NO20G02150, NO20G02150 (gene) Nannochloropsis oceanica

Overview
NameNO20G02150
Unique NameNO20G02150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2432
Alignment locationchr20:641974..644405 +

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Properties
Property NameValue
DescriptionHeat shock protein hsp20
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:641974..644405 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Homology
BLAST of NO20G02150 vs. NCBI_GenBank
Match: EWM22022.1 (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 194.5 bits (493), Expect = 2.500e-46
Identity = 106/161 (65.84%), Postives = 115/161 (71.43%), Query Frame = 0
Query:    1 MALSRF---DPFGSMLTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAIVPNLSLDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKSETRKAIRV 159
            MALSR+   DP GS L ER                                Q +VP+L+LDVKEKNNEF+VAIDAPGMKKEDFDVTF+NNVLRVACERKEEKEEEDARWHISERRWGS SRSVRLPR A  + I AEYD+GVLKIHVPKTQ+SETRK IRV
Sbjct:    1 MALSRYWRDDPLGSNLIER---DPFADFFSTGGGWLTPSVGGALSTGTSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRKTIRV 158          
BLAST of NO20G02150 vs. NCBI_GenBank
Match: EWM28800.1 (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 96.3 bits (238), Expect = 9.300e-17
Identity = 42/106 (39.62%), Postives = 71/106 (66.98%), Query Frame = 0
Query:   53 PNLSLDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKSETRKAIRV 159
            P++ +D+ E + EF + +D PG KKED D++ ++++L V  ER+EE  E+   +H+ ERR G   RS+RLPR+A  ++++A+Y  GVL+I V K  +    K+I++
Sbjct:   33 PSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138          
BLAST of NO20G02150 vs. NCBI_GenBank
Match: OQY88376.1 (hypothetical protein B6D39_11330 [Anaerolineae bacterium UTCFX2])

HSP 1 Score: 94.7 bits (234), Expect = 2.700e-16
Identity = 41/106 (38.68%), Postives = 75/106 (70.75%), Query Frame = 0
Query:   49 QAIVPNLSLDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKSETRK 155
            Q +  NL+LDV E ++E+ V+   PG+  +D ++T+++NVL +  E +E++E ++ R+H+ ERR+GS SRS+ LP +   + IKA+Y  GVL +H+PK++++  ++
Sbjct:   36 QPMTWNLALDVAETDDEYRVSASLPGIDPDDLEITYDSNVLTIKGEMREDQEVKEERYHMRERRYGSFSRSISLPTSVKADKIKADYSKGVLTLHLPKSEEARPKR 141          
BLAST of NO20G02150 vs. NCBI_GenBank
Match: OGO72027.1 (heat-shock protein Hsp20 [Chloroflexi bacterium RBG_19FT_COMBO_56_12])

HSP 1 Score: 92.8 bits (229), Expect = 1.000e-15
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 0
Query:   54 NLSLDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKSETRK-AIR 158
            +L+LDV E  +EF V    PG+  +D ++TF NN L +  E KEEK+ E A +H+ ERR+GS +RS+ LP     + I+A Y+ GVLK+ +PK ++ + +K AIR
Sbjct:   39 DLALDVTESEDEFTVKASLPGINPDDLEITFTNNTLTIKGETKEEKDVEKAHYHLRERRYGSFARSITLPAGIETDKIQANYEVGVLKLRLPKAEEVKPKKIAIR 143          
BLAST of NO20G02150 vs. NCBI_GenBank
Match: PKL36239.1 (hypothetical protein CVV44_18670 [Spirochaetae bacterium HGW-Spirochaetae-1])

HSP 1 Score: 91.3 bits (225), Expect = 3.000e-15
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   57 LDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKSETRK 155
            LDV+E      V  + PG+ ++D DVT ENNVL +A E+K EKEE+D R+ ISERR+GS SRS+ LP     + IKA +  GVL + +P+ + ++ RK
Sbjct:   47 LDVQEDAKAITVKAEIPGIDEKDLDVTLENNVLTIAGEKKLEKEEKDKRYTISERRFGSFSRSISLPEGVSPDRIKAAFKNGVLSVTIPRDESAQPRK 144          
BLAST of NO20G02150 vs. NCBI_GenBank
Match: EPZ32380.1 (Alpha crystallin/Hsp20 domain-containing protein [Rozella allomycis CSF55])

HSP 1 Score: 90.9 bits (224), Expect = 3.900e-15
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   51 IVPNLSLDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKSETRKAIRV 159
            I P L+LD+ E +N + +  D PG+ KED  V  E+NVL V  ER+++++E +   H++ER +G   RSVRLP     E  +A  D GVLK+ V K++ +E RK I +
Sbjct:   40 IKPQLALDISELDNAYVIQADLPGIAKEDISVNLEDNVLTVETERRDQRDENNGTIHLTERFYGKMKRSVRLPAQVDPEKTEATLDNGVLKLRVAKSEAAEKRKCIAI 147          
BLAST of NO20G02150 vs. NCBI_GenBank
Match: WP_068874861.1 (MULTISPECIES: Hsp20/alpha crystallin family protein [Phenylobacterium])

