NO20G00760, NO20G00760 (gene) Nannochloropsis oceanica

Overview
NameNO20G00760
Unique NameNO20G00760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2426
Alignment locationchr20:256725..259150 -

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Properties
Property NameValue
DescriptionPhosphoglycerate mutase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:256725..259150 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029033His_PPase_superfam
IPR013078His_Pase_superF_clade-1
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO20G00760 vs. NCBI_GenBank
Match: XP_005854198.1 (phosphoglycerate mutase, partial [Nannochloropsis gaditana CCMP526] >EKU22162.1 phosphoglycerate mutase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 146.7 bits (369), Expect = 1.500e-31
Identity = 84/177 (47.46%), Postives = 103/177 (58.19%), Query Frame = 0
Query:    1 MVPFPQSFLPPPSSRLATPPLVIFYIVRHGESTGNRDGVLQGQRDYPLTETGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIVQELQGKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDKDLREIAGGVREGRSLTLSLKEVTAQAA 178
            M+PF     P      AT PLV+FYI+RHGESTGNR G+LQGQRDYPLT+TG++QA   GRRLR++A  Q+    DVS FF  IY+SDLTRAK+TAE+IV+EL G +                                       TLD DLREI+GG REG+ L LSL+E   + A
Sbjct:    1 MLPFSPPSHPAKRKHFATSPLVVFYIIRHGESTGNRQGILQGQRDYPLTDTGRQQAQETGRRLRQDASLQDLETGDVSCFFDRIYSSDLTRAKNTAEIIVEELTGGK----RQPSKDPSHHGSNDTSSNTCHNDDNANDIGLESLLTLDTDLREISGGAREGQPLGLSLQEAMRRTA 173          
BLAST of NO20G00760 vs. NCBI_GenBank
Match: WP_017870404.1 (histidine phosphatase family protein [Deinococcus wulumuqiensis])

HSP 1 Score: 73.9 bits (180), Expect = 1.300e-9
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = 0
Query:   11 PPSSRLA----TPP----LVIFYIVRHGESTGNRDGVLQGQRDYPLTETGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIVQELQG 106
            PPS RLA    TPP       F++VRHGEST N DG  QGQ D PL+  G  QAA +  RL  ++             F  +Y+SDL RA+ TAE++ + L+G
Sbjct:    8 PPSKRLAPTGFTPPDRATAAEFWVVRHGESTWNADGRYQGQTDVPLSALGALQAASLAERLTGQS-------------FDAVYSSDLARARQTAEVVAERLEG 97          
BLAST of NO20G00760 vs. NCBI_GenBank
Match: WP_103128788.1 (histidine phosphatase family protein [Deinococcus aerius] >GBF05348.1 phosphoglycerate mutase [Deinococcus aerius])

HSP 1 Score: 72.8 bits (177), Expect = 2.800e-9
Identity = 43/102 (42.16%), Postives = 53/102 (51.96%), Query Frame = 0
Query:    5 PQSFLPPPSSRLATPPLVIFYIVRHGESTGNRDGVLQGQRDYPLTETGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIVQELQGK 107
            P  FL PP  R AT     F++VRHGEST N DG  QGQ D PL+  G  QAA +  RL                 F  +Y+SDL RA  TAE++ + L G+
Sbjct:    7 PTGFL-PPERRTATE----FWVVRHGESTWNADGRYQGQTDVPLSHIGILQAATLAERL-------------TGMHFDAVYSSDLARASQTAEMVAERLSGR 90          
BLAST of NO20G00760 vs. NCBI_GenBank
Match: XP_011442949.1 (PREDICTED: fructose-2,6-bisphosphatase TIGAR isoform X2 [Crassostrea gigas] >XP_011442950.1 PREDICTED: fructose-2,6-bisphosphatase TIGAR isoform X1 [Crassostrea gigas])

