NO21G00160, NO21G00160 (gene) Nannochloropsis oceanica

Overview
NameNO21G00160
Unique NameNO21G00160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2063
Alignment locationchr21:51334..53396 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:51334..53396 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO21G00160 vs. NCBI_GenBank
Match: EWM30036.1 (hypothetical protein Naga_100179g1 [Nannochloropsis gaditana])

HSP 1 Score: 126.7 bits (317), Expect = 1.400e-25
Identity = 79/202 (39.11%), Postives = 117/202 (57.92%), Query Frame = 0
Query:    1 MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTA-TVATPLTVIFAAGNVG-TLAVTNTDCTE--KDGAKSTRYLCTPGAPTPAPTGILL 199
            MR AF LLALG T V+TA Q + TL ++K +D ++  +DQWS+KG +DDPT T VPL+   GL V L D     + +  FA S+C    N +G  CK  GAR ++ K+++ PK A +    +++  +S   YY  SG+FRR +F    +  PLTV+    ++    +   + C+E  K   ++TR  CTPG PTP   G++L
Sbjct:   20 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSI-KMSRRPKGAYV----QNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPG-PTPLTRGLIL 215          
BLAST of NO21G00160 vs. NCBI_GenBank
Match: XP_005855033.1 (hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526] >EKU21331.1 hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 124.4 bits (311), Expect = 7.100e-25
Identity = 79/200 (39.50%), Postives = 115/200 (57.50%), Query Frame = 0
Query:    1 MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTA-TVATPLTVIFAAGNVG-TLAVTNTDCTE--KDGAKSTRYLCTPGAP--TPAPT 195
            MR AF LLALG T V+TA Q + TL ++K +D ++  +DQWS+KG +DDPT T VPL+   GL V L D     + +  FA S+C    N +G  CK  GAR ++ K+++ PK A +    +++  +S   YY  SG+FRR +F    +  PLTV+    ++    +   + C+E  K   ++TR  CTPG    TPAPT
Sbjct:    1 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSI-KMSRRPKGANV----QNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPVTPAPT 195          
BLAST of NO21G00160 vs. NCBI_GenBank
Match: EWM24986.1 (Cupin, RmlC-type [Nannochloropsis gaditana])

HSP 1 Score: 120.9 bits (302), Expect = 7.800e-24
Identity = 58/80 (72.50%), Postives = 62/80 (77.50%), Query Frame = 0
Query:  195 GILLGDCITESNTKTLTPILWSLLNLLPKKTHQPPHRHNSVALDLAVHAAPDGVYTLMGPELDEDGWVKHPIRLDWKRAA 275
            GILLG+ +TE+NT TLT  LWSLLNLLP    Q PHRHNSVALDL V AAP G YTLMGPELD DGWVK PIRL+W   A
Sbjct:  202 GILLGNRMTEANTLTLTHTLWSLLNLLPAGQKQRPHRHNSVALDLCVSAAPQGTYTLMGPELDADGWVKDPIRLEWASGA 281          
BLAST of NO21G00160 vs. NCBI_GenBank
Match: EWM22005.1 (hypothetical protein Naga_100353g3 [Nannochloropsis gaditana])

HSP 1 Score: 117.1 bits (292), Expect = 1.100e-22
Identity = 82/197 (41.62%), Postives = 109/197 (55.33%), Query Frame = 0
Query:    1 MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTA-TVATPLTVIFAAGNVGTLAVTNTDCTEKDGAKSTRYLCTPG--APTPAPT 195
            MR   SLLALG T  LT  Q M++L SIK  +  R NKD+WS+KG ++DPT   V  +   GL V L+D+ +  +   +FA  +C    N KG  CK+ GAR ++R  +K PK   +   K +N T     YY +SG FR  +     V +PLT       VGTL+ T TDC+ + GA +TR  C PG   PT APT
