NO22G01340, NO22G01340 (gene) Nannochloropsis oceanica

Overview
NameNO22G01340
Unique NameNO22G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length846
Alignment locationchr22:399685..400530 -

Link to JBrowse

Properties
Property NameValue
DescriptionHistone H2A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:399685..400530 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_core_D
IPR032454Histone_H2A_C
IPR002119Histone_H2A
Homology
[Close]
BLAST of NO22G01340 vs. NCBI_GenBank
Match: EWM21492.1 (histone 2 [Nannochloropsis gaditana])

HSP 1 Score: 205.7 bits (522), Expect = 9.400e-50
Identity = 135/138 (97.83%), Postives = 135/138 (97.83%), Query Frame = 0 
Query:    1 MSGAGKGAGXXXXXXXXXXXXXXXXXXXXXXXXAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKTKGAKTK 139
            MSGAGKGA XXXXXXXXXXXXXXXXXXXXXXXXAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITK KGAK K
Sbjct:   20 MSGAGKGAXXXXXXXXXXXXXXXXXXXXXXXXXAGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKAKGAKAK 157
[Close]
BLAST of NO22G01340 vs. NCBI_GenBank
Match: XP_009033301.1 (hypothetical protein AURANDRAFT_59843 [Aureococcus anophagefferens] >EGB12231.1 hypothetical protein AURANDRAFT_59843 [Aureococcus anophagefferens])

HSP 1 Score: 183.3 bits (464), Expect = 5.000e-43
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 0 
Query:   34 AGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKTKGAK 137
            AGLQFPVGR+HRFLK RVT SQRVGATAAVYTAAILEYLTAEVLELAGNACKDLK+KRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K+   K
Sbjct:   31 AGLQFPVGRLHRFLKLRVTASQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKMKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKKK 133
[Close]
BLAST of NO22G01340 vs. NCBI_GenBank
Match: EJK72006.1 (hypothetical protein THAOC_06502 [Thalassiosira oceanica])

HSP 1 Score: 182.2 bits (461), Expect = 1.100e-42
Identity = 94/105 (89.52%), Postives = 98/105 (93.33%), Query Frame = 0 
Query:   34 AGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKTKGAKTK 139
            AGLQFPVGR+HRFLK  V  SQRVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K++G KTK
Sbjct:   76 AGLQFPVGRVHRFLKNSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSQG-KTK 179
[Close]
BLAST of NO22G01340 vs. NCBI_GenBank
Match: CBJ32072.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 181.0 bits (458), Expect = 2.500e-42
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 0 
Query:   34 AGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKT 133
            AGLQFPVGRIHRFLK+RV + QRVGAT+AVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSL+ KT
Sbjct:   31 AGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKT 129
[Close]
BLAST of NO22G01340 vs. NCBI_GenBank
Match: XP_002286413.1 (histone H2A, partial [Thalassiosira pseudonana CCMP1335] >EED96054.1 histone H2A, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 179.9 bits (455), Expect = 5.500e-42
Identity = 91/101 (90.10%), Postives = 94/101 (93.07%), Query Frame = 0 
Query:   34 AGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKTKG 135
            AGLQFPVGR+HRFLK  V  SQRVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K+ G
Sbjct:   24 AGLQFPVGRVHRFLKKSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSTG 124
[Close]
BLAST of NO22G01340 vs. NCBI_GenBank
Match: BAS30518.1 (histone H2A-like-1 [Polyblepharides amylifera])

HSP 1 Score: 179.5 bits (454), Expect = 7.200e-42
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 
Query:   34 AGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKT 133
            AGLQFPVGRIHRFLK+RVTT+ RVGATAAVY+AAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI KT
Sbjct:   36 AGLQFPVGRIHRFLKSRVTTNGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKT 134
[Close]
BLAST of NO22G01340 vs. NCBI_GenBank
Match: XP_002181345.1 (histone H2A isoform 1 [Phaeodactylum tricornutum CCAP 1055/1] >EEC47268.1 histone H2A isoform 1 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 179.1 bits (453), Expect = 9.400e-42
Identity = 91/105 (86.67%), Postives = 95/105 (90.48%), Query Frame = 0 
Query:   34 AGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKTKGAKTK 139
            AGLQFPVGR+HRFLK  V    RVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLI K++G   K
Sbjct:   31 AGLQFPVGRVHRFLKNSVHQGHRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSQGKGKK 135
[Close]
BLAST of NO22G01340 vs. NCBI_GenBank
Match: OEU15656.1 (histone H2A [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 179.1 bits (453), Expect = 9.400e-42
Identity = 93/106 (87.74%), Postives = 96/106 (90.57%), Query Frame = 0 
Query:   34 AGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITK-TKGAKTK 139
            AGLQFPVGR+HRFLK  V    RVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLI K +KG K K
Sbjct:   31 AGLQFPVGRVHRFLKNSVHQGSRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSSKGKKAK 136
[Close]
BLAST of NO22G01340 vs. NCBI_GenBank
Match: GAX12298.1 (histone H2A [Fistulifera solaris])

