AA +LE AVEKVLDLG+RT DI  +GMTLVGC+ MG+ + K +
Sbjct:    4 QYRITLLPGDGIGPEILAVTVEILKVIAKKFDLQLDFQTALIGGAAIDETGNPLPEATLSACKNSDAVLLAAIGGYKWDNLPRQQRPETGLLGLRSGLGLFANLRPATIFPQLIDASSLKREIIEGVDIMVVRELTGGVYFGQPKGIFETETGEKCGVNTMVYLESEVDRIAKVAFEIAQKRGKKLCSVDKANVLDVSQLWRDRVTKMAANYPDVELSHLYVDNAAMQLVRAPKQFDTIVTGNLFGDILSDEAAMLTGSIGMLPSASLG-TAGVGVFEPVHGSAPDIAGQDKANPIAQILSAAMMLRYGLNQPLAAVSLEKAVEKVLDLGYRTGDIFSEGMTLVGCQAMGQAILKVL 359
The following BLAST results are available for this feature:
BLAST of NO23G01030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22938.14.300e-16288.793-isopropylmalate dehydrogenase [Nannochloropsis g... [more]
GAX11963.11.300e-14775.413-isopropylmalate dehydrogenase [Fistulifera solar... [more]
XP_002180930.13.000e-14775.623-isopropylmalate dehydrogenase [Phaeodactylum tri... [more]
GAX14108.11.100e-14674.593-isopropylmalate dehydrogenase [Fistulifera solar... [more]
EJK75346.16.200e-14574.18hypothetical protein THAOC_02929 [Thalassiosira oc... [more]
OEU14850.11.400e-14473.973-isopropylmalate dehydrogenase [Fragilariopsis cy... [more]
XP_005828719.16.800e-14474.65hypothetical protein GUITHDRAFT_158188 [Guillardia... [more]
CBJ48759.12.600e-14370.333-isopropylmalate dehydrogenase [Ectocarpus silicu... [more]
XP_002290637.11.100e-14173.63predicted protein [Thalassiosira pseudonana CCMP13... [more]
WP_106909011.12.600e-13569.473-isopropylmalate dehydrogenase [Microcystis sp. M... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01030.1NO23G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626203gene_8456Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101273g1gene7510Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01030.1NO23G01030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01030 ID=NO23G01030|Name=NO23G01030|organism=Nannochloropsis oceanica|type=gene|length=3448bp
CCCCCTCCTCCCTCCGTTACTCCTTTCCTCTTCTCCAACACCCCTATAAT
CTGCTTCTCCCTAAATACTCGATGACTGATGTAAGCGTCAATCACGCCCA
TTCCCCCTTCCTTAATCTCCTTACCATGCCCTGGGTAAATCACTTCCACG
CACCCTCCCTCCCTCCTCAACCTCCCCAAGCTCTCCATATACGTCTTCAA
GTCGTCGAACACTGTCGTTCCGTGCCCCAGCACACAATCCCCGGAGAACA
AGGCTCCCTTCCCTCCGTTCTTCCCTCCCTCCTTTTTCTGCAGAGCCTTC
TTTAGAGACCCTTCGGCCGTCCCTCCTTCGTCCTCGTCCTCGTCATCGTC
CTCCTCTAGGAGGAAGGAGCAATGGTCAGTGGTATGTCCGGGGGTGTAGA
GGACACGCAGGGTTGCACCTTGGGTGCGAAATATCTGGTTGTCGTGCAGA
GGCAGGAGAGCAGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTTGA
GTTGCTTCCGCAGCAGGGACTGCTGGAGCTGGTCGAGCTGCTGGAGCTGC
TGCTGCCATTTGATTCGTGCGATAAGAGCCACTTATAGGCGGGGATGGTG
GTGGTGGTGGTGGTGGCGGCGGAGGAAGAGGAAGCATAGGAGGGGGAGGA
GGAGGAAGATGATGATGAGGGAGGGAAGGCGGCACGGACGTGGCGCAGGC
CACCGATGTGGTCGTAGTGGTGATGAGTTAGGAGAATGGCTTGGATCGTC
TCGGCACCTGCCTCCTTTAAGGCTTGTCTGAGCAGAGGAATATATTCTTC
TCTACCCTCGCCGGTATCGATGAGCAAACGAGCTTTCCCGGTCCCCACGA
GGTATGTGTTCGTGCCTTGCAGAGTGTGAGCACCAGGGTTGAGACCCAGT
ATACGAATTACGCGTTTGCTGAGTTTTTCTATGTTGGGGAGGTGGGGATA
TGCTGGTGGCATGGCTTTTGCTTTTGTCTGTCCTGGCTTTGATGAAGAAG
ATGGGTGATGCGTCTGCTGATGTGCAGTGGAAGAGCAGCTGCAGGGGGAA
GCAGAGGAGGAGGAGGAAGAAGAGAAACAAGAAGAGGAGGAGGACGGGGA
GGATGTAAGACGTTGTCGCAGCCGGTTATAGATTGGGTGGGCGTGCAAGG
