NO22G00020, NO22G00020 (gene) Nannochloropsis oceanica

Overview
NameNO22G00020
Unique NameNO22G00020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length919
Alignment locationchr22:4963..5881 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:4963..5881 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel
IPR005545YCII
Homology
BLAST of NO22G00020 vs. NCBI_GenBank
Match: XP_005852806.1 (hypothetical protein NGA_0391902 [Nannochloropsis gaditana CCMP526] >XP_005855006.1 hypothetical protein NGA_0391901 [Nannochloropsis gaditana CCMP526] >EKU21360.1 hypothetical protein NGA_0391901 [Nannochloropsis gaditana CCMP526] >EKU23027.1 hypothetical protein NGA_0391902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 163.7 bits (413), Expect = 4.500e-37
Identity = 77/101 (76.24%), Postives = 89/101 (88.12%), Query Frame = 0
Query:   51 MSSTVAVTPTTLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVFTDKAVAEAFPAEDPYVKAGLVREWKVRPWTVVAGSKL 152
            MSS  A+TPTTLW+LQYHYV DIL++R PHRA HLAGL QAA +G++VLGGALADPVDMG+LVFTDK+VAE F A D YVKAGLV+EW+VR WTVVAGSK+
Sbjct:    9 MSSAQAITPTTLWLLQYHYVNDILDRRGPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKEWQVRQWTVVAGSKI 109          
BLAST of NO22G00020 vs. NCBI_GenBank
Match: EWM20419.1 (Dimeric alpha-beta barrel [Nannochloropsis gaditana])

HSP 1 Score: 161.4 bits (407), Expect = 2.200e-36
Identity = 89/151 (58.94%), Postives = 107/151 (70.86%), Query Frame = 0
Query:    1 MLRFAPVAVLAARTAFSCCAHSVAVARDFAASSPFKFSSLLFLRVVPRRAMSSTVAVTPTTLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVFTDKAVAEAFPAEDPYVKAGLVREWKVRPWTVVAGSKL 152
            ML   P  +LA+R +   C  S+       A+  F    LL      +R MSS  A+TPTTLW+LQYHYV DIL++R PHRA HLAGL QAA +G++VLGGALADPVDMG+LVFTDK+VAE F A D YVKAGLV+ W+VR WTVVAGSK+
Sbjct:   31 MLHSVP-GMLASRAS---CRFSIRHTFQLNATQRFPTQPLL----QHKRVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSKI 173          
BLAST of NO22G00020 vs. NCBI_GenBank
Match: KOO27323.1 (hypothetical protein Ctob_010138 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 103.2 bits (256), Expect = 7.200e-19
Identity = 56/116 (48.28%), Postives = 69/116 (59.48%), Query Frame = 0
Query:   37 FSSLLFLRVVP---RRAMSSTVAVTPTTLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVFTDKAVAEAFPAEDPYVKAGLVREWKVRPWTVVAGS 150
            F  LL L   P    RA+SS+   T   L +L Y YV D +EKR P+RA HL     +   G ++LGGALA+PVD G+L+FT  A AE F   DPYV  G+V  W VR W+VV GS
Sbjct:    3 FRGLLRLSATPAARARALSSSAPPTVRPLHLLLYQYVDDAVEKRQPYRANHLGHARASIDRGELLLGGALANPVDGGVLIFTAGAAAERFAETDPYVLNGIVTSWTVREWSVVVGS 118          
BLAST of NO22G00020 vs. NCBI_GenBank
Match: WP_096341576.1 (hypothetical protein [Sphingomonas spermidinifaciens] >PCD03177.1 hypothetical protein COC42_01785 [Sphingomonas spermidinifaciens])

HSP 1 Score: 103.2 bits (256), Expect = 7.200e-19
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = 0
Query:   61 TLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVFTDKAVAEAFPAEDPYVKAGLVREWKVRPWTVVAGS 150
            T W+L+Y + PD LE+R   RA HL    +AA  GT++LGGA  DP D G+LVFT +  AEAF   DPYV AGLV +W ++PWT V G+
Sbjct:    2 THWLLRYRFAPDYLERRATFRAEHLGIAWEAADAGTLILGGAAGDPPDEGLLVFTTREAAEAFAGADPYVAAGLVLDWTLKPWTTVVGA 90          
BLAST of NO22G00020 vs. NCBI_GenBank
Match: XP_022839434.1 (YCII-related [Ostreococcus tauri] >CEF98724.1 YCII-related [Ostreococcus tauri])

HSP 1 Score: 99.4 bits (246), Expect = 1.000e-17
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 0
Query:   44 RVVPRRAMSSTVAVTPT-TLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVF--TDKAVAEAFPAEDPYVKAGLVREWKVRPWTVVAGS 150
            RVV  R+ +  ++  P+ + W+L  +YV ++ E+R P+R  HLAG + + A G  V+ GAL DPVD G+ VF   D++V  AF   D YVK GLV  W VRPWTVV G+
Sbjct:   45 RVVKSRSSAVAMSAAPSNSYWLLTLNYVENMAERRGPYREEHLAGASASHAKGECVMAGALTDPVDTGVFVFKNCDESVVRAFAENDAYVKNGLVTSWNVRPWTVVVGN 153          
BLAST of NO22G00020 vs. NCBI_GenBank
Match: CAP43687.1 (conserved hypothetical protein [Bordetella petrii])

HSP 1 Score: 97.1 bits (240), Expect = 5.200e-17
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 0
Query:   45 VVPRRAMSSTVAVTPTTLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVFTDK--AVAEAFPAEDPYVKAGLVREWKVRPWTVVAGSK 151
            + P R  S+  A+     ++L Y  VPD LE+R   R  HLA   QA A G +VLGGALADP D  +L+F  +  AVAEAF   DPYV+AGLV++W+VR WT V G +
Sbjct:    9 IEPSRQFSAGAAMH----YLLFYDLVPDYLERRGEFRDTHLALARQAVARGELVLGGALADPADQAVLLFKGESPAVAEAFAQADPYVQAGLVKQWRVRRWTTVVGEQ 112          
BLAST of NO22G00020 vs. NCBI_GenBank
Match: WP_041863027.1 (hypothetical protein [Bordetella petrii])

HSP 1 Score: 97.1 bits (240), Expect = 5.200e-17
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 0
Query:   63 WMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVFTDK--AVAEAFPAEDPYVKAGLVREWKVRPWTVVAGSK 151
            ++L Y  VPD LE+R   R  HLA   QA A G +VLGGALADP D  +L+F  +  AVAEAF   DPYV+AGLV++W+VR WT V G +
Sbjct:    3 YLLFYDLVPDYLERRGEFRDTHLALARQAVARGELVLGGALADPADQAVLLFKGESPAVAEAFAQADPYVQAGLVKQWRVRRWTTVVGEQ 92          
BLAST of NO22G00020 vs. NCBI_GenBank
Match: WP_046347348.1 (hypothetical protein [Sphingomonas changbaiensis] >GAO38496.1 hypothetical protein SCH01S_16_00120 [Sphingomonas changbaiensis NBRC 104936])

HSP 1 Score: 97.1 bits (240), Expect = 5.200e-17
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0
Query:   63 WMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVFTDKAVAEAFPAEDPYVKAGLVREWKVRPWTVVAGSK 151
            ++L Y   PD LE+R+  R  HL    +AA  G ++LGGA+ DP +  +L+FTD+A AEAF   DPYV  GLV+EW+VRPWT V G +
Sbjct:    4 FILTYELAPDYLERRSQFRTEHLKLAWEAADQGALLLGGAVGDPPESAMLLFTDRAAAEAFAKADPYVAQGLVKEWRVRPWTTVVGKE 91          
BLAST of NO22G00020 vs. NCBI_GenBank
Match: XP_001744810.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ90043.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 96.7 bits (239), Expect = 6.700e-17
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0
Query:   54 TVAVTPTTLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVFTDKAVAEAFPAEDPYVKAGLVREWKVRPWTVVAGS 150
            T A TP  L +L+Y +V ++ EKR PHR+ HL     AA  G+++LGGA A+PVD G L+F     A  F  +DPYV+  LVR++++R W+VV GS
Sbjct:   30 TAAATPVPLAVLKYFFVENMAEKRVPHRSAHLQLARDAARRGSLLLGGAAANPVDAGFLIFRSPQEAREFAEQDPYVRGELVRKYEIREWSVVVGS 125          
BLAST of NO22G00020 vs. NCBI_GenBank
Match: ADB53320.1 (YCII-related protein [Conexibacter woesei DSM 14684])

