NO19G00430, NO19G00430 (gene) Nannochloropsis oceanica

Overview
NameNO19G00430
Unique NameNO19G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1839
Alignment locationchr19:165912..167750 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:165912..167750 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036617BAF_sf
Homology
BLAST of NO19G00430 vs. NCBI_GenBank
Match: CBJ48376.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-17
Identity = 51/121 (42.15%), Postives = 79/121 (65.29%), Query Frame = 0
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD----IHTTHQLIGEYLKMKGKD-----VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAFHHTA 119
            +DP +S+VS +    ++RS +TGDLTEVPGI  + AE L   +    +  T+QLIG++L ++G D     VD   H   F+  +QA G++S+R+ +V+AIA KV+ W+PG+YDA ++  TA
Sbjct:    6 YDPKRSKVSDDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTDTA 126          
BLAST of NO19G00430 vs. NCBI_GenBank
Match: EJK44675.1 (hypothetical protein THAOC_36769 [Thalassiosira oceanica])

HSP 1 Score: 93.6 bits (231), Expect = 7.200e-16
Identity = 49/117 (41.88%), Postives = 75/117 (64.10%), Query Frame = 0
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGP----KHAEHLHAKDIHTTHQLIGEYLKMKGKDVDPKM-----HAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP +S+VS ++ + ++R+ + GD+TEVPGIGP    K AE  H + I  T+QLIG++L +KG D D        H + F+  +Q   +S+HR+ +V AIA KV+  LPG+YDA  +
Sbjct:    6 YDPKRSRVSDDSLMDFIRAQVQGDITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDNKVESMEHCEKFWYWLQDKQISAHRSAIVKAIAMKVNGLLPGVYDADLY 122          
BLAST of NO19G00430 vs. NCBI_GenBank
Match: GAX22368.1 (hypothetical protein FisN_3Hh424 [Fistulifera solaris])

HSP 1 Score: 91.7 bits (226), Expect = 2.800e-15
Identity = 45/114 (39.47%), Postives = 69/114 (60.53%), Query Frame = 0
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD------IHTTHQLIGEYLKMKGKDVDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP +S+V+ +    +++  I GDL EVPGIGP   + L   D      I TT+QLIG YL +K  + DP  H  +F+  ++  G+SSHR+ +V  IA K + ++PG+YD S +
Sbjct:    6 YDPKRSKVNKDKLDEFVQREIKGDLEEVPGIGPAAVKKLAEPDAQGNPGITTTYQLIGAYLSLKNSECDPVSHNDYFWYWLKEKGISSHRSGIVQCIAKKCNSFMPGLYDPSMY 119          
BLAST of NO19G00430 vs. NCBI_GenBank
Match: GAX10227.1 (hypothetical protein FisN_3Lh424 [Fistulifera solaris])

HSP 1 Score: 91.7 bits (226), Expect = 2.800e-15
Identity = 45/114 (39.47%), Postives = 69/114 (60.53%), Query Frame = 0
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD------IHTTHQLIGEYLKMKGKDVDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP +S+V+ +    +++  I GDL EVPGIGP   + L   D      I TT+QLIG YL +K  + DP  H  +F+  ++  G+SSHR+ +V  IA K + ++PG+YD S +
Sbjct:    6 YDPKRSKVNKDKLDEFVQRDIKGDLEEVPGIGPAAVKKLAEPDAQGNPGITTTYQLIGAYLSLKNSECDPVSHNDYFWYWLKEKGISSHRSGIVQCIAKKCNSFMPGLYDPSMY 119          
BLAST of NO19G00430 vs. NCBI_GenBank
Match: XP_008863888.1 (hypothetical protein H310_02224 [Aphanomyces invadans] >ETW07795.1 hypothetical protein H310_02224 [Aphanomyces invadans])