HSP 1 Score: 178.3 bits (451), Expect = 1.600e-41
Identity = 92/106 (86.79%), Postives = 96/106 (90.57%), Query Frame = 0 
Query:   34 AGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKT-KGAKTK 139
            AGLQFPVGR+HRFLK  V    RVGATAAVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSL+ KT KG K +
Sbjct:   31 AGLQFPVGRVHRFLKKSVHQGHRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLVNKTGKGKKAQ 136
[Close]
BLAST of NO22G01340 vs. NCBI_GenBank
Match: BAS30512.1 (histone H2A-like-1 [Pyramimonas parkeae])

HSP 1 Score: 176.4 bits (446), Expect = 6.100e-41
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0 
Query:   34 AGLQFPVGRIHRFLKTRVTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLITKT 133
            AGLQFPVGRIHRFLK+R TT+ RVGATAAVY+AAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLI K+
Sbjct:   36 AGLQFPVGRIHRFLKSRATTNGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKS 134
The following BLAST results are available for this feature:
BLAST of NO22G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21492.19.400e-5097.83histone 2 [Nannochloropsis gaditana][more]
XP_009033301.15.000e-4390.29hypothetical protein AURANDRAFT_59843 [Aureococcus... [more]
EJK72006.11.100e-4289.52hypothetical protein THAOC_06502 [Thalassiosira oc... [more]
CBJ32072.12.500e-4291.92conserved unknown protein [Ectocarpus siliculosus][more]
XP_002286413.15.500e-4290.10histone H2A, partial [Thalassiosira pseudonana CCM... [more]
BAS30518.17.200e-4292.93histone H2A-like-1 [Polyblepharides amylifera][more]
XP_002181345.19.400e-4286.67histone H2A isoform 1 [Phaeodactylum tricornutum C... [more]
OEU15656.19.400e-4287.74histone H2A [Fragilariopsis cylindrus CCMP1102][more]
GAX12298.11.600e-4186.79histone H2A [Fistulifera solaris][more]
BAS30512.16.100e-4190.91histone H2A-like-1 [Pyramimonas parkeae][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004128NSK004128Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01340.1NO22G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595736gene_7138Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g53gene8941Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01340.1NO22G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01340 ID=NO22G01340|Name=NO22G01340|organism=Nannochloropsis oceanica|type=gene|length=846bp
ATGgtacgtatagctatgtcagctcagatagggaaggcagctgcgtcgtg
cagggtatggcggggcttattcgctttccgtttcttgctttgatgtccct
ctcactctccttaccccccactctcccttcctcacagTCTGGCGCAGGCA
AAGGTGCAGGGAAGGGCGGCAAGGCCGGGAAGGGAGGAAAGGGGGCCAGT
GGCAAGCGTGCTCCCCAGTCTCGATCCTCTCGTGCGGGTCTCCAGgtacg
tgatgactgagagttggatggatgcgtgactcatctcaccttaacccccc
tgaccatgattgtgtgtgtctatgtgcgtgtgtgtgtgtcgtgtaaatgt
cggcagggatttgcagcaggcaagcatggttgggaacgataatgagaagg
atgatgcatgcctgcgtgtccctgccgacattcgatacggtgtgtggacg
tgttactagttttgagtcgcaccttgcgtgcttgtgtgttttccctatcc
atggctcaaatcccctgccctctccgttctcccactacagTTCCCCGTCG
GGCGTATCCACCGTTTCCTCAAGACCCGTGTGACGACGAGCCAGCGCGTG
GGTGCCACCGCTGCTGTCTACACGGCCGCCATCCTGGAGTACCTGACGGC
CGAGGTCCTGGAGCTTGCCGGTAACGCCTGCAAGGACTTGAAGGTGAAGC
GTATCACTCCCCGTCACTTGCAGCTCGCCATTCGTGGTGACGAGGAGCTG
GACGCGCTCATTAAGGCGACCATTGCCGGAGGTGGTGTCATCCCCCACAT
CCACAAATCTCTCATCACCAAGACCAAGGGCGCCAAGACCAAGTAA
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protein sequence of NO22G01340.1

>NO22G01340.1-protein ID=NO22G01340.1-protein|Name=NO22G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSGAGKGAGKGGKAGKGGKGASGKRAPQSRSSRAGLQFPVGRIHRFLKTR
VTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLA
IRGDEELDALIKATIAGGGVIPHIHKSLITKTKGAKTK*
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Synonyms
Publications