HSP 1 Score: 90.9 bits (224), Expect = 3.900e-15
Identity = 41/102 (40.20%), Postives = 72/102 (70.59%), Query Frame = 0
Query:   57 LDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKSETRKAIRV 159
            LDVKE + E+ V+++ PG+ +ED +V  ++++L V  E+KEE+E E A  H++ERR+G   RS+RLP++   + +KA  D GVL+I +PK+++  +++ + V
Sbjct:   52 LDVKETDKEYRVSVELPGVAEEDIEVDVDDDLLTVRAEKKEEREVERADQHVTERRFGVLQRSIRLPQSVEAQAVKATLDNGVLRIAIPKSERQASKRRVPV 153          
BLAST of NO20G02150 vs. NCBI_GenBank
Match: WP_015947104.1 (Hsp20/alpha crystallin family protein [Desulfatibacillum alkenivorans] >ACL04030.1 heat shock protein Hsp20 [Desulfatibacillum alkenivorans AK-01])

HSP 1 Score: 89.7 bits (221), Expect = 8.700e-15
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 0
Query:   56 SLDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKSETRK 155
            SLDV E   E+ V  + PG+ KED D++    +L +  E+K+EK+EE   +H+ ER +GS SRS+R+P       +KAE   GVLKI +PKT++ +TRK
Sbjct:   42 SLDVAENEGEYVVTAEIPGLAKEDIDISLSEGLLTIKGEKKQEKKEETDTYHVVERSYGSFSRSLRVPNGVDLGGVKAETADGVLKIVLPKTEEEKTRK 140          
BLAST of NO20G02150 vs. NCBI_GenBank
Match: WP_028313452.1 (Hsp20/alpha crystallin family protein [Desulfatibacillum aliphaticivorans])

HSP 1 Score: 89.7 bits (221), Expect = 8.700e-15
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 0
Query:   56 SLDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKSETRK 155
            SLDV E   E+ V  + PG+ KED D++    +L +  E+K+EK+EE   +H+ ER +GS SRS+R+P       +KAE   GVLKI +PKT++ +TRK
Sbjct:   42 SLDVAENEGEYVVTAEIPGLAKEDIDISLSEGLLTIKGEKKQEKKEETDTYHVVERSYGSFSRSLRVPNGVDLGGVKAETADGVLKIVLPKTEEEKTRK 140          
BLAST of NO20G02150 vs. NCBI_GenBank
Match: OGP94089.1 (molecular chaperone [Deltaproteobacteria bacterium RBG_16_47_11])

