NO21G00170, NO21G00170 (gene) Nannochloropsis oceanica

Overview
NameNO21G00170
Unique NameNO21G00170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2340
Alignment locationchr21:54210..56549 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:54210..56549 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO21G00170 vs. NCBI_GenBank
Match: EWM20775.1 (hypothetical protein Naga_100549g2 [Nannochloropsis gaditana])

HSP 1 Score: 99.0 bits (245), Expect = 1.800e-17
Identity = 75/204 (36.76%), Postives = 108/204 (52.94%), Query Frame = 0
Query:    1 MRSAFSLLALGTTF---VLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKT-SSESFYYKLSGVFRRQEFTA-TVATPLTVIFAAGNVGTLAVTNTDCTE--KDGAKSTRYLCTPGASTPAPTGLP 198
            MRSAFS LA+G TF   ++T A   + L SI+AVD +  NKD W +KG +DDP+ T VP +   GL V L D  +  ++ V FA S+C    N +   CK+ GAR ++ K ++ PK  + + +  H KT +S   YY+++G  R   F    V +PLT      N   L+ T T C +  +   ++T   C PG   P P   P
Sbjct:    1 MRSAFSFLAVGITFGSSLVTTAGQDLNLKSIRAVDRSVANKDTWKMKGKIDDPSMTIVPEIAQTGLIVELQDGGSDPLNTVTFAASDCRVPTNGRRATCKIRGARVSI-KSSRRPK--LKTPKTVHAKTYNSTGGYYRVTGACRGLTFLEDLVLSPLTAKLTV-NGDVLSDTLTSCYDLPRMNGRNTITHCEPGPPVPTPGXXP 200          
BLAST of NO21G00170 vs. NCBI_GenBank
Match: EWM26484.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 95.5 bits (236), Expect = 2.000e-16
Identity = 74/202 (36.63%), Postives = 106/202 (52.48%), Query Frame = 0
Query:    1 MRSAFSLLALGTTF----VLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKT-SSESFYYKLSGVFRRQEFTAT-VATPLTVIFAAGNVGTLAVTNTDCTE--KDGAKSTRYLCTPGASTPAPT 195
            MRSA SLL LG TF    V TA Q +  L SI+ VD +  NKD W +KG ++DP+ T VP +   GL V L D+    ++ V FA S+C    + +   CK+ GAR ++ K ++ PK  + + +  H K+ +S   YY ++G FR   F    V +PLT      N   L+ T T C +  +   ++T   C PG   P PT
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDL-NLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSI-KTSRRPK--VKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRI-NGSVLSDTLTSCYDLARKSGRNTISHCEPGPPAPTPT 197          
BLAST of NO21G00170 vs. NCBI_GenBank
Match: EWM26485.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 95.5 bits (236), Expect = 2.000e-16
Identity = 74/202 (36.63%), Postives = 106/202 (52.48%), Query Frame = 0
Query:    1 MRSAFSLLALGTTF----VLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKT-SSESFYYKLSGVFRRQEFTAT-VATPLTVIFAAGNVGTLAVTNTDCTE--KDGAKSTRYLCTPGASTPAPT 195
            MRSA SLL LG TF    V TA Q +  L SI+ VD +  NKD W +KG ++DP+ T VP +   GL V L D+    ++ V FA S+C    + +   CK+ GAR ++ K ++ PK  + + +  H K+ +S   YY ++G FR   F    V +PLT      N   L+ T T C +  +   ++T   C PG   P PT
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDL-NLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSI-KTSRRPK--VKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRI-NGSVLSDTLTSCYDLARKSGRNTISHCEPGPPAPTPT 197          
BLAST of NO21G00170 vs. NCBI_GenBank
Match: EWM27397.1 (hypothetical protein Naga_101181g1 [Nannochloropsis gaditana])