HSP 1 Score: 70.9 bits (172), Expect = 1.100e-8
Identity = 56/180 (31.11%), Postives = 78/180 (43.33%), Query Frame = 0
Query:   26 IVRHGESTGNRDGVLQGQRDYPLTETGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIVQELQGKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDKDLREIAGGVREGRSLTLSLKEVTAQAARELHLSVDQFQAPPFETLNDLLSRAHRF 206
            IVRHGE++ NR+G++QGQ D PL++ G  QA +V +RL+KE+             F  I +SDL+RAK TAE IVQ                                               D+ LRE   GV EG+      +E+   A +  H S  +F  P  ET+ ++  RA  F
Sbjct:    8 IVRHGETSYNRNGIIQGQTDIPLSDVGLEQARLVAQRLQKES-------------FTHIISSDLSRAKETAEAIVQTNTASS------------------------------------CPLNFDERLRERRFGVYEGK----PSRELMEAAKQNSHRSWTEFSPPGGETMKEVHERAVTF 134          
BLAST of NO20G00760 vs. NCBI_GenBank
Match: WP_019585098.1 (histidine phosphatase family protein [Deinococcus apachensis])

HSP 1 Score: 70.1 bits (170), Expect = 1.800e-8
Identity = 41/101 (40.59%), Postives = 49/101 (48.51%), Query Frame = 0
Query:    5 PQSFLPPPSSRLATPPLVIFYIVRHGESTGNRDGVLQGQRDYPLTETGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIVQELQG 106
            P  FLPP   R        F++VRHGEST N DG  QGQ D PL+  G  QAA +  RL                 F  +Y+SDL RA  TAE + + L G
Sbjct:    7 PTGFLPPDRRRATE-----FWVVRHGESTWNADGRYQGQTDVPLSHIGILQAATLAERL-------------TGMHFDAVYSSDLARASQTAETVAERLVG 89          
BLAST of NO20G00760 vs. NCBI_GenBank
Match: WP_034358535.1 (histidine phosphatase family protein [Deinococcus phoenicis] >EYB67519.1 phosphoglycerate mutase [Deinococcus phoenicis])

HSP 1 Score: 69.3 bits (168), Expect = 3.100e-8
Identity = 40/101 (39.60%), Postives = 51/101 (50.50%), Query Frame = 0
Query:    5 PQSFLPPPSSRLATPPLVIFYIVRHGESTGNRDGVLQGQRDYPLTETGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIVQELQG 106
            P +    P  R AT     F++VRHGEST N DG  QGQ D PL+  G  QA+ +  RL                 F  +Y+SDLTRA  TAE++ + L G
Sbjct:    6 PPTGFVAPDRRTATE----FWVVRHGESTWNADGRYQGQTDVPLSHVGILQASTLAERL-------------TGQHFDAVYSSDLTRASQTAEIVAERLSG 89          
BLAST of NO20G00760 vs. NCBI_GenBank
Match: CBN78654.1 (Phosphoglycerate mutase [Ectocarpus siliculosus])

HSP 1 Score: 68.6 bits (166), Expect = 5.400e-8
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   21 LVIFYIVRHGESTGNRDGVLQGQRDYPLTETGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIVQELQG 106
            L   + VRHGE+T NR+G++QG +DY LT  G  QA     RLR              + +   Y+SDLTRA HTAE+I++E  G
Sbjct:    5 LCTLHFVRHGETTANREGIIQGHQDYDLTPIGINQAVATAIRLR-------------GNTYWQTYSSDLTRASHTAEIILEEHAG 76          
BLAST of NO20G00760 vs. NCBI_GenBank
Match: WP_084049724.1 (histidine phosphatase family protein [Deinococcus hopiensis] >SMB94609.1 probable phosphoglycerate mutase [Deinococcus hopiensis KR-140])

HSP 1 Score: 68.6 bits (166), Expect = 5.400e-8
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 0
Query:    5 PQSFLPPPSSRLATPPLVIFYIVRHGESTGNRDGVLQGQRDYPLTETGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIVQELQGK 107
            P + L  P  R AT     F++VRHGEST N  G  QGQ D PL+  G  QAA +  RL  +              F  +Y+SDL RA  TAE +V+ LQG+
Sbjct:    6 PPTGLTAPDRRSATE----FWVVRHGESTWNASGRYQGQTDVPLSPVGVLQAAALAERLTGQR-------------FDAVYSSDLARAFQTAEAVVERLQGQ 90          
BLAST of NO20G00760 vs. NCBI_GenBank
Match: PPR06427.1 (hypothetical protein CVT26_004839 [Gymnopilus dilepis])

