NO20G02260, NO20G02260 (gene) Nannochloropsis oceanica

Overview
NameNO20G02260
Unique NameNO20G02260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1782
Alignment locationchr20:683309..685090 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:683309..685090 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO20G02260 vs. NCBI_GenBank
Match: XP_005852581.1 (hypothetical protein NGA_0718700 [Nannochloropsis gaditana CCMP526] >EKU23251.1 hypothetical protein NGA_0718700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 481.5 bits (1238), Expect = 2.700e-132
Identity = 248/375 (66.13%), Postives = 295/375 (78.67%), Query Frame = 0 
Query:    1 MAYKAIAASSLMLGIAQGHIFSNWNTRTATTANKIVEIPASGGTRPVAAFGIATGNYDAATTVDFKADATLSSGMYIKGYAVSKAKHDEFVAACPQTAGELVSVYEWGYGPCDAFMSSLK---TQATTFQAG-TTPKEAG-GSTVKAAFSLSEPLDGVYVLFENLMGQPVTFSNAEFSLENVAEPVKAGEDLVFPAATVHMSAAVVKLADETPTEKTMVSFKAQGTAVEGAKSTAMMVVNKEQMTPARLGCTFGFYFGWFKRNTAGQNVCKQADFTYTMDGDILKLTGVIKAVT----PQDLAGDILADPSITLFQGDADYTFEAEAHGADSIFVVIPNRLDTPISVEDLSVSYEAADLMSHLMEDPSTIWKSGP 367
            MA+KA+  SS +  +AQGHIFS+W++RT T+  ++VEIP SGG+RPV AFG+ATG Y A T VDFKADATL+ GMY+KG+A+S+AK+ EF  AC Q   +LVSVYEWGYG CD FM SLK     ATTF  G  TPK+ G GSTVKAAF L +  +G+YV+FENLMG PVTFSNAEFS+  VAEPV+AGEDLVFP ATVHMSAAVV LADE PTEKT V+F+A+ T  +G K TA+M+VNKEQM P RLGCTFGFYFGWFK++  GQNVCK ADFTYT+DGDIL L GVIKAVT    PQ LAGDI  DP+ TLFQGD DY F+AE HGADS+FVVIPNR DTP++VE L+V Y+AA+L+ HL ++   I  +GP
Sbjct:    1 MAFKAVIVSSFITSLAQGHIFSSWDSRTDTSIKEVVEIPPSGGSRPVGAFGVATGEYPATTQVDFKADATLAGGMYVKGFALSQAKYAEFRTACSQEGDKLVSVYEWGYGACDNFMGSLKEATDPATTFFVGQVTPKQDGTGSTVKAAFQLLDGGEGLYVVFENLMGGPVTFSNAEFSIAGVAEPVQAGEDLVFPPATVHMSAAVVPLADEVPTEKTTVTFRAKNT--DGGKQTALMLVNKEQMEPERLGCTFGFYFGWFKKHAPGQNVCKGADFTYTIDGDILTLKGVIKAVTPETAPQLLAGDIPVDPTSTLFQGDGDYAFDAEVHGADSMFVVIPNRRDTPVTVEGLTVKYQAANLVGHLAKESQKILDNGP 373
[Close]
BLAST of NO20G02260 vs. NCBI_GenBank
Match: EWM22010.1 (hypothetical protein Naga_100742g2 [Nannochloropsis gaditana])