HSP 1 Score: 94.4 bits (233), Expect = 4.400e-16
Identity = 72/202 (35.64%), Postives = 101/202 (50.00%), Query Frame = 0
Query:    1 MRSAFSLLALGTTF---VLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPK--SAMISAQKKHNKTSSESFYYKLSGVFRRQEFTAT-VATPLTVIFAAGNVGTLAVTNTDCTE---KDGAKSTRYLCTPGASTPAP 194
            MRS  SLLALG T    ++T     + L SI+AVD +  NKD W +KG ++DP+ T VP +   GL V L D+    ++ V FA  +C    + K   CK+ GAR  + K ++ PK  +      K++N T     YY ++G FRR  F    V +PLT      N   L+ T T C +   K+G     + C PG   P P
Sbjct:   69 MRSTLSLLALGITLGSTLVTTTGQSLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVPTIGQKGLTVELQDATTDLLNTVTFAARDCRVPAHGKRAACKIRGARVFI-KTSRRPKINTPKTVHAKRYNSTGG---YYSVTGTFRRLTFLENPVVSPLTAALTV-NESVLSDTLTSCYDLPRKNGRNPITH-CEPGPPVPTP 264          
BLAST of NO21G00170 vs. NCBI_GenBank
Match: EWM27399.1 (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 1.100e-14
Identity = 72/202 (35.64%), Postives = 105/202 (51.98%), Query Frame = 0
Query:    1 MRSAFSLLA----LGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKT-SSESFYYKLSGVFRRQEFTAT-VATPLTVIFAAGNVGTLAVTNTDC--TEKDGAKSTRYLCTPGASTPAPT 195
            MRS  SLLA    LG+T V TA Q +  L SI+AVD +  NKD W +KG ++DP+ T V  +   GL V L D+    ++ V FA S+C    + +   CK+ GAR ++ K ++ PK  + + +  H K+ +S   YY ++G FR   F    V +PLT      +   L+ T T C    +   ++T   C PG   P PT
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDL-NLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSI-KTSRRPK--IKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTV-DESVLSDTLTLCYNLPRKNGRNTISHCEPGPPVPTPT 197          
BLAST of NO21G00170 vs. NCBI_GenBank
Match: EWM25644.1 (hypothetical protein Naga_100037g5 [Nannochloropsis gaditana])

