NO20G01660, NO20G01660 (gene) Nannochloropsis oceanica

Overview
NameNO20G01660
Unique NameNO20G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3423
Alignment locationchr20:504717..508139 -

Link to JBrowse

Properties
Property NameValue
DescriptionCell division cycle 20, cofactor of APC complex
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:504717..508139 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0097027ubiquitin-protein transferase activator activity
GO:0010997anaphase-promoting complex binding
Vocabulary: Biological Process
TermDefinition
GO:1904668positive regulation of ubiquitin protein ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR033010Cdc20/Fizzy
Homology
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: CBJ28300.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.8 bits (312), Expect = 6.800e-25
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            SVDTGSQVC+L WS+HNKELVSSHGFS NQLCLWKYP+M KIKE +GHT+R LH+D SPDG TVVSAAA
Sbjct:  497 SVDTGSQVCSLQWSRHNKELVSSHGFSENQLCLWKYPNMLKIKEFRGHTSRVLHMDTSPDGSTVVSAAA 565
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: XP_009042268.1 (hypothetical protein AURANDRAFT_9551, partial [Aureococcus anophagefferens] >EGB03027.1 hypothetical protein AURANDRAFT_9551, partial [Aureococcus anophagefferens])

HSP 1 Score: 121.7 bits (304), Expect = 5.700e-24
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0 
Query:   25 VDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            VDTGSQVCALLWS+H+KE+VSSHGFS NQLCLW+YPSM K+ EL GHTAR LHL QSPDG TVVSAAA
Sbjct:    1 VDTGSQVCALLWSRHHKEIVSSHGFSQNQLCLWRYPSMTKLCELTGHTARVLHLAQSPDGETVVSAAA 68
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: XP_005844476.1 (hypothetical protein CHLNCDRAFT_26822 [Chlorella variabilis] >EFN52374.1 hypothetical protein CHLNCDRAFT_26822 [Chlorella variabilis])

HSP 1 Score: 119.4 bits (298), Expect = 2.800e-23
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            S+DTGSQVC+L W++H +EL+SSHGFS NQLCLWKYPSMAK+ EL GHT+R LHL QSPDG TVVSAAA
Sbjct:  315 SIDTGSQVCSLQWNRHERELLSSHGFSQNQLCLWKYPSMAKVAELTGHTSRVLHLAQSPDGTTVVSAAA 383
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: PRW32950.1 (cell division cycle 20 isoform B [Chlorella sorokiniana])

HSP 1 Score: 119.4 bits (298), Expect = 2.800e-23
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            S+DTGSQVC+L W++H +EL+SSHGFS NQLCLWKYPSMAK+ EL GHT+R LHL QSPDG TVVSAAA
Sbjct:  349 SIDTGSQVCSLQWNRHERELLSSHGFSQNQLCLWKYPSMAKVAELTGHTSRVLHLAQSPDGTTVVSAAA 417
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: PSC67172.1 (cell division cycle 20 [Micractinium conductrix])

HSP 1 Score: 119.4 bits (298), Expect = 2.800e-23
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            S+DTGSQVC+L W++H +EL+SSHGFS NQLCLWKYPSMAK+ EL GHT+R LHL QSPDG TVVSAAA
Sbjct:  339 SIDTGSQVCSLQWNRHERELLSSHGFSQNQLCLWKYPSMAKVAELTGHTSRVLHLAQSPDGTTVVSAAA 407
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: EJK63225.1 (hypothetical protein THAOC_16131 [Thalassiosira oceanica])

HSP 1 Score: 117.1 bits (292), Expect = 1.400e-22
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            S+DTGSQVC++LWS+H +EL SSHGFS NQL LWKYP+M KI+E KGHTAR LH+DQSPDG  VVSAAA
Sbjct:  458 SIDTGSQVCSILWSKHQRELCSSHGFSENQLILWKYPTMTKIQEFKGHTARVLHMDQSPDGGCVVSAAA 526
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: XP_005651189.1 (cell division cycle 20 [Coccomyxa subellipsoidea C-169] >EIE26645.1 cell division cycle 20 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 116.7 bits (291), Expect = 1.800e-22
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            S+DT SQVCAL WS+H KE++SSHGFS NQLCLWKYPSMAK+ E+ GHT+R LHL QSPDG TV SAAA
Sbjct:  324 SIDTHSQVCALQWSRHEKEILSSHGFSQNQLCLWKYPSMAKVAEMSGHTSRVLHLAQSPDGTTVCSAAA 392
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: XP_002293959.1 (hypothetical protein THAPSDRAFT_264191, partial [Thalassiosira pseudonana CCMP1335] >EED88968.1 hypothetical protein THAPSDRAFT_264191, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 115.9 bits (289), Expect = 3.100e-22
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            S+DTGSQVC+LLWS+H +E+ SSHGFS NQL LWKYP+M KI+E KGHTAR LH+DQSP+G  VVSAAA
Sbjct:  335 SIDTGSQVCSLLWSKHQREICSSHGFSENQLILWKYPTMTKIQEFKGHTARVLHMDQSPNGSCVVSAAA 403
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: XP_014154402.1 (hypothetical protein SARC_07142 [Sphaeroforma arctica JP610] >KNC80500.1 hypothetical protein SARC_07142 [Sphaeroforma arctica JP610])