HSP 1 Score: 481.5 bits (1238), Expect = 2.700e-132
Identity = 248/375 (66.13%), Postives = 295/375 (78.67%), Query Frame = 0 
Query:    1 MAYKAIAASSLMLGIAQGHIFSNWNTRTATTANKIVEIPASGGTRPVAAFGIATGNYDAATTVDFKADATLSSGMYIKGYAVSKAKHDEFVAACPQTAGELVSVYEWGYGPCDAFMSSLK---TQATTFQAG-TTPKEAG-GSTVKAAFSLSEPLDGVYVLFENLMGQPVTFSNAEFSLENVAEPVKAGEDLVFPAATVHMSAAVVKLADETPTEKTMVSFKAQGTAVEGAKSTAMMVVNKEQMTPARLGCTFGFYFGWFKRNTAGQNVCKQADFTYTMDGDILKLTGVIKAVT----PQDLAGDILADPSITLFQGDADYTFEAEAHGADSIFVVIPNRLDTPISVEDLSVSYEAADLMSHLMEDPSTIWKSGP 367
            MA+KA+  SS +  +AQGHIFS+W++RT T+  ++VEIP SGG+RPV AFG+ATG Y A T VDFKADATL+ GMY+KG+A+S+AK+ EF  AC Q   +LVSVYEWGYG CD FM SLK     ATTF  G  TPK+ G GSTVKAAF L +  +G+YV+FENLMG PVTFSNAEFS+  VAEPV+AGEDLVFP ATVHMSAAVV LADE PTEKT V+F+A+ T  +G K TA+M+VNKEQM P RLGCTFGFYFGWFK++  GQNVCK ADFTYT+DGDIL L GVIKAVT    PQ LAGDI  DP+ TLFQGD DY F+AE HGADS+FVVIPNR DTP++VE L+V Y+AA+L+ HL ++   I  +GP
Sbjct:    1 MAFKAVIVSSFITSLAQGHIFSSWDSRTDTSIKEVVEIPPSGGSRPVGAFGVATGEYPATTQVDFKADATLAGGMYVKGFALSQAKYAEFRTACSQEGDKLVSVYEWGYGACDNFMGSLKEAIDPATTFFVGQVTPKQDGTGSTVKAAFQLLDGGEGLYVVFENLMGGPVTFSNAEFSIAGVAEPVQAGEDLVFPPATVHMSAAVVPLADEVPTEKTTVTFRAKNT--DGGKQTALMLVNKEQMEPERLGCTFGFYFGWFKKHAPGQNVCKGADFTYTIDGDILTLKGVIKAVTPETAPQLLAGDIPVDPTSTLFQGDGDYAFDAEVHGADSMFVVIPNRRDTPVTVEGLTVKYQAANLVGHLAKESQKILDNGP 373
The following BLAST results are available for this feature:
BLAST of NO20G02260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852581.12.700e-13266.13hypothetical protein NGA_0718700 [Nannochloropsis ... [more]
EWM22010.12.700e-13266.13hypothetical protein Naga_100742g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02260.1NO20G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595083gene_6453Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02260.1NO20G02260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02260 ID=NO20G02260|Name=NO20G02260|organism=Nannochloropsis oceanica|type=gene|length=1782bp
ATGGCATATAAGGCCATTGCTGCTTCCTCCTTAATGTTAGGCATCGCCCA
GGGCCACATTTTCTCAAACTGGAACACCCGCACTGCCACGACCGCCAACA
AGATCGTGGAGATCCCTGCCTCGGGTGGGACGCGCCCCGTGGCCGCCTTT
GGCATTGCAACAGGCAATgtaagtactaaacaaatataatacaagggcac
tagccttcttttcatatgtgagttatgatggcaacgcggtcaaaggggga
agtgcgggcggagagaggcaaacgggaaggagggagggctgccatatcat
actttttggggggaaatggggggaaggcgaggagcgggaaaggggaggga
ggcgaatgggaacaaaggccaccaatgttgtgcagcacgataagtgatgc
tttctttcatttccatcaggggctcgcatgtgtgttctttcctgagaagc
gaattacgtaccgaaggagggcaggcatgattccccctcgctcttccgcc
ttatgtaacctagatttacccgcattctccctccctccttccctccctcc
taccttccttccttcaagTACGATGCTGCAACCACCGTGGATTTCAAAGC
GGATGCGACCTTGAGCAGTGGGATGTACATCAAGGGGTACGCCGTCTCCA
AGGCCAAGCACGACGAGTTCGTTGCTGCGTGCCCTCAGACCGCGGGCGAG
CTGGTCTCAGTCTATGAATGGGGTTATGGCCCATGTGACGCTTTCATGAG
CTCTCTCAAGACACAGGCCACGACCTTCCAGGCTGGGACGACACCGAAGG
AGGCAGGGGGGTCTACGGTCAAAGCGGCCTTCTCCCTTTCGGAGCCTTTG
GACGGGGTATACGTTCTGTTCGAGAATCTGATGGGCCAGCCTGTCACCTT
CTCCAACGCAGAATTCTCCCTTGAGAACGTTGCGGAGCCTGTCAAGGCAG
GAGAGGACTTGGTCTTCCCTGCTGCGACTGTGCACATGTCGGCAGCGGTG
GTGAAGCTGGCCGACGAGACGCCTACAGAGAAAACGATGGTGTCGTTCAA
GGCCCAAGGGACGGCCGTTGAGGGCGCCAAATCCACGGCGATGATGGTGG
TGAACAAGGAGCAGATGACCCCTGCACGCTTGGGATGCACCTTTGGGTTC
TACTTCGGCTGGTTCAAGAGGAACACGGCCGGACAAAACGTGTGCAAACA
GGCAGATTTTACCTACACCATGGACGGGGACATCCTCAAGCTGACGGGgt
aagcaagctttcctttcctccctcccctcctcccttccctcccttccttc
atttccctgttggtgtctagttgaccttactctttacaacgctttcccct
ccccctgtccccctcctatcccccttcttcctcagTGTGATCAAGGCCGT
TACCCCCCAGGATCTGGCGGGTGATATCCTTGCAGACCCTTCCATCACCC
TCTTCCAGGGCGATGCTGACTACACGTTTGAGGCGGAAGCCCATGGAGCG
GATAGTATATTCGTTGTTATCCCCAATAGGCTGGACACTCCGATTAGCGT
AGAGGATCTTTCTGTCTCTTACGAGGCTGCTGACCTTATGTCGCATTTGA
TGGAGGACCCGAGCACCATTTGGAAGAGTGGCCCGGTGGCGGGTGTGTGC
ATTGCGGCGCTTGTCGTGTTATTCTCCTGCATGGCAGCCGCATACTGCCT
GGGCAAGCGCAAGGCGGCACTGATGGTGAAGAAAGCGGAGGAGAAGGCGG
AGAGGAAGCAGCAGGGCAATGCCCTGGTTTAA
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protein sequence of NO20G02260.1

>NO20G02260.1-protein ID=NO20G02260.1-protein|Name=NO20G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MAYKAIAASSLMLGIAQGHIFSNWNTRTATTANKIVEIPASGGTRPVAAF
GIATGNYDAATTVDFKADATLSSGMYIKGYAVSKAKHDEFVAACPQTAGE
LVSVYEWGYGPCDAFMSSLKTQATTFQAGTTPKEAGGSTVKAAFSLSEPL
DGVYVLFENLMGQPVTFSNAEFSLENVAEPVKAGEDLVFPAATVHMSAAV
VKLADETPTEKTMVSFKAQGTAVEGAKSTAMMVVNKEQMTPARLGCTFGF
YFGWFKRNTAGQNVCKQADFTYTMDGDILKLTGVIKAVTPQDLAGDILAD
PSITLFQGDADYTFEAEAHGADSIFVVIPNRLDTPISVEDLSVSYEAADL
MSHLMEDPSTIWKSGPVAGVCIAALVVLFSCMAAAYCLGKRKAALMVKKA
EEKAERKQQGNALV*
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Synonyms
Publications