NO21G00170.1, NO21G00170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00170.1
Unique NameNO21G00170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2340
Alignment locationchr21:54210..56549 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:54210..56549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00170.1 vs.
Match: XP_005855033.1 (hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526]; EKU21331.1 hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 125.2 bits (313), Expect = 2.300e-25
Identity = 79/200 (39.50%), Postives = 116/200 (58.00%), Query Frame = 0 
Query:    1 MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTA-TVATPLTVIFAAGNVG-TLAVTNTDCTE--KDGAKSTRYLCTPGAS--TPAPT 195
            MR AF LLALG T V+TA Q + TL ++K +D ++  +DQWS+KG +DDPT T VPL+   GL V L D     + +  FA S+C    N +G  CK  GAR ++ K+++ PK A +    +++  +S   YY  SG+FRR +F    +  PLTV+    ++    +   + C+E  K   ++TR  CTPG +  TPAPT
Sbjct:    1 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSI-KMSRRPKGANV----QNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPVTPAPT 195
The following BLAST results are available for this feature:
BLAST of NO21G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855033.12.300e-2539.50hypothetical protein NGA_0415500 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00170NO21G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00170.1NO21G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00170.1.cds1NO21G00170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00170.1 ID=NO21G00170.1|Name=NO21G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp
GGCCAACCGAAAAACAAAAGGAAACCGACCGCCAACCGGAAATCACAAAA
ACCAAAAAAAAACAAAAAAAACAAAAAACCAGAGAAATAAAAACTTCCAA
AATGCGCTTTTGCTCTTCCGTCTTCCTGTTGTGTGTGATAATTCTTTGTA
CATTGTTCTTGTCACATGCACACACATGTAATCGACCAGAGGCTGGCCCC
AATCACTGATTGGTCTCTACCTGAGGGACTCTGAGCGCCCCATGGATTCC
CTAGCTTCTTTGCGCTATGCTATCCTATGGTAGCACGATTTGGTCCAAGT
GTGGCGCGATGCAACGCGTCCTTCGTTAGAGGGCTACAGTGACCACAGCA
CGAAGGGAACCACTGCGCTGTCTCGGCCCTCTCACATCACGGGCCCTCTT
TTTTCCAACATGTGCCGCTGACCTCACCGCTCTCCACATACATGGAGAAC
TCGCCTGCCACCAGGCAGATACAATGTCGTCGAGCATTTGCACCTTACCC
CTTTTTTTCTGGCACTATCCTCCTCTCCATAATCTTCCCTCTTCTTCTAC
CCCCCTTCCACACTTTCCCTATCTCCTTCCCCCTTTCCCTTTCTCCTTCC
CCCTTTTCTCCTGTCTTCCTCCCCTCTTCTCTCTATAAGCTTCCCTCCTT
CCCGTCTCTCTCCCTCCCCTTTATCTCCCCGCACCTCAACTCCCTTATTC
TTCGTCTCATACCTTCGAAATGGCTTTGATCCCTTCCTCCCTCTTCTCCC
TTCCTTCTGCCTTTTGCCTTAGCCTTCCTCCAAACGATGTCTCCTCACGT
TCTTCTATTCAAACCCTTCCCCCTTTTCCGCACCTTCCTGCCGCCTTCCC
CATGCTCTCTTTCTTCTTCATTTTCTATTTCCCTTATCCCCCTCTTCATT
TTTCCCTTTCTCTCCTGACCTTCCTTCCACGTTTTCCCTCATCTCTCTCC
GTTTCACGACTTCCTTGCCATCTGCTCTCCTTGTATATATTTCTCCTGCT
TTTGTGGAAATTCTGGACAATTGAGATCATTTTTGATATTCGAAATTCAA