Sbjct:   68 MRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIR-ASKPPKGVKV---KTYNSTGG---YYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVR-GAGTTRTTCVPGPIIPTNAPT 255          
BLAST of NO21G00160 vs. NCBI_GenBank
Match: EWM30045.1 (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 116.3 bits (290), Expect = 1.900e-22
Identity = 79/199 (39.70%), Postives = 115/199 (57.79%), Query Frame = 0
Query:    1 MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTA-TVATPLTVIFAAGNVGTLAVTNTDCTE--KDGAKSTRYLCTPG-AP-TPAPT 195
            MR   SLLALG T V+TA Q   TL ++K  + ++  +DQWS+KG +D+P    VP +  +GL V L+D +   +++  FA + C  L N +G  CK  GAR ++++  + PK A +    K + ++S   YY  SG+FRR +F    V TPLTV    G+    A+ +T C+E  K   + T+  CTPG AP TPAPT
Sbjct:    1 MRRILSLLALGVTLVMTAGQEF-TLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRR-PKGAKV----KSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVST-CSERTKGAGRITKITCTPGPAPVTPAPT 192          
BLAST of NO21G00160 vs. NCBI_GenBank
Match: EWM20135.1 (hypothetical protein Naga_101626g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 110.9 bits (276), Expect = 8.100e-21
Identity = 74/189 (39.15%), Postives = 106/189 (56.08%), Query Frame = 0
Query:    1 MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTA-TVATPLTVIFAAGNVGTLAVTNTDCTE--KDGAKSTRYLCTP 187
            MR   SLLALG T V+TA Q   TL +IK     +  +DQWS+KG +D+PT   VP++   GL V L+D++   +++  FA + C  L N +G  CK  GAR  +++  + PK+A +    K +  +S   YY  SG+FRR +F   TV TPLTV    G     A+ +T C+E  K   + T+  CTP
Sbjct:    1 MRCILSLLALGITLVMTAGQEF-TLKNIKVAGRFKTARDQWSMKGNLDNPTMNVVPVIGQSGLTVNLLDASLSPLASAAFAATNCKLLRNARGVSCKSMGARVYIKRTRR-PKAAKV----KSSSYNSTGGYYAASGMFRRLQFLQDTVVTPLTVQLVVGTTTLPAIVST-CSERTKSAGRITKITCTP 182          
BLAST of NO21G00160 vs. NCBI_GenBank
Match: EWM22002.1 (hypothetical protein Naga_100353g5 [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 2.400e-20
Identity = 78/193 (40.41%), Postives = 103/193 (53.37%), Query Frame = 0
Query:    1 MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTA-TVATPLTVIFAAGNVGTLAVTNTDCTEKDGAKSTRYLCTPGAPTPA 193
            MR   SLLALG T  LT  Q M++L SIK  +  + NKD+WS+K +++DPT   V  +   GL V L+D+ +  +    FA  +C    N KG  CK+ GAR ++R  +K PK       K HN T     YY +SG FRR +     V  PLT       VGTL+ T T C+ K G K+ +  C PG PT A
Sbjct:   80 MRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIR-ASKPPK----GVGKSHNSTGG---YYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVPG-PTAA 261          
BLAST of NO21G00160 vs. NCBI_GenBank
Match: EWM22004.1 (hypothetical protein Naga_100353g6 [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 2.400e-20
Identity = 78/193 (40.41%), Postives = 103/193 (53.37%), Query Frame = 0
Query:    1 MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTA-TVATPLTVIFAAGNVGTLAVTNTDCTEKDGAKSTRYLCTPGAPTPA 193
            MR   SLLALG T  LT  Q M++L SIK  +  + NKD+WS+K +++DPT   V  +   GL V L+D+ +  +    FA  +C    N KG  CK+ GAR ++R  +K PK       K HN T     YY +SG FRR +     V  PLT       VGTL+ T T C+ K G K+ +  C PG PT A