HSP 1 Score: 115.2 bits (287), Expect = 5.400e-22
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 0 
Query:   21 QTPSVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAARPS-GFGRSWASHKTSKSNSWEKASCLLLSTPSAWLAPHLGHLV 136
            QT S+DT SQVC+LLWS+ ++ELVSSHGFS NQLC+WKYPS+AK+ EL GHT+R LH   SPDG TVVSAA   +  F + +A+  +S+S    K    L S+  +  + H G L+
Sbjct:  387 QTNSIDTKSQVCSLLWSKTHRELVSSHGFSQNQLCIWKYPSLAKVAELSGHTSRVLHTAMSPDGQTVVSAAGDETLRFWKCFAADSSSRSRLGGK-PLALKSSGGSTRSSHRGMLM 501
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: OAE25713.1 (hypothetical protein AXG93_4368s1730 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 115.2 bits (287), Expect = 5.400e-22
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAARPS-----GFGRSWASHKTS 108
            S+DT SQVCAL WSQH KE++SSHGFS  QLC+WKYPSM K+ EL GHTAR LHL QSPDG TVVSAAA  +      FG   +S KTS
Sbjct:  293 SIDTHSQVCALQWSQHQKEILSSHGFSQYQLCVWKYPSMVKMAELTGHTARVLHLAQSPDGTTVVSAAADETLRFWKVFGTPPSSKKTS 381
The following BLAST results are available for this feature:
BLAST of NO20G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ28300.16.800e-2581.16conserved unknown protein [Ectocarpus siliculosus][more]
XP_009042268.15.700e-2482.35hypothetical protein AURANDRAFT_9551, partial [Aur... [more]
XP_005844476.12.800e-2376.81hypothetical protein CHLNCDRAFT_26822 [Chlorella v... [more]
PRW32950.12.800e-2376.81cell division cycle 20 isoform B [Chlorella soroki... [more]
PSC67172.12.800e-2376.81cell division cycle 20 [Micractinium conductrix][more]
EJK63225.11.400e-2275.36hypothetical protein THAOC_16131 [Thalassiosira oc... [more]
XP_005651189.11.800e-2275.36cell division cycle 20 [Coccomyxa subellipsoidea C... [more]
XP_002293959.13.100e-2273.91hypothetical protein THAPSDRAFT_264191, partial [T... [more]
XP_014154402.15.400e-2252.59hypothetical protein SARC_07142 [Sphaeroforma arct... [more]
OAE25713.15.400e-2266.29hypothetical protein AXG93_4368s1730 [Marchantia p... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01660.1NO20G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01660.1NO20G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01660 ID=NO20G01660|Name=NO20G01660|organism=Nannochloropsis oceanica|type=gene|length=3423bp
ATGGCTTCCTACATGTTATCTTTATCATATAGACGTCGTACAGTGGTGCG
GAGAAGTTGTCAAACGCCCAGgtagcacaagcataggaaagcctcagtcg
cctcctcgcctcggggggagggactctcgatcgtaccatcaagttttgga
acacccacacaggctccctcctcaacagCGTGGACACTGGCAGTCAGgta
ggcaagccctccctccctccctccctttctccctcccttccatctttcct
tgcttcctcctctctctggccagcatgatccgcacacaaatcggtctgtg
aaagtagtcgtctatttattgccctcaatctaatccttatgtcattatca
ccacacaatgaatgatgagtctacttccacgcaataccaatcttattaca
ttacacgcggtaccaatctaataacattacataaaattacacgcggtgcc
aatctaatcacattacccttaatttcgcgacagGTCTGTGCCTTGCTCTG
GTCCCAGCACAACAAGGAGCTCGTCTCCTCCCACGGCTTCTCGGGAAACC
AACTCTGgtatgtcccctccctccctccctccctccctccctccctccct
tctcatgttaaaccctttttaatgcccctacacgatgatgtttgcttttt
ttgatcctccctccctccctccctccatccctccctccttccctcgctcc
ctcagCCTTTGGAAGTACCCCTCCATGGCCAAGATCAAGGAGCTCAAAGG
ACACACGGCGCGATTCCTCCACCTCGATCAGgtacagagcgccctccttc
cctccctacctcgctctctatatccctccctcttgtcctccctgcttctc
cccttttgtatgtcgcacaggcactggcgagtcctcgtaccgtcaacctc
ccctccctcccctccctcccttccctcctcgacctactgcagtccaacac
acttctgcccatactcactgactaaccctcctctctctccctccatccct