HSP 1 Score: 90.9 bits (224), Expect = 4.700e-15
Identity = 48/120 (40.00%), Postives = 79/120 (65.83%), Query Frame = 0
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD-----IHTTHQLIGEYLKMK----GKD--VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAFH 116
            +DPAKS+++ +    +LR+P+TG LTEVPGIGP  A++L A D     I  T QL+G+++ +K    G D  +D + H   F+  +++ G++S+R+ +V AIA K++  +PG+YDA  F+
Sbjct:    6 YDPAKSRIADDTLADFLRAPLTGVLTEVPGIGPAAAKNLAAGDDPADQITNTFQLMGKFMLLKRNEDGSDEPIDCRTHCDAFWHWLKSKGITSYRSGIVMAIAEKMNTMIPGVYDACDFN 125          
BLAST of NO19G00430 vs. NCBI_GenBank
Match: XP_005854378.1 (hypothetical protein NGA_0223210 [Nannochloropsis gaditana CCMP526] >EKU21984.1 hypothetical protein NGA_0223210 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 90.5 bits (223), Expect = 6.100e-15
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 0
Query:   63 MKGKDVDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAFHHTAGPTTEGKNEHELIA 133
            MKGK+VDPK HAQ FY+HIQ YG+ SHR+ +VDAIASKVSMW+PGMYD+ A+   +    E KN  + +A
Sbjct:    1 MKGKNVDPKDHAQRFYEHIQEYGLDSHRSGIVDAIASKVSMWVPGMYDSGAY--ASSGAAESKNVVDPVA 68          
BLAST of NO19G00430 vs. NCBI_GenBank
Match: OQR93017.1 (hypothetical protein ACHHYP_03012 [Achlya hypogyna])

HSP 1 Score: 90.5 bits (223), Expect = 6.100e-15
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 0
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD-----IHTTHQLIGEYLKMKGKD------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAFH 116
            ++P KS+++ +    +LR+P+TG LTEVPGIGP  A+ L   D     +  T QLIG++L +K  D      +D   H   F+  ++A GVSS+R+ +V AIA KV+  +PG+YDA  F+
Sbjct:    6 YNPEKSRIAEDTLADFLRAPLTGVLTEVPGIGPAAAKKLAGGDDVADQVTNTFQLIGKFLMLKRNDDETDEPIDCPTHCDAFWHWLKAKGVSSYRSGIVMAIAEKVNTMVPGVYDACDFN 125          
BLAST of NO19G00430 vs. NCBI_GenBank
Match: XP_008607465.1 (hypothetical protein SDRG_03606 [Saprolegnia diclina VS20] >EQC39404.1 hypothetical protein SDRG_03606 [Saprolegnia diclina VS20])

HSP 1 Score: 90.1 bits (222), Expect = 8.000e-15
Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 0
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD-----IHTTHQLIGEYLKMKGKD------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAFH 116
            ++P KS+++ +    +LR+P+TG LTEVPGIGP  A+ L   D     +  T QLIG++L++K  D      +D   H   F+  +++ GVSS+R+ +V AIA KV+  +PG+YDA  F+
Sbjct:    6 YNPEKSRIAEDTLADFLRAPLTGVLTEVPGIGPAAAKKLAGGDDVADQVTNTFQLIGKFLQLKRNDDETDEPIDCPTHCDAFWHWLKSKGVSSYRSGIVMAIAEKVNTMVPGVYDACDFN 125          
BLAST of NO19G00430 vs. NCBI_GenBank
Match: XP_009824534.1 (hypothetical protein H257_02548 [Aphanomyces astaci] >ETV86062.1 hypothetical protein H257_02548 [Aphanomyces astaci])

