NO20G00770, NO20G00770 (gene) Nannochloropsis oceanica

Overview
NameNO20G00770
Unique NameNO20G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1251
Alignment locationchr20:258593..259843 +

Link to JBrowse

Properties
Property NameValue
DescriptionVacuolar protein sorting-associated protein 45
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:258593..259843 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00770.1NO20G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00770.1NO20G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00770 ID=NO20G00770|Name=NO20G00770|organism=Nannochloropsis oceanica|type=gene|length=1251bp
GTCCAGACGACCCCCAACCTGTTGGTGTGGAGGGAATTTCCGTCTTTTTA
TGTTAGCGGCCAATTTTAAAGCGGGTGCGTGCTGAGCACGTGCCAAAAAA
GGCTGCAAGGCGTGGAGACGAGACAGCATCCTGTCTGAGAGTGCAGAAGC
GACTAACAGCGGACGCAGCTCAGCGAACAAAACAAAAGCATGCTCTGCAA
ACAGCAAACGCGACTGACCAGGTCACCAGGATAGTGGCTACGTTTTCTAT
ATCATTTTGGCTTCGTTGTCTAGTTGTCCCTGATTTAATAATTGATTAAT
TGACAGCCCCTTTCGTAATTGGTTAGTCCTGGCAAAGCAAGATGCTGCGG
TATTAAGCCGGGCACGATGACGTCACCTTCAATATCTGTACGTCCTCTAT
CGCATGCAACCTGCGTCCTCTAGGACATGCATACGAGGGGGAGCCTTCCA
ACAATAAAATGTTGCATATTCATCCCTTATTTTGGTTCGAGTTTTTGGAT
CAGGCAAAGTCCCCGGACGGCCCACACAGGGCCAGGAGGAGAAGGGGAAG
GAGGATAAAAGAGGAGGTCAGCGGGAAGGCTACACATAGAGTGTTCGCAT
ATCTTGCCGCGGTTGACCAAACCGAAGATCATGGGGACGAGCTTCTCCAC
GGACCATACTCCTGTACACCCGCAGAATGTTACGTGTCCCATTGCCGTCC
CGAGATACGAACTGTTCACAGGTGTCACACCAACAAAGTCCTCGGATGAA
CCGCCCATGACCTCCTCCTCCTCCTCCTCCTCCGATCCCAAGgtagagag
ggagggagggagggagggagggagggagccttgcttctacgccttgcgtc
attttaaaccctttcctccctccctccctccctccctccctccctccctc
ccttcctccctccctccctggcagGTCAAGCCCGGGAGCAAGCTTCGCCT
CGCCCTCCTCTACTGCCTCCGCTACGAGGACCGGCCCTCCGACTACCAGC
CCCAAAATATCACCTCAATAAAGAGGGCACTGGCACGGCATGGCGTTCCC
CCAGATTCTTCCATATCTCGAGGCCGCGAGCTTTTAAAACCTTGTGCTGG
TTCTGCTCACTAAAACACGAAAGCGAAAGAACCAGGGGACGATATACCAG
TACTCCGCCGAAATTCTGCCTCTATGCAGCTGGCTGCATGATAACTCCAA
TTCGACGGCTTTCTTTGTCTGGGAGAAGGATGAACGAGGAGCAAAAAAAT
G
back to top

protein sequence of NO20G00770.1

>NO20G00770.1-protein ID=NO20G00770.1-protein|Name=NO20G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MGTSFSTDHTPVHPQNVTCPIAVPRYELFTGVTPTKSSDEPPMTSSSSSS
SDPKVKPGSKLRLALLYCLRYEDRPSDYQPQNITSIKRALARHGVPPDSS
ISRGRELLKPCAGSAH*
back to top
Synonyms
Publications