HSP 1 Score: 89.7 bits (221), Expect = 8.700e-15
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 0
Query:   56 SLDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKSETRKAIRVE 160
            SLDV E  +   V  + PGM  +  D++F + +L V  E K+EKEE+D  +H+ ERR+GS SRSVRLP     + IKA Y  GVLKI +PK+++++ +K I+++
Sbjct:   45 SLDVSETKDNIMVKAELPGMDPKKIDISFADGILTVKGENKQEKEEKDENYHMVERRYGSFSRSVRLPHEVKSDKIKANYKEGVLKITLPKSEEAK-KKEIKIK 147          
The following BLAST results are available for this feature:
BLAST of NO20G02150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22022.12.500e-4665.84heat shock protein hsp20 [Nannochloropsis gaditana... [more]
EWM28800.19.300e-1739.62heat shock protein hsp20 [Nannochloropsis gaditana... [more]
OQY88376.12.700e-1638.68hypothetical protein B6D39_11330 [Anaerolineae bac... [more]
OGO72027.11.000e-1543.81heat-shock protein Hsp20 [Chloroflexi bacterium RB... [more]
PKL36239.13.000e-1546.94hypothetical protein CVV44_18670 [Spirochaetae bac... [more]
EPZ32380.13.900e-1541.67Alpha crystallin/Hsp20 domain-containing protein [... [more]
WP_068874861.13.900e-1540.20MULTISPECIES: Hsp20/alpha crystallin family protei... [more]
WP_015947104.18.700e-1544.44Hsp20/alpha crystallin family protein [Desulfatiba... [more]
WP_028313452.18.700e-1544.44Hsp20/alpha crystallin family protein [Desulfatiba... [more]
OGP94089.18.700e-1544.23molecular chaperone [Deltaproteobacteria bacterium... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02150.1NO20G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02150.1NO20G02150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02150 ID=NO20G02150|Name=NO20G02150|organism=Nannochloropsis oceanica|type=gene|length=2432bp
ACTCGGATTTGTTCCCTCGCTTCCCTTCCTTTGCCTTTGATTACTACTTT
GTGTCTTTTTTCCTTCTTTGTTATTGTCTTGTCAACCCGTCAACGAGAGT
TTATTTAGCGTCTCCATCGCCAAATCCTTGGCCTGACTTAGGACCTCTTG
AGTTTTCTCGGTGGGCGTGATAGACATCGACATGCTGCTGCTTGGAAGGG
GGGGCTTGCGTAACGGAGAGGCAAGTGGTTGATGTGGTGTGCTCTTGTAA
TGTTTGTCTTGCCTATTCTAAGGCGTATGTTCACTGCATCGCGTGGTGAA
GAGGGAGAAAGGGGGTATAGATTATGCGTGGTTTGTATGCTGTGGTTGCG
GAAAGAGGGGCTGGCATGATGAACAAATTGGGAGGGAACAAAGTAGGAAA
ACAGCGGGCAGAGCGGCTTGCTGCATGAGGTGCATCTGTTGGTTGCACAG
TGCGCCTACAAGCTTCTGCATCCTCAGTTCCAAGACAGGAGTCGAGCATC
AACACCACGTAACCAAACCTTCGCCAGTGCCAGCCCAGTCCGACGACACC
TGCCATCTATCTCCCTTGTTCGAGAAAGAGAAGCTACGCAGCAACTTGAA
GTTGGCCGTTGGCTAACATATGTTCTCCGCTTAGTTCCCTTTCTTTCCCA
AAGACGGTGAATGTTTTCCATTTCTCGAACCCCGGGCGAGTAGTATCCCG
TGCAGGCACTTTTCTTTGATGTTTGTTTGTTTGTTTGTTTGTTTGTTTGT
TTTGTGAGTGTATGGCATGGCTTTCTTTCACCCCCGGGACCTTTAATGAA
AGCACGACATAGTTTCTAATCTTTTTCCCCCAGACACCACATGACTGGGC
ACACATTTTCCCAGCCTTTTCCTTCTGTCCTGGTGTTAGTGCCTACTCTG
TGTATCTTTTGGACCAACCGAATGTTCTGTTCTACATTGTGCATGTGTAG
GCTGTCTCATTGACTTCGTGCTCCTCGCCACCCACACTCACGTCCTATAC
ATTGTACCATCGCGCCATAGCACCGCCCCTCGTTTGTTGGGCTTTTGTCT
CAAGACGGAGACAGACACGATTTTACTCCCACAAGCCATTATGGCTCCAG
AAATACCCCCACACCACACGGGTGTGTCTTCTCACTGGACGTCCACAGCA
CCCACGGGCGTCTCATTTCTTCCCTTTCCCTCCCTTTCATTTCCCGTGCA
CATGCCCATGCCCACCACAGCAGAACCCGAAGTCTCAAGACTCAAGAACA
AATCAACCAAGCCTACAACCCAACAACCATGGCTCTCTCTCGCTTCGACC
CCTTTGGATCCATGCTCACCGAGCGCGACCCGTTTGCCGACTTCTTTAGC
ACCGGAGgtaagtattcaggagggaaggaaggtggaagtggagaggaggc
ggcggtagacagggatggatggcgggaggaagatcttgaaactgaaggaa
gaggtcacctttctttctatagctgaccaggcaccggcctcacatccatc
ttccacctctcctacacccacctaccctctctttctacacagGCGGGTGG
CTTGCCCCCAGCGGCGTGGGAGGCGGGGCTTTGACCAGTGGTGGCATGGG
CCGCGGACAAGCTATCGTGCCCAACCTGAGCCTGGATGTGAAGGAGAAAA
ACAACGAGTTTGAGGTCGCTATTGATGCGCCGGGCATGAAGAAGGAAGgt
atgttggcgttgtggctgaagggagtggtgaggatgctgtcttgcctgtt
gtcttccttctgtcgttctttccttatatccttacacccaccctcgcttt
ctcccttccactctgcttccagACTTCGATGTGACGTTCGAGAACAACGT
TCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAAGGAGGAAGAGGACGCAC
GTTGGCACATTTCCGAGCGGCGCTGGGGCTCTTGCTCCCGCTCTGTTCGC
CTTCCTCGTGCCGCTGGCTGCGAGAACATCAAGGCCGAATACGACGCGGG
CGTTCTTAAGgtaaagaggatgagagggaagaaggcagagagggagggag
ggaagaagggagagagacaggatgaagcctttgattctcacaccactttc
gaattctttcctcccattccctctttccccccctctagATCCACGTGCCT
AAGACGCAGAAGAGCGAGACCCGCAAGGCCATTCGTGTGGAGTAGAGGAG
AGAGTGAGAACAGAGAGAGAGAGAGAGGAGAGAGAGAAAGAGAGAGGGAG
AAGGAGAGGGCGCAGGGGGAAGGGAGGAGAAAAATCTTCGAGTTCCCAGT
CCAGAGAGTGTGCAGTGTAAAACTCGTGGCCTAGATTTGTAAAACCCCCC
AAAAAGTGAAGGAAAATATTACATAGTCCTCCTTGTACGTAGTGAGCGAG
AAGAAAAGAGATCAACCGGGGAAGTAGAAGTA
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protein sequence of NO20G02150.1

>NO20G02150.1-protein ID=NO20G02150.1-protein|Name=NO20G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MALSRFDPFGSMLTERDPFADFFSTGGGWLAPSGVGGGALTSGGMGRGQA
IVPNLSLDVKEKNNEFEVAIDAPGMKKEDFDVTFENNVLRVACERKEEKE
EEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKS
ETRKAIRVE*
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Synonyms
Publications