AAGGGGACCAATAACGGTATGCACGGCCCACGAGGGTAATAAAGAAAGAG
AGGAGAATTACAGGTAGCTCCCGAAAGAGGCTATTGCTGTTGCTATTATC
GTTGTCGCTATTGCGGCTGCCGAGAGACATGCACGTTACGCTTGGCTCTG
TCTAGATGGGGCAGATCAAACGCTATGTGTGGGGAAAGGAAGGGAGGAGG
ATTGTCAGGCATGCACTCTTTAAACCCATTTTGAGGTGGACACGAAAGTG
TTGGCAACGCCTTCGCTATATGAAAATAACCTCCCCCCTCTCGTGTGGTA
GGGGGCATGTAGTAACTTCAAAACCTTTGAAACAGAGGGCGCACAGATAC
ATGATAGGATGGACACGCACAGGGAGTCACACCGACAATTCAATAAGTGC
AGAAGCCGGCACCGCGGGTTCGGCGAATTTTGATTGCCGTTTGAAGCTGT
GGCCTCCGCTAGAGGTCATGCCCCAGCCACACGTGGATAGCGAATGAGAC
AGACCACCTGCCTCAGCCCCTTCCCCACTACACTCTCGACAATGGAAGAT
ATGTGAGAATCGCATAGTAGGTATTCATAGACATCTGTTGCCTGAACTCA
TTTCTTCTCACCCTTCATCATCCTCCTGCCCTCAGATCGGAGCCGCTTTG
TTGTTTCCCCTTATCCTCCTCCCTCCAGCTGTACCATCACCAGCACAATG
CTGCGTGCCGTCATCGCCGCCACCACCTCATCCCTCCTCCTGCTTGCCCT
CCTTGCCACCAGCAGCCCATCCACCACACAAGCCTTCCTCCTCCCCTCCC
TCTCCACCTCCCCCTTCCCCTCCCCCCTCCGCCTCCGCGCCCGTGCCTTG
TCCATGGCCGTGGGCGCCAAGAGCGAGTACTCCATCACCCTCCTTCCCGG
TGATGGCATCGGCCCCGAAATTATGACCGCCACGGTGGGCGTTCTCGATG
AAGTAGCGAAGAAGGGTGGGTTTAAGCTTCAATTCCAAGAAGCCCTGATT
GGTGGCGCGGCCCTGGACGCGAAAGACGACCCATTTCCCGATGCATCTCT
CCAGGCCTGCCAGTCTGCGGACTCCGTTCTGCTTGCCTGCATTGGTGGCT
ACAAGTGGGATAAAAATCCCAGGGACAAACGCCCGGAAACGGGCTTGCTT
AAGATGAGGAAAACGATGGGGCTTTTCGCAAATTTGCGGCCAGCCAAGGT
TCTACCGCAGTTGGTGTCAGCCTCGACGCTCAAGCCGGAGGTGGTCTCGG
GGGTGGACATCATGGTGGTGCGTGAACTGACGGGCGACGTATACTTTGGC
ACGCCCAAAGGGATCGTGAACCTTGAGAATGGCGAGCGGGAAGGGTTCAA
CAACATGGTTTATAAGGAGAGTGAGATCCGGCGGATCGCCAAGGTCGCAT
ACGGCGTGGCGGAGAAGCGAACGAAGAAACTCTGTTCAGTCGACAAGGCA
AATGTCCTGGACGTGTCCCAGCTATGGCGCGAGGTCGTGACGGAGGAAGG
CCAGCAGCACCCCTCCGTCGAGCTCTCGCACATGTACGTGGATAACGCCG
CCATGCAGCTCATACGGTGGCCGAAGCAGTTCGACACCATCGTCTGCGGG
AACCTTTTCGGCGACATCCTGTCCGACGAAGCCTCCATGCTCGTGGGCTC
CCTGGGCATGTTGCCGTCAGCCTCCCTCGGCGAGCCCTCCGGGCCGGGTG
TCTTCGAACCGTGCCATGGCTCCGCACCTGATATTGCCGGGCAAGACAAG
GCCAACCCCCTGGCGATGATTTTGTCGGCGGCGATGATGCTGCGGTACGA
CTTGAGCCAGCCGGCAGCGGCGGATGCGCTGGAAGCCGCTGTTGAGAAAG
TGCTTGgtaagtgcaggaggacgggggagggaagcttggcgggtgtggta
tgttttgatagagttcgattaagcgaacatctgggcaatcactttttcat
gccatttcgtctcatcctcccttacttcctccctatcaaaattttccagA
TCTGGGTTTCCGCACACCCGATATTCAACAGGACGGTATGACGCTGGTAG
GATGTAAGAGGATGGGAGAAGAAGTCAAGAAGGCAGTGGTGGCAATGATG
TAATGCGAGGGGGGAGGAAGCGATAGGTGAAGAGAAAGAGGCGAATCAGT
CTAGAGGTTCCTGGATAAGTGAACGAGAGTGAGGGGATGGGCTTGGGGTT
GGGGGGCGATGAGAAGGAAGGGGAGAAGATAAATTGAGGGAGAAGCAGTG
GGATGCCTCACTAGAACAAAAGAAGAAAGAAAACGAACACTTGGTACG
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protein sequence of NO23G01030.1

>NO23G01030.1-protein ID=NO23G01030.1-protein|Name=NO23G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MLRAVIAATTSSLLLLALLATSSPSTTQAFLLPSLSTSPFPSPLRLRARA
LSMAVGAKSEYSITLLPGDGIGPEIMTATVGVLDEVAKKGGFKLQFQEAL
IGGAALDAKDDPFPDASLQACQSADSVLLACIGGYKWDKNPRDKRPETGL
LKMRKTMGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVRELTGDVYF
GTPKGIVNLENGEREGFNNMVYKESEIRRIAKVAYGVAEKRTKKLCSVDK
ANVLDVSQLWREVVTEEGQQHPSVELSHMYVDNAAMQLIRWPKQFDTIVC
GNLFGDILSDEASMLVGSLGMLPSASLGEPSGPGVFEPCHGSAPDIAGQD
KANPLAMILSAAMMLRYDLSQPAAADALEAAVEKVLDLGFRTPDIQQDGM
TLVGCKRMGEEVKKAVVAMM*
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Synonyms
Publications