HSP 1 Score: 68.6 bits (166), Expect = 5.400e-8
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0
Query:   20 PLVIFYIVRHGESTGNRDGVLQGQRDYPLTETGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIV 101
            PL+  Y+VRHGE+  NRDG++QG ++  L ETG+ QA +VG R R       E + D+      +Y SDLTRA+ TAE I+
Sbjct:   16 PLMRVYLVRHGETQENRDGIIQGHKNTVLNETGQEQARIVGERFR-------ETKIDI------LYTSDLTRARSTAEAIL 83          
BLAST of NO20G00760 vs. NCBI_GenBank
Match: WP_104991117.1 (histidine phosphatase family protein [Deinococcus sp. NW-56])

HSP 1 Score: 68.6 bits (166), Expect = 5.400e-8
Identity = 39/95 (41.05%), Postives = 48/95 (50.53%), Query Frame = 0
Query:   12 PSSRLATPPLVIFYIVRHGESTGNRDGVLQGQRDYPLTETGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIVQELQGK 107
            P  R AT     F++VRHGEST N DG  QGQ D PL+  G  QAA +  RL                 F  +Y SDLTRA  TA+ + + L G+
Sbjct:   12 PDRRTATE----FWVVRHGESTWNADGRYQGQTDVPLSHIGVLQAAALAERL-------------TGQHFDAVYTSDLTRASQTADAVAERLAGQ 89          
The following BLAST results are available for this feature:
BLAST of NO20G00760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854198.11.500e-3147.46phosphoglycerate mutase, partial [Nannochloropsis ... [more]
WP_017870404.11.300e-942.72histidine phosphatase family protein [Deinococcus ... [more]
WP_103128788.12.800e-942.16histidine phosphatase family protein [Deinococcus ... [more]
XP_011442949.11.100e-831.11PREDICTED: fructose-2,6-bisphosphatase TIGAR isofo... [more]
WP_019585098.11.800e-840.59histidine phosphatase family protein [Deinococcus ... [more]
WP_034358535.13.100e-839.60histidine phosphatase family protein [Deinococcus ... [more]
CBN78654.15.400e-842.35Phosphoglycerate mutase [Ectocarpus siliculosus][more]
WP_084049724.15.400e-841.18histidine phosphatase family protein [Deinococcus ... [more]
PPR06427.15.400e-845.68hypothetical protein CVT26_004839 [Gymnopilus dile... [more]
WP_104991117.15.400e-841.05histidine phosphatase family protein [Deinococcus ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002559NSK002559Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00760.1NO20G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100621g3gene8240Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00760.1NO20G00760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00760 ID=NO20G00760|Name=NO20G00760|organism=Nannochloropsis oceanica|type=gene|length=2426bp
TTATCCTCCTTCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGAC
TTTGCCTGATCCAAAAACTCGAACCAAAATAAGGGATGAATATGCAACAT
TTTATTGTTGGAAGGCTCCCCCTCGTATGCATGTCCTAGAGGACGCAGGT
TGCATGCGATAGAGGACGTACAGATATTGAAGGTGACGTCATCGTGCCCG
GCTTAATACCGCAGCATCTTGCTTTGCCAGGACTAACCAATTACGAAAGG
GGCTGTCAATTAATCAATTATTAAATCAGGGACAACTAGACAACGAAGCC
AAAATGATATAGAAAACGTAGCCACTATCCTGGTGACCTGGTCAGTCGCG
TTTGCTGTTTGCAGAGCATGCTTTTGTTTTGTTCGCTGAGCTGCGTCCGC