Sbjct:   11 MRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIR-ASKPPK----GVGKSHNSTGG---YYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVPG-PTAA 192          
BLAST of NO21G00160 vs. NCBI_GenBank
Match: XP_024371915.1 (uncharacterized protein LOC112280547 isoform X2 [Physcomitrella patens] >PNR58149.1 hypothetical protein PHYPA_005144 [Physcomitrella patens])

HSP 1 Score: 105.5 bits (262), Expect = 3.400e-19
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:  175 DGAKSTRYLCTPGAPTPAPTGILLGDCITESNTKTLTPILWSLLNLLPKKTHQPPHRHNSVALDLAVHAAPDGVYTLMGPELDEDGWVKHPIRLDWKRAA 275
            D  ++ R+   PGA      GILLG+  T   TKTL+ +LWSLLN+LP    Q PHRHNSVALDLAV AAP G YTLMG ELD +GWVK PIR+DW   A
Sbjct:  197 DNVENVRH--EPGAKHRNRLGILLGNEST-PETKTLSHVLWSLLNVLPAGEVQRPHRHNSVALDLAVRAAP-GTYTLMGKELDSEGWVKDPIRVDWTTGA 292          
BLAST of NO21G00160 vs. NCBI_GenBank
Match: XP_005852576.1 (hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526] >EKU23255.1 hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.5 bits (262), Expect = 3.400e-19
Identity = 74/188 (39.36%), Postives = 100/188 (53.19%), Query Frame = 0
Query:    1 MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDPTGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTGARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTA-TVATPLTVIFAAGNVGTLAVTNTDCTEKDGAKSTRYLCTPG 188
            MR   SLLALG T  LT  Q M++L SIK  +  + NKD+WS+KG+++DPT   V  +   GL V L+D     +   +FA  +C    + KG  CK+ GAR ++R  +K PK       K HN T     Y+ +SG FRR +     V  PLT       VGTL+ T T C+ K G K+ +  C PG
Sbjct:    1 MRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTQMNKDKWSMKGHLEDPTLAVVSGIGTNGLTVTLLDMAADTLDTASFAAGDCMVRKSSKGARCKMMGARVSIR-ASKPPK----GVGKSHNSTGG---YFSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVPG 178          
The following BLAST results are available for this feature:
BLAST of NO21G00160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30036.11.400e-2539.11hypothetical protein Naga_100179g1 [Nannochloropsi... [more]
XP_005855033.17.100e-2539.50hypothetical protein NGA_0415500 [Nannochloropsis ... [more]
EWM24986.17.800e-2472.50Cupin, RmlC-type [Nannochloropsis gaditana][more]
EWM22005.11.100e-2241.62hypothetical protein Naga_100353g3 [Nannochloropsi... [more]
EWM30045.11.900e-2239.70hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
EWM20135.18.100e-2139.15hypothetical protein Naga_101626g1, partial [Nanno... [more]
EWM22002.12.400e-2040.41hypothetical protein Naga_100353g5 [Nannochloropsi... [more]
EWM22004.12.400e-2040.41hypothetical protein Naga_100353g6 [Nannochloropsi... [more]
XP_024371915.13.400e-1959.00uncharacterized protein LOC112280547 isoform X2 [P... [more]
XP_005852576.13.400e-1939.36hypothetical protein NGA_0721300 [Nannochloropsis ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR093ncniR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR100ngnoR100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00160.1NO21G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613024gene_11030Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|606269gene_9518Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00160.1NO21G00160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00160 ID=NO21G00160|Name=NO21G00160|organism=Nannochloropsis oceanica|type=gene|length=2063bp