HSP 1 Score: 89.7 bits (221), Expect = 1.000e-14
Identity = 46/120 (38.33%), Postives = 77/120 (64.17%), Query Frame = 0
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHL-----HAKDIHTTHQLIGEYLKMKGKD------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAFH 116
            +DPAKS+++ +    +LR+P+TG LTEVPGIGP  A++L      A  I  T QL+G+++ +K  +      +D + H   F+  +++ G+SS+R+ +V AIA K++  +PG+YDA  F+
Sbjct:    6 YDPAKSRIADDTLADFLRAPLTGVLTEVPGIGPAAAKNLAKGDDPADQITNTFQLMGKFMLLKRNEDDTDEPIDCRTHCDAFWHWLKSKGISSYRSGIVMAIAEKMNTMIPGVYDACDFN 125          
BLAST of NO19G00430 vs. NCBI_GenBank
Match: XP_012193793.1 (hypothetical protein SPRG_00301 [Saprolegnia parasitica CBS 223.65] >KDO35453.1 hypothetical protein SPRG_00301 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 89.7 bits (221), Expect = 1.000e-14
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 0
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD-----IHTTHQLIGEYLKMKGKD------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAFH 116
            ++P KS+++ +    +LR+P+TG LTEVPGIGP  A+ L   D     +  T QLIG++L +K  D      +D   H   F+  +++ GVSS+R+ +V AIA KV+  +PG+YDA  F+
Sbjct:    6 YNPEKSRIAEDTLADFLRAPLTGVLTEVPGIGPAAAKKLAGGDDVADQVTNTFQLIGKFLSLKRNDDETDEPIDCPTHCDAFWHWLKSKGVSSYRSGIVMAIAEKVNTMVPGVYDACDFN 125          
The following BLAST results are available for this feature:
BLAST of NO19G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ48376.11.300e-1742.15conserved unknown protein [Ectocarpus siliculosus][more]
EJK44675.17.200e-1641.88hypothetical protein THAOC_36769 [Thalassiosira oc... [more]
GAX22368.12.800e-1539.47hypothetical protein FisN_3Hh424 [Fistulifera sola... [more]
GAX10227.12.800e-1539.47hypothetical protein FisN_3Lh424 [Fistulifera sola... [more]
XP_008863888.14.700e-1540.00hypothetical protein H310_02224 [Aphanomyces invad... [more]
XP_005854378.16.100e-1560.00hypothetical protein NGA_0223210 [Nannochloropsis ... [more]
OQR93017.16.100e-1540.83hypothetical protein ACHHYP_03012 [Achlya hypogyna... [more]
XP_008607465.18.000e-1540.00hypothetical protein SDRG_03606 [Saprolegnia dicli... [more]
XP_009824534.11.000e-1438.33hypothetical protein H257_02548 [Aphanomyces astac... [more]
XP_012193793.11.000e-1440.00hypothetical protein SPRG_00301 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00430.1NO19G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|276675gene_9743Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00430.1NO19G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00430 ID=NO19G00430|Name=NO19G00430|organism=Nannochloropsis oceanica|type=gene|length=1839bp
ACAGCCACTACCGCTACCACCACTTCTCCACCAACAACAATGACGgtacg
taccgtgctcccttgtgtgtgcgtcaatacgtgcccgtctcgttcttttc
ctcttcccatccgcttccatttcccaaccaccaaacccgtctcttttatc
ttcatctctcttgcacagAAGCATGGCACCTTCGACCCTGCCAAATCCCA
GGTCTCCCACGAGGCCCAGCTCCTGTGgtaggtacatgcatggcccgtcc
acctgcttatttgctgtctgcgtgcgtggagcgctgggttgacgtatcgt
ggcctttctcttccctctccatgcttttcttccttccaactttcttccct
tccgctgccctcgtcccctcctccccccctactctctgtccttctctcgc
ctaacgtccttctctccctcttgtgcatcgttatcttcgctgtcttattt
ctcttctgtgtgtctattccacacatccgtccaaccacatggcaccattt
acagGCTCCGGTCACCCATCACGGGAGATCTGACCGAGGTGCCCGGCATC
Ggtacgtccctcttctcctccctccctccatccttccttccctttctcgt
tccctccctccctcgttctatctcatttcaccttcccaccttccttcctc
ttcctacctccctttccacctcttcatttctcctgccagGCCCCAAACAT
GCCGAGCATCTGCACGCTAAGGATATTCACACCACCCATCAGCTCATCGG
CGAGgtaccctccctccctccctccctccctccctccctccctgccttgc
tcctttgctcatttctcttctcatgacatcaagaattgctaaccctcctg
tccctctctcccttcctcagTACCTCAAGATGAAGGGCAAGGACGTCGAT
CCCAAGgtcaacaaatatctcacaggagggggggaaggagggagggaggg
agggagggagagaggggcatgaaagcacatgaaggcctcccaccccggca
tctcgcccctccctccctcccgccttccttcctccctcagATGCATGCGC
AGCATTTCTATGATCATATTCAGGCGTACGGAGTCAGCTCTCACCGTACG
GACGTGGTGGATGCCATCGCGTCGAAGgtcaggagggggaggaagggagg
gggaagaaggagaaggagaaggagaaagggactatggggttttcttcaca
gcccgaaccactccctccctcccccctcccccctgccctccctcagGTCT
CCATGTGGCTGCCCGGCATGTATGATGCTTCTGCCTTTCATCACACCGCT
GGCCCCACCACGGAGGGAAAGAACGAGCATGAGCTTATTGCTGTTGCTGC
CACTGATACTACAGCTGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGTTG
CTGCTGTTGCTGCTGTTGCTGCTGCTGCTGTTCCTACCTCGGAGGAGGAG
GGCGGAAAAAAGGAGGTGGAGGGGGCGACAGCTGTGGAAATGGCGCCTGA
AGCATCACCCGTGGAAACGAATTAGAGATAACGGACGAAAGAAGGAGGTG
AGGAGGTGAGGGCAGGTAAGGCAAGGAGGGAGGGAGGGAGGGAGGGGGGA
AGGATCCGTTGACATGCGTCTATTTTTTCCTCTGCCTCTCTCTCTCTGTC
TCTCTCTCTTCTTTCTCTCTGCCCCCCTCTCTCTTTCCCCