NO21G02120, NO21G02120 (gene) Nannochloropsis oceanica

Overview
NameNO21G02120
Unique NameNO21G02120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1099
Alignment locationchr21:627002..628100 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:627002..628100 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO21G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02120.1NO21G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602759gene_8183Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02120.1NO21G02120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02120 ID=NO21G02120|Name=NO21G02120|organism=Nannochloropsis oceanica|type=gene|length=1099bp
ATGCGCATGTCCATGCTCCGCCTAGGTGGGCTCTTCCTCGCCGTGGCCCT
CTTTGGTGCCTGTACGCTCCCCAATGTCGAGGCCAACAAGACGCgtaagt
cttgggggaaggtgctttgccctctgcagaggtggttcctgtccacataa
gttgaacagagcttgaaaaggcagcagtaatgcagcacccatccgtctca
tctccacacaccctcacccttgaaacacagCCAAGGTCGCAAGGGTCCGC
TATTCCAAGGCCAAGGCCTTCACCGCATGCTTCAGCAACATTAACTTCGA
GGAGGACGAGGGAAACGACAACGACATTGATTTTTTCCAATGGGAAGCTC
AGGTTTTCGACTGCTCGGACAACgtacgtacttttcatgtgctcctcgtc
cttgaccttgagcccatctgtgcccatgtttgaagcccactattgaccct
ttttcacacacgacgtttcatatagCCAGCAATCGACACTCCAGTGGGGT
CGTCCACCTTTGCTTGCAGCTATGCCGACGACCAGGATGAAAATTTCCGC
ATTGGTGTTTGCAATGGGAACATTGTGATCGCTGGCAATGCGCTTTACGT
GTCCTTCACCATGGACCGCGAgtaagtgctattgtgtgcattattgttgt
tgtaatgatatcatgattattattttatctttatcaaaagctcagctcta
ggcagtggcgtgcctagttacttttggggtgcgagagagatctagagaaa
agtgatctttatgctcgtttcgctcctctgactcttcatgccttgcccaa
acctcaccttaaccagTGACGTGTCGGAAGACCAATTGTTCCCTAGCCGA
GCCCAGTACCCGGCCATAGTCGGGAGTACCGGGCTCTTCCCCAGGAATCC
TGTCAAGTACGATGATATCGAGTTCGTGAATgtacgtacactacatttag
gtctcttctctttccgaaacacacacatttaacccatcttcaactcatac
actacacaacagGGCACGTCGACGGATTTCCCCGTGAGTGTCACCCTCAC
ATATAAGGGGAGGCAGTACAACCCCATGGTGCCCGTCACCCTGAAGTAG
back to top

protein sequence of NO21G02120.1

>NO21G02120.1-protein ID=NO21G02120.1-protein|Name=NO21G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MRMSMLRLGGLFLAVALFGACTLPNVEANKTPKVARVRYSKAKAFTACFS
NINFEEDEGNDNDIDFFQWEAQVFDCSDNPAIDTPVGSSTFACSYADDQD
ENFRIGVCNGNIVIAGNALYVSFTMDRDDVSEDQLFPSRAQYPAIVGSTG
LFPRNPVKYDDIEFVNGTSTDFPVSVTLTYKGRQYNPMVPVTLK*
back to top
Synonyms
Publications