NO19G02200, NO19G02200 (gene) Nannochloropsis oceanica

Overview
NameNO19G02200
Unique NameNO19G02200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2146
Alignment locationchr19:628740..630885 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:628740..630885 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G02200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004561NSK004561Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02200.1NO19G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|161641gene_7621Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02200.1NO19G02200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02200 ID=NO19G02200|Name=NO19G02200|organism=Nannochloropsis oceanica|type=gene|length=2146bp
ATGGAGGTAGCGGCAAGAGCAGAAGCACTCGCACAGACAGCCGCGGCTGC
AGCAGCGACAGCGGCAGCGGCAGCGGCAGCAGCGGCAACAGCGGCAACAA
CAACCGCAGCAGCAGTAGGTGTGAAAACAGTAGCGCCTACAGCAAGAGAG
AGTGGCAGATGGGAGGACAGTGAAAGGGTGTCAAGTAAGACTGCCTCTCC
CCAATCTCCTTGTGTACCGTCTGAGTGCACGAAACGAAGCGGTGACGATG
ACGAAGGCGAGGGCGAGGGCGAGGATGTGGAGGAGGGCAAGAGGGAGGGC
GAGGATGAGGAGGAGGGCAAGGGGGAGGGGGAGAGGGAGGAAGGGGCTGA
GTCCCACGCGATCGCTGCGGGGGCACCAACTCGAGCAGCGACGGCCGGTG
TGACGAAAGAGAAAAAGAACGAGGAGGAGGAGGAGGAGGAGGAGGAGAGG
GAAAACGAAAAAGAAGAGGAAGAAGGAGTAGTAGTAGTAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GATGGGGAAATGTAGAGGAATGGAAGCATGTGCATCGATACGCTTGGGCT
GACGTGCAGAAGAAGGGAGAGCTCAGgtgcattgttcgaccccttcctcc
ctccctccctccctccatttttcctcacttctttcctcatcttactatcc
acctatccatatacgagctgtactcccactcttctcctctctttctatcc
cttttcttctcctcctctgcatccgtccaagcttcctccctccctcactc
ccaccccctcttcctcccttcccccttccccccctcccttagGTTTCAGG
GCATTGTCGTGCCTACTGGAGGGATGCATGTTGCGATCAAGTTCTTGGAC
AAACTAGGAGTCGATCTCGGGCAAGGCGTGATTTGTCTCAAGGAGGTGGT
GTCGAGGGGAAAAGGGAGGGAGGGAGTGAGTGAGGGGGCGACGGAGGTGA
GGGTGAAGTTGTCAGTCGGAGGGATGGGGCTGGGGGAGATGGGGATGCTG
GTAGTAGTGAAGAGCAGGAAGAGGCATTCGATGGCGGAAGAGTGGGTGAG
GAGTGGCTCCGCGGGGGCCGCCGGAAGAGGAGGAGGAGAAGGAGAGGGGG
GAGGAGAGGGAGGAGGAAGAGGAAGAGGAAGAGGAGGACCATTAGGAGGA
GGAGAGGGAGCAAAACGATCCGCAGGGACAGGAGAAGGAGGGGTTGGTGG
AGCAGTAGGAGTAGAAGAAGTAGCAGAATGTGAGATGTTGAAGGAGGAGG
AGGAGCAGCAGCAGGAAGAGGGAGAGGAGGAATGGGAGGAGAATGATGAG
AAAGATGAGGAAGAGGAAAAGGGAGTCTGGCGGCTGTGGGAGTAGGTAGA
GGGTAAGGCACGGCAGTCCGTGGGGTGGGAGAGGGCGAGCGAGAGAAGAA
GAGTCAGGAGAAGGGCGGAAGATTGGCCTGCGTTCAGGGGTGGAGATTTT
GGTGCAAGAAAGCGATAGAGAGGAAGAGGGACGAGAAGAGGCAACAGCAA
GAGAGGGAGAAATTATAAAAGGCGTCGGCTCGAAGGGAAGAGAGACAGGG
AAGGAGGAAAGGGTCAACCGAGACGAGACATCTCGTCCGTGTACCGCAGA
GGGTTTGAAAGCGCAGGAAAGTCTTCCCTTAGAGTAAAGGCTGCAGCAGG
AGCAGCATTAGCGAATGACAAATGAGAATATATGAAGAAGTAGGTAGTTT
ATAAATAGGGCGGAAGACGTCGAGAAAGGGCGAGAGAGATTTTAGTAGAC
ATCGTGCGTTCCGGAAAGACAAGGGCCGACGAAATAGGGAGAGTGTGTAT
GGATAATGACGACGACGATGTGAATGACCAGATGCACGCAATCGAAAGAT
GAAGCGTGTGATCGAATAGATGTATGCGAAAAAGACACAAGCGAAAAGGG
GGACGATCTATGTGATGACGTCCATCCTTCGTTCCCTCCCTCTCTCCCCT
CTCAACCTGTATCCGAAGACACAAGTGAGAAAGGGAGCAAGAAGACTCTG
AACAAACAAAAGAATAAGGATAAGTGCAACAGAATATGCATTACCGCCGA
ATGAATTGCCAAGCCCAGACTTATCTCTTTCTCATACTTCATCCTT
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protein sequence of NO19G02200.1

>NO19G02200.1-protein ID=NO19G02200.1-protein|Name=NO19G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MEVAARAEALAQTAAAAAATAAAAAAAAATAATTTAAAVGVKTVAPTARE
SGRWEDSERVSSKTASPQSPCVPSECTKRSGDDDEGEGEGEDVEEGKREG
EDEEEGKGEGEREEGAESHAIAAGAPTRAATAGVTKEKKNEEEEEEEEER
ENEKEEEEGVVVVEEEEEEEEEEEEEEEEEEEEGWGNVEEWKHVHRYAWA
DVQKKGELRFQGIVVPTGGMHVAIKFLDKLGVDLGQGVICLKEVVSRGKG
REGVSEGATEVRVKLSVGGMGLGEMGMLVVVKSRKRHSMAEEWVRSGSAG
AAGRGGGEGEGGGEGGGRGRGRGGPLGGGEGAKRSAGTGEGGVGGAVGVE
EVAECEMLKEEEEQQQEEGEEEWEENDEKDEEEEKGVWRLWE*
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Synonyms
Publications