cagTCCCCGGACGGGATGACAGTTGTCTCAGCAGCCGCGAGACCCTCCGG
TTTTGGGAGATCATGGGCCAGCCACAAGgtagggagggagggagggaggg
agggagggagggagggaagaaaagccaggagggtgttgggcttgccatat
ccgctcactccactttttcatgtcgctatttatcattcatgtatttatcg
atctctcctttccaccatcttttcctcagACAAGCAAAAGCAATTCGTGG
GAAAAGGCATCTTGCCTCCTCCTCTCAACACCATCAGCATGGCTCGCTCC
TCATCTGGGACATTTGGTGGAATCAGATAAAGGGGGAAGGAGGGAGGGGG
GGGAGGAGGGGGGGAAGGAGGGGGGGAGGGCGAAAGAGCAAgtatgcaat
tatctctggaagcgtatgtgtgtgagagtgtctgtgttactttgtatagg
gtagaaggaaggttctctgatcttgctagcagcagcagctgctgctgcag
tataagtagtgctgcgacaaacatctctggcagcagtaccatgacagcag
agagagctgcagcggtaagagtgagagaagcagaaatagtcatgggcatt
ccaaatgaaatatgggaatcgggaaaggcaggtcaagtgttcccggactg
ataagtggtacgagaaaaacaaggcgtgtatatgtattgtctcacgggga
agatggaagtcgaggaagtttaggcaatcctcttgtctttagatcgagtt
ggaccacggatggacatggctttggatggaccgagatatcatatattttg
tatatatatgcttgtataatatataccaactatgtatatgttttgtttga
tcgacatttaggagcgtgtacatgaccatcggcatgtagcggcaaagatt
gcggatcggtggggagaggactatcatcaagtagagatcgaactcaatcg
tgcagaactaccctccaccttcctgtttccctgggcatgggtatggtaag
aagacaggttcatcatgatagggaagggatatgtgggagccagtgcaaca
tcagcaccagcatcaacaccggcagttggaggatgggaaggaggaggggg
aggaagacgagggaaaagaacccgggctacggaagcagcagcagccgccg
gcacacagctgaccatacgggtggcagtcgcagaagcacgagcccaggca
gctacaggaggaggaggaggagggggaacgagaggaatcccgactttact
ctctttacccggagaaaaggcaacacgagcacgtgcaaccattgccagaa
tccgtgcggcacttgcaagagggggagaagggaaagagaaagatagtgag
ggcgctcccacgaggaggaagagGGGGAGGGGAAGGAGGGGGAGGACGAG
GGGAAGGACGAGGGGAAAGAGGGGCAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGGTGGAGGAGGAGAAAGAGGGGGAGAAGGAGGAGGAGGAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAAGAAGGTGG
AAGAGGAAGAGGAATAAGAGGAAGAAGAAGACGAACAAGAAGGGGGAGGA
GAGGGAGAAGAAGAACAGGAAGAAGAGGAAGAAGAAGACGAACAATGAAG
AAGAAGGAGGAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAAAGGAGGAG
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGA
AGAAAAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGGGG
GTAGAGGAGGAGGGGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAGGGGA
AGGGGAGGAGGAGGAAAAGGCGGTGGAAGCAGAGGGGGAGGAGAAGCAGG
AGGAGGAGGAGGAGAAGGGGGAGGAGGAGGAAGGGAAAGGGGAGGAGGGG
GCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGGGAAGGAGGAGGCGGA
GGAGGAGGAGGAGGACGAGGCAGAGGAGGACGAGGCAGAGGAGGAGGAGG
AGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGTGAAC
AGCTCGTGTCCTGGGACGGCAATGGGGCACGTAACATCCTACGGGTGTAC
AGGAGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTTGGTCA
ACCGCGGCAAGATATGCGGACACTCTATGTGTAGCCTTCCCTCTGACCTC
CTTTTTAGTCCTCCTCCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCG
GGGACTTTGCCTGATCAAAAAATCTGTCAAAGTCGCTAGTAAAACTCGGA
CAATAATAAGGGATGAATATGCAACAAATTCTTGTGGCCCGATTGGGAGC
CAAGAATGGAAAAAACAAACAAA
back to top

protein sequence of NO20G01660.1

>NO20G01660.1-protein ID=NO20G01660.1-protein|Name=NO20G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MASYMLSLSYRRRTVVRRSCQTPSVDTGSQVCALLWSQHNKELVSSHGFS
GNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAARPSGFGRS
WASHKTSKSNSWEKASCLLLSTPSAWLAPHLGHLVESDKGGRREGGEEGG
KEGGRAKEQGEGKEGEDEGKDEGKEGQEEEEEEEEEEGGGGERGGEGGGG
GGEGGGGGGGEGGVGRRWKRKRNKRKKKTNKKGEEREKKNRKKRKKKTNN
EEEGGEEEEEEEEEEKEEEEEEEEEEEEEEEEEEEEKEEEEEEEEEEEEE
GGRGGGGGGGRRGGGGRGRGGGGKGGGSRGGGEAGGGGGEGGGGGRERGG
GGGGGGSRGGGGGEGGGGGGGGGRGRGGRGRGGGGGHGRAIRGLYWCDTC
EQLVSWDGNGARNILRVYRSMVRGEARPHDLRFGQPRQDMRTLYV*
back to top
Synonyms
Publications