TCCCAAAGCAATGCAGTCGTTAAAAGAACGCACTGTGTCCTCTCCCCCCT
TCTCATCGTCCTCATCCCTTTCTCCGTCACATGCCAGCCGTGAGTGCATG
CATTGCGCATCCCCCCCACCGAACCCGCACACGTCCACAATTTTGTACAC
AGAATATTCAGAATCATTTGTGCTCGCCTGCTCTCTCTGCTTCTTCCTTC
CTCCTCGTCCCAAATTGTGCTTCATTCAGATACTGAAGGCTCTATACAGC
AGCCGCCGTATGGATCAAAGCAATGCACTCATTTCCAACAATATATTTCA
ACTCACACCACCACAGCAAACACACGTGACACATCATGCGTAGCGCTTTT
TCTCTCCTTGCCCTCGGCACCACGTTTGTCCTGACTGCGGCTCAGCCGAT
GGTGACCCTCACCTCCATCAAGGCTGTCGACGTGGCCAGGGAGAACAAGG
ACCAATGGAGTCTCAAGGGCTACGTCGACGACCCTACCGGGACGTATGTT
CCCTTGGTGGATGACATTGGCTTGAACGTGAGGCTTGTGGACTCGAACAA
CGTCAACATTAGTGCCGTGAACTTTGCCCCTAGTGAGTGCAACCCGCTCC
TCAACGATAAGGGAACCGTTTGCAAGGTTACGGGTGCCCGTTACACGCTG
AGGAAGATCAATAAGCTCCCCAAGAGCGCCATGATCTCGGCGCAGAAGAA
GCACAACAAGACCAGCAGCGAATCTTTCTATTACAAGCTTTCGGGCGTTT
TCCGCCGTCAGGAGTTCACGGCCACTGTGGCGACGCCTCTGACTGTTATC
TTCGCTGCGGGCAACGTTGGCACCCTTGCTGTCACCAACACGGACTGTAC
AGAGAAAGATGGAGCCAAATCCACCAGGTACCTCTGCACGCCTGGTGCCT
CTACCCCCGCCCCTACCGGGCTCCCATAAACGGCCTTATAACGGATCATA
AGCATGACAAGTTTCATGTCTCGCTCCCGTTTCTAATGTGTTTTTGATGA
TAAGGTTCTGTATGCCCCTTGTCAGTCTGGAAGCTCCACCTTCCATACGT
GATGTGTCGACTTGTCTAGGCGTGTGACAATGCCTTTGTTCGTGTTTGTG
TTGTGTTGTGTATGTGTTTTTATTTGTTGCTCGTGTGCCACTTATGTTGA
GAGCTTCAATTGCCTCATACGTCCACCAGAGGCTTCTTTGAAGCCTGCAT
GCGGGAGGAGGAAAACATGGCTCAATTTTCCGTGTAGACAGGTAACTAAA
GTCCAAAATGTAGCCGGTGAATCAAGATAGTGCAGACGCT
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protein sequence of NO21G00170.1

>NO21G00170.1-protein ID=NO21G00170.1-protein|Name=NO21G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDP
TGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTG
ARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTATVAT
PLTVIFAAGNVGTLAVTNTDCTEKDGAKSTRYLCTPGASTPAPTGLP*
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mRNA from alignment at chr21:54210..56549+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00170.1 ID=NO21G00170.1|Name=NO21G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp|location=Sequence derived from alignment at chr21:54210..56549+ (Nannochloropsis oceanica)
GGCCAACCGAAAAACAAAAGGAAACCGACCGCCAACCGGAAATCACAAAA
ACCAAAAAAAAACAAAAAAAACAAAAAACCAGAGAAATAAAAACTTCCAA
AATGCGCTTTTGCTCTTCCGTCTTCCTGTTGTGTGTGATAATTCTTTGTA
CATTGTTCTTGTCACATGCACACACATGTAATCGACCAGAGGCTGGCCCC
AATCACTGATTGGTCTCTACCTGAGGGACTCTGAGCGCCCCATGGATTCC
CTAGCTTCTTTGCGCTATGCTATCCTATGGTAGCACGATTTGGTCCAAGT
GTGGCGCGATGCAACGCGTCCTTCGTTAGAGGGCTACAGTGACCACAGCA
CGAAGGGAACCACTGCGCTGTCTCGGCCCTCTCACATCACGGGCCCTCTT
TTTTCCAACATGTGCCGCTGACCTCACCGCTCTCCACATACATGGAGAAC
TCGCCTGCCACCAGGCAGATACAATGTCGTCGAGCATTTGCACCTTACCC
CTTTTTTTCTGGCACTATCCTCCTCTCCATAATCTTCCCTCTTCTTCTAC
CCCCCTTCCACACTTTCCCTATCTCCTTCCCCCTTTCCCTTTCTCCTTCC
CCCTTTTCTCCTGTCTTCCTCCCCTCTTCTCTCTATAAGCTTCCCTCCTT