ATGCGTAGCGCTTTTTCTCTCCTTGCCCTCGGCACCACGTTTGTCCTGAC
TGCGGCTCAGCCGATGGTGACCCTCACCTCCATCAAGGCTGTCGACGTGG
CCAGGGAGAACAAGGACCAATGGAGTCTCAAGGGCTACGTCGACGACCCT
ACCGGGACGTATGTTCCCTTGGTGGATGACATTGGCTTGAACGTGAGGCT
TGTGGACTCGAACAACGTCAACATTAGTGCCGTGAACTTTGCCCCTAGTG
AGTGCAACCCGCTCCTCAACGATAAGGGAACCGTTTGCAAGGTTACGGGT
GCCCGTTACACGCTGAGGAAGATCAATAAGCTCCCCAAGAGCGCCATGAT
CTCGGCGCAGAAGAAGCACAACAAGACCAGCAGCGAATCTTTCTATTACA
AGCTTTCGGGCGTTTTCCGCCGTCAGGAGTTCACGGCCACTGTGGCGACG
CCTCTGACTGTTATCTTCGCTGCGGGCAACGTTGGCACCCTTGCTGTCAC
CAACACGGACTGTACAGAGAAAGATGGAGCCAAATCCACCAGGTACCTCT
GCACGCCCGGTGCCCCTACTCCCGCCCCTACCGgtggcgggaaaccataa
acggccttacaacggatcataaccatgacaagtttcatgtctcgctcccg
tctctaatgtgtttatgatgataaggttctgtatgccccttgtcagtctg
gaagctccaccttccatacgtgatgtgtcgacttgtctaggcgtgtgaca
atgcctttgttcgtgtttgtgttgtgttgtgtatgtgtttttatttgttg
ctcgtgtgccacttatgttgagagcttcaattgcctcatacgtctacaag
aggcttctttgaagcctgcatgcgggaggaggaaaacatggctcaatttt
ccgtgtagatctttaagacaggtaactaaagtccaaaatgtagccggtga
atcaagatagtgcaaacgcttctatcattccttttttttcccccatgctt
cttcttctttgtctttgtcttcgatttcgtctttttttcctcctccaccc
ccctcttctccagGTATCCTTTTGGGGGACTGCATCACGGAGAGCAACAC
CAAGACCCTCACGCCCATCCTCTGGTCACTCCTCAACCTTCTCCCCAAGA
AGACGCATCAGCCCCCCCACCGgtacgtcctccctccctccctccctcca
atgggattcatgaacattctcctcccctccctttcttcctccgtgcccac
cggccacacgccctccctctcttccacctcgtcctttgacttactctccc
tctctccctccctccttccctccctccctccctccctactgccagTCACA
ACTCCGTCGCCCTGGACCTGGCCGTCCACGCTGCCCCCGATGGCGTCTAC
ACTCTCATGgtccgtaccctcctccctccctccctcccatcctccctcgc
tcgccgtcttcctttcttcctctttcgtacaaaccgtcttctcgaagtcc
ccctctttccctccttccctccttccctccctccctcctttcctccctcc
ttccgcctactttcacgccatccgctgactctgcctcccttcctccctcc
cttccttcctccctcctccagGGTCCTGAGCTAGACGAGGACGGTTGGGT
GAAACATCCGATTCGTCTGGACTGGAAAAGGgtagggagggagggaggga
gggatggatggagggatggatggatggatggatggaggccacacatttcg
gtctttcttcacattcaatgacccaacccttccctacctccatctctggt
tttccttgcagGCGGCTCCCTCATCACGCCCCCAGCTGATGACACTCTCA
CCACAACGACAGTTGTTATTTTATGTTTTTCTTCGTATTCTGGGGTGTGG
TCATATGGTAGTGTTTTTACCTTCTAGCTTGTTATTTTCTACATATTTGG
CACTAATGTGTGTGTGCATTGGTCTTGTGATGAAGGAGGACGATGCTGAA
AAATGGCGGTACCTTCATTTTTGCGGGCTGCTCTGCGGCTGTACCTGGCA
TTGGTACGACTGA
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protein sequence of NO21G00160.1

>NO21G00160.1-protein ID=NO21G00160.1-protein|Name=NO21G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MRSAFSLLALGTTFVLTAAQPMVTLTSIKAVDVARENKDQWSLKGYVDDP
TGTYVPLVDDIGLNVRLVDSNNVNISAVNFAPSECNPLLNDKGTVCKVTG
ARYTLRKINKLPKSAMISAQKKHNKTSSESFYYKLSGVFRRQEFTATVAT
PLTVIFAAGNVGTLAVTNTDCTEKDGAKSTRYLCTPGAPTPAPTGILLGD
CITESNTKTLTPILWSLLNLLPKKTHQPPHRHNSVALDLAVHAAPDGVYT
LMGPELDEDGWVKHPIRLDWKRAAPSSRPQLMTLSPQRQLLFYVFLRILG
CGHMVVFLPSSLLFSTYLALMCVCIGLVMKEDDAEKWRYLHFCGLLCGCT
WHWYD*
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Synonyms
Publications