HSP 1 Score: 95.9 bits (237), Expect = 1.100e-16
Identity = 48/88 (54.55%), Postives = 57/88 (64.77%), Query Frame = 0
Query:   59 PTTLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVFTDKAVAEAFPAEDPYVKAGLVREWKVRPWTVV 147
            P TL +L Y YV DILE+R PHR  HLA ++     G +V+ GA+ DPV  G+ V  D A A AF AEDPYV AGLV   +V PWTVV
Sbjct:    2 PETLHLLSYDYVADILERRAPHREAHLAAISAFHRAGRIVMAGAVGDPVAGGLFVLRDAADAAAFMAEDPYVAAGLVTAHRVEPWTVV 89          
The following BLAST results are available for this feature:
BLAST of NO22G00020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852806.14.500e-3776.24hypothetical protein NGA_0391902 [Nannochloropsis ... [more]
EWM20419.12.200e-3658.94Dimeric alpha-beta barrel [Nannochloropsis gaditan... [more]
KOO27323.17.200e-1948.28hypothetical protein Ctob_010138 [Chrysochromulina... [more]
WP_096341576.17.200e-1952.81hypothetical protein [Sphingomonas spermidinifacie... [more]
XP_022839434.11.000e-1745.87YCII-related [Ostreococcus tauri] >CEF98724.1 YCII... [more]
CAP43687.15.200e-1749.07conserved hypothetical protein [Bordetella petrii][more]
WP_041863027.15.200e-1754.44hypothetical protein [Bordetella petrii][more]
WP_046347348.15.200e-1750.00hypothetical protein [Sphingomonas changbaiensis] ... [more]
XP_001744810.16.700e-1746.88hypothetical protein [Monosiga brevicollis MX1] >E... [more]
ADB53320.11.100e-1654.55YCII-related protein [Conexibacter woesei DSM 1468... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR115ngnoR115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00020.1NO22G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100386g2gene9986Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00020.1NO22G00020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00020 ID=NO22G00020|Name=NO22G00020|organism=Nannochloropsis oceanica|type=gene|length=919bp
ACAGTTCACCTGCATGCTACGTTTTGCACCCGTCGCTGTACTCGCTGCAC
GGACCGCTTTTTCGTGCTGCGCGCATTCGGTTGCTGTTGCGAGAGACTTT
GCTGCTTCCTCGCCCTTCAAGTTCTCTTCTCTTCTGTTCCTAAGAGTCGT
GCCCAGGCGAGgtaagtacgctttctagctgtgtaatgtatgtttgacaa
tgctatgtgtggtggataaacagaatgaaaatagcatgaacattcataca
gattcaaggaaataaatctcgtctttatcaacctccccctcactcaccat
atcattcccgaaccaagCCATGTCGTCCACCGTCGCCGTCACTCCCACCA
CCCTGTGGATGCTGCAATATCACTATGTCCCTGATATCCTGGAGAAGCGC
ACACCTCACCGCGCAGGGCATCTGGCGGGCTTGAATCAGGCAGCGGCCGA
CGGGACGATGGTCTTAGgtatgacttggagggggatttcgcgccgcaaaa
ggagggaggagaaagaaagagatgcaattaaataacagcgagcttctctc
ttttcccccatccatccgcttcttcgttttcacatactcacctaattctt
ctttcttttcccttccccgtgtagGCGGAGCCCTGGCCGACCCCGTGGAC
ATGGGCATCTTGGTGTTCACTGACAAGGCCGTAGCCGAGGCCTTCCCGGC
TGAGGATCCATATGTAAAGGCGGGATTAGTCAGGGAATGGAAAGTCCGGC
CGTGGACCGTGGTGGCGGGTAGCAAGTTGTGAGGGAGGGAAGGAGGGAGG
TGGGGAAGGGTGGGATAGTCGTCAGGGGCCGGGTATGGATGGGAAAGGGC
GGGAGACCAGAGATAGAAAGAGAGGTGTCTGCGAACGACAAGGAAAGGAA
ATAAATGACTAAAGCGTGT
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protein sequence of NO22G00020.1

>NO22G00020.1-protein ID=NO22G00020.1-protein|Name=NO22G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MLRFAPVAVLAARTAFSCCAHSVAVARDFAASSPFKFSSLLFLRVVPRRA
MSSTVAVTPTTLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLG
GALADPVDMGILVFTDKAVAEAFPAEDPYVKAGLVREWKVRPWTVVAGSK
L*
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Synonyms
Publications