CCCGTCTCTCTCCCTCCCCTTTATCTCCCCGCACCTCAACTCCCTTATTC
TTCGTCTCATACCTTCGAAATGGCTTTGATCCCTTCCTCCCTCTTCTCCC
TTCCTTCTGCCTTTTGCCTTAGCCTTCCTCCAAACGATGTCTCCTCACGT
TCTTCTATTCAAACCCTTCCCCCTTTTCCGCACCTTCCTGCCGCCTTCCC
CATGCTCTCTTTCTTCTTCATTTTCTATTTCCCTTATCCCCCTCTTCATT
TTTCCCTTTCTCTCCTGACCTTCCTTCCACGTTTTCCCTCATCTCTCTCC
GTTTCACGACTTCCTTGCCATCTGCTCTCCTTGTATATATTTCTCCTGCT
TTTGTGGAAATTCTGGACAATTGAGATCATTTTTGATATTCGAAATTCAA
TCCCAAAGCAATGCAGTCGTTAAAAGAACGCACTGTGTCCTCTCCCCCCT
TCTCATCGTCCTCATCCCTTTCTCCGTCACATGCCAGCCGTGAGTGCATG
CATTGCGCATCCCCCCCACCGAACCCGCACACGTCCACAATTTTGTACAC
AGAATATTCAGAATCATTTGTGCTCGCCTGCTCTCTCTGCTTCTTCCTTC
CTCCTCGTCCCAAATTGTGCTTCATTCAGATACTGAAGGCTCTATACAGC
AGCCGCCGTATGGATCAAAGCAATGCACTCATTTCCAACAATATATTTCA
ACTCACACCACCACAGCAAACACACGTGACACATCATGCGTAGCGCTTTT
TCTCTCCTTGCCCTCGGCACCACGTTTGTCCTGACTGCGGCTCAGCCGAT
GGTGACCCTCACCTCCATCAAGGCTGTCGACGTGGCCAGGGAGAACAAGG
ACCAATGGAGTCTCAAGGGCTACGTCGACGACCCTACCGGGACGTATGTT
CCCTTGGTGGATGACATTGGCTTGAACGTGAGGCTTGTGGACTCGAACAA
CGTCAACATTAGTGCCGTGAACTTTGCCCCTAGTGAGTGCAACCCGCTCC
TCAACGATAAGGGAACCGTTTGCAAGGTTACGGGTGCCCGTTACACGCTG
AGGAAGATCAATAAGCTCCCCAAGAGCGCCATGATCTCGGCGCAGAAGAA
GCACAACAAGACCAGCAGCGAATCTTTCTATTACAAGCTTTCGGGCGTTT
TCCGCCGTCAGGAGTTCACGGCCACTGTGGCGACGCCTCTGACTGTTATC
TTCGCTGCGGGCAACGTTGGCACCCTTGCTGTCACCAACACGGACTGTAC
AGAGAAAGATGGAGCCAAATCCACCAGGTACCTCTGCACGCCTGGTGCCT
CTACCCCCGCCCCTACCGGGCTCCCATAAACGGCCTTATAACGGATCATA
AGCATGACAAGTTTCATGTCTCGCTCCCGTTTCTAATGTGTTTTTGATGA
TAAGGTTCTGTATGCCCCTTGTCAGTCTGGAAGCTCCACCTTCCATACGT
GATGTGTCGACTTGTCTAGGCGTGTGACAATGCCTTTGTTCGTGTTTGTG
TTGTGTTGTGTATGTGTTTTTATTTGTTGCTCGTGTGCCACTTATGTTGA
GAGCTTCAATTGCCTCATACGTCCACCAGAGGCTTCTTTGAAGCCTGCAT
GCGGGAGGAGGAAAACATGGCTCAATTTTCCGTGTAGACAGGTAACTAAA
GTCCAAAATGTAGCCGGTGAATCAAGATAGTGCAGACGCT
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Coding sequence (CDS) from alignment at chr21:54210..56549+

>NO21G00170.1 ID=NO21G00170.1|Name=NO21G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr21:54210..56549+ (Nannochloropsis oceanica)
ATGCGTAGCGCTTTTTCTCTCCTTGCCCTCGGCACCACGTTTGTCCTGAC
TGCGGCTCAGCCGATGGTGACCCTCACCTCCATCAAGGCTGTCGACGTGG
CCAGGGAGAACAAGGACCAATGGAGTCTCAAGGGCTACGTCGACGACCCT
ACCGGGACGTATGTTCCCTTGGTGGATGACATTGGCTTGAACGTGAGGCT
TGTGGACTCGAACAACGTCAACATTAGTGCCGTGAACTTTGCCCCTAGTG
AGTGCAACCCGCTCCTCAACGATAAGGGAACCGTTTGCAAGGTTACGGGT
GCCCGTTACACGCTGAGGAAGATCAATAAGCTCCCCAAGAGCGCCATGAT
CTCGGCGCAGAAGAAGCACAACAAGACCAGCAGCGAATCTTTCTATTACA
AGCTTTCGGGCGTTTTCCGCCGTCAGGAGTTCACGGCCACTGTGGCGACG
CCTCTGACTGTTATCTTCGCTGCGGGCAACGTTGGCACCCTTGCTGTCAC
CAACACGGACTGTACAGAGAAAGATGGAGCCAAATCCACCAGGTACCTCT
GCACGCCTGGTGCCTCTACCCCCGCCCCTACCGGGCTCCCATAA
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Synonyms
Publications