HSP 1 Score: 81.6 bits (200), Expect = 2.900e-12
Identity = 58/157 (36.94%), Postives = 77/157 (49.04%), Query Frame = 0
Query:   35 RENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEF-TATVATPLTVIFAAGNVGTLAVTNTDCTE------KDGAKSTRYLC 185
            +  +D+W++ G+ +DP  T V  +   G+   L D+    +S+  F P +C  L N +G  CK TGAR  L+K  K P     S + K    SSE  +YK+ GVFRR  F    V TPLT IFA     T  V  T  TE      K G K T+  C
Sbjct:  163 KAKRDRWTITGFFNDPAETAVVNIGQYGIIAVLQDAAKKALSSTFFTPPQCKALNNIRGVTCKTTGARLRLKK-TKDP-----SVRNK----SSEGAFYKVKGVFRRLTFLQQPVQTPLTTIFAVQFPNTTTVFTTSATEQCTEKGKTGGKKTKIDC 309          
The following BLAST results are available for this feature:
BLAST of NO21G00170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 16
Match NameE-valueIdentityDescription
EWM20775.11.800e-1736.76hypothetical protein Naga_100549g2 [Nannochloropsi... [more]
EWM26484.12.000e-1636.63Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM26485.12.000e-1636.63Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM27397.14.400e-1635.64hypothetical protein Naga_101181g1 [Nannochloropsi... [more]
EWM27399.11.100e-1435.64hypothetical protein Naga_100212g1, partial [Nanno... [more]
EWM25644.12.900e-1236.94hypothetical protein Naga_100037g5 [Nannochloropsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR093ncniR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR100ngnoR100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00170.1NO21G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00170.1NO21G00170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00170 ID=NO21G00170|Name=NO21G00170|organism=Nannochloropsis oceanica|type=gene|length=2340bp
GGCCAACCGAAAAACAAAAGGAAACCGACCGCCAACCGGAAATCACAAAA
ACCAAAAAAAAACAAAAAAAACAAAAAACCAGAGAAATAAAAACTTCCAA
AATGCGCTTTTGCTCTTCCGTCTTCCTGTTGTGTGTGATAATTCTTTGTA
CATTGTTCTTGTCACATGCACACACATGTAATCGACCAGAGGCTGGCCCC
AATCACTGATTGGTCTCTACCTGAGGGACTCTGAGCGCCCCATGGATTCC
CTAGCTTCTTTGCGCTATGCTATCCTATGGTAGCACGATTTGGTCCAAGT
GTGGCGCGATGCAACGCGTCCTTCGTTAGAGGGCTACAGTGACCACAGCA
CGAAGGGAACCACTGCGCTGTCTCGGCCCTCTCACATCACGGGCCCTCTT
TTTTCCAACATGTGCCGCTGACCTCACCGCTCTCCACATACATGGAGAAC
TCGCCTGCCACCAGGCAGATACAATGTCGTCGAGCATTTGCACCTTACCC
CTTTTTTTCTGGCACTATCCTCCTCTCCATAATCTTCCCTCTTCTTCTAC
CCCCCTTCCACACTTTCCCTATCTCCTTCCCCCTTTCCCTTTCTCCTTCC
CCCTTTTCTCCTGTCTTCCTCCCCTCTTCTCTCTATAAGCTTCCCTCCTT
CCCGTCTCTCTCCCTCCCCTTTATCTCCCCGCACCTCAACTCCCTTATTC
TTCGTCTCATACCTTCGAAATGGCTTTGATCCCTTCCTCCCTCTTCTCCC
TTCCTTCTGCCTTTTGCCTTAGCCTTCCTCCAAACGATGTCTCCTCACGT
TCTTCTATTCAAACCCTTCCCCCTTTTCCGCACCTTCCTGCCGCCTTCCC
CATGCTCTCTTTCTTCTTCATTTTCTATTTCCCTTATCCCCCTCTTCATT
TTTCCCTTTCTCTCCTGACCTTCCTTCCACGTTTTCCCTCATCTCTCTCC
GTTTCACGACTTCCTTGCCATCTGCTCTCCTTGTATATATTTCTCCTGCT
TTTGTGGAAATTCTGGACAATTGAGATCATTTTTGATATTCGAAATTCAA
TCCCAAAGCAATGCAGTCGTTAAAAGAACGCACTGTGTCCTCTCCCCCCT
TCTCATCGTCCTCATCCCTTTCTCCGTCACATGCCAGCCGTGAGTGCATG
CATTGCGCATCCCCCCCACCGAACCCGCACACGTCCACAATTTTGTACAC
AGAATATTCAGAATCATTTGTGCTCGCCTGCTCTCTCTGCTTCTTCCTTC
CTCCTCGTCCCAAATTGTGCTTCATTCAGATACTGAAGGCTCTATACAGC
AGCCGCCGTATGGATCAAAGCAATGCACTCATTTCCAACAATATATTTCA
ACTCACACCACCACAGCAAACACACGTGACACATCATGCGTAGCGCTTTT
TCTCTCCTTGCCCTCGGCACCACGTTTGTCCTGACTGCGGCTCAGCCGAT
GGTGACCCTCACCTCCATCAAGGCTGTCGACGTGGCCAGGGAGAACAAGG
ACCAATGGAGTCTCAAGGGCTACGTCGACGACCCTACCGGGACGTATGTT
CCCTTGGTGGATGACATTGGCTTGAACGTGAGGCTTGTGGACTCGAACAA
CGTCAACATTAGTGCCGTGAACTTTGCCCCTAGTGAGTGCAACCCGCTCC
TCAACGATAAGGGAACCGTTTGCAAGGTTACGGGTGCCCGTTACACGCTG
AGGAAGATCAATAAGCTCCCCAAGAGCGCCATGATCTCGGCGCAGAAGAA
GCACAACAAGACCAGCAGCGAATCTTTCTATTACAAGCTTTCGGGCGTTT
TCCGCCGTCAGGAGTTCACGGCCACTGTGGCGACGCCTCTGACTGTTATC
TTCGCTGCGGGCAACGTTGGCACCCTTGCTGTCACCAACACGGACTGTAC
AGAGAAAGATGGAGCCAAATCCACCAGGTACCTCTGCACGCCTGGTGCCT
CTACCCCCGCCCCTACCGGGCTCCCATAAACGGCCTTATAACGGATCATA
AGCATGACAAGTTTCATGTCTCGCTCCCGTTTCTAATGTGTTTTTGATGA
TAAGGTTCTGTATGCCCCTTGTCAGTCTGGAAGCTCCACCTTCCATACGT
GATGTGTCGACTTGTCTAGGCGTGTGACAATGCCTTTGTTCGTGTTTGTG
TTGTGTTGTGTATGTGTTTTTATTTGTTGCTCGTGTGCCACTTATGTTGA
GAGCTTCAATTGCCTCATACGTCCACCAGAGGCTTCTTTGAAGCCTGCAT
GCGGGAGGAGGAAAACATGGCTCAATTTTCCGTGTAGACAGGTAACTAAA
GTCCAAAATGTAGCCGGTGAATCAAGATAGTGCAGACGCT
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protein sequence of NO21G00170.1

>NO21G00170.1-protein ID=NO21G00170.1-protein|Name=NO21G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDP
TGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTG
ARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTATVAT
PLTVIFAAGNVGTLAVTNTDCTEKDGAKSTRYLCTPGASTPAPTGLP*
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Synonyms
Publications