TGTTAGTCGCTTCTGCACTCTCAGACAGGATGCTGTCTCGTCTCCACGCC
TTGCAGCCTTTTTTGGCACGTGCTCAGCACGCACCCGCTTTAAAATTGGC
CGCTAACATAAAAAGACGGAAATTCCCTCCACACCAACAGGTTGGGGGTC
GTCTGGACTCCTGCTGATACTCTGGCCTCGCTTTGCCGAGTAACCCAGGA
AAGGCCGAGGTGCTGGTAACCACCCATGGTGCCTTTCCCACAATCCTTTC
TCCCGCCACCCTCCAGCAGACTTGCCACGCCTCCCCTGGTCATATTTTAC
ATCGTGCGCCACGGAGAAAGCACGGGCAACCGGGATGGAGTTCTGCAAGG
CCAGAGGGATTATCCTCTCACCGAGACGGGAAAGAGACAAGCAGCTGTTG
TCGGCCGACGGCTACGGAAGGAAGCAGGATCCCAAGAAGAAGGGGAGGAC
GATGTCTCTTCTTTTTTCCAAGGTATATATGCAAGTGATCTGACTAGgta
aggccttgagaggggaggggggacgggaagaagggaatatttccaattca
ggaaagcaactccccttacatttctcccctccctccctccctccctccct
ccctccctccctccctccctcctcacctcgatgacataccccctcagAGC
GAAGCATACGGCCGAGCTCATCGTGCAGGAACTCCAGGGGAAACAGCGCC
GAAAGCGGGAGGCGACCCACAGTCGGAGCTGTAGTAGTAGTAGTAGCAGT
AGCAGCAGCAGCGGTAGCAGCAGCAGCAGCAGCACCACCACCACCACCAC
CACCAACGTCGTGACCCTAGACAAAGACTTAAGGGAAATCGCGGGGGGGG
TACGGGAGGGGCGATCGTTGACCCTGTCGTTAAAGGAGGTGACGGCCCAG
GCGGCTCGTGAACTGgtacgttatgacaacctccatattcatctcttttg
cttcctcctgtcctgtttgcatatccttacacttctatacctctctctct
ccctccctgcctccctctctcgtgctcttcccagtctctttactcttccc
tctcaaccaattgcagtctccctcacttccctcccttccctccttccctc
acaccctccctccctccctccctcctcagCACCTTTCGGTGGATCAGTTT
CAGGCCCCGCCTTTCGAGACCTTGAACGACCTCCTCTCTCGGGCCCATCG
CTTCGTTGAGAGAATCCTCACGTTGGCTGCTGCCGAACAAGCAGGAGGAG
GAGCGGGAAAAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGAAGGAGGAGGAAGCAGGAAAGGGGATAGGCGTGGACGGACGGG
CGGAAAGAAGTGGCAGGGGGGAGGAGGAAGGGAGGGGAAGACGGCAGGGG
GAGAGGGGGGGCCGATGCGGGTGCTGGTTGTGTCTCACGGGGGCTTGCTG
TTGCAGATGCTCCAAAAGgtatccctccctccctccctccctcccttcct
tccttcctccttttatctcttggcaaggtgttcggttttcgttccacgca
cagggtgctcaatgcatctctgactgtagcagaggcttaccctccctccc
tccctccctccctccctccctccctccctccctccctcacttggcagGTG
TTCGGTTTTCGTTCCACGCACAGGGTGCTCAATGCGTCGCTGACTGTAGT
AGAGGCTTACCCTCCCTCGGTCCATAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGGGTAGCGGTGGGTGGAAGGGGCGAGGCGGTGGAGAGCCAT
GTCACGCCCTCCTCCTTCTGTGCGGTCTGGAGTCCCTCCTTCTTGCCACG
ATCGTTGCGGATGGCGGCCGAGGGGGTAGGGAGGGAGGGAGGGACGGACG
GACAGAGGGAGGGAGGGAAGGCAGAGGAGTGTGTGTTTCGGGCGAGGTGC
GTTAATGACGTGGAACATCTGCGGGTGCTGGGGATGGTGACGGCCAGGAG
TGTGGCATTTTAAACAGAATAGGAGG
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protein sequence of NO20G00760.1

>NO20G00760.1-protein ID=NO20G00760.1-protein|Name=NO20G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MVPFPQSFLPPPSSRLATPPLVIFYIVRHGESTGNRDGVLQGQRDYPLTE
TGKRQAAVVGRRLRKEAGSQEEGEDDVSSFFQGIYASDLTRAKHTAELIV
QELQGKQRRKREATHSRSCSSSSSSSSSSGSSSSSSTTTTTTTNVVTLDK
DLREIAGGVREGRSLTLSLKEVTAQAARELHLSVDQFQAPPFETLNDLLS
RAHRFVERILTLAAAEQAGGGAGKGGRGGGGGGGGGGGGEGGGSRKGDRR
GRTGGKKWQGGGGREGKTAGGEGGPMRVLVVSHGGLLLQMLQKVFGFRST
HRVLNASLTVVEAYPPSVHKEEEEEEEEEEGVAVGGRGEAVESHVTPSSF
CAVWSPSFLPRSLRMAAEGVGREGGTDGQREGGKAEECVFRARCVNDVEH
LRVLGMVTARSVAF*
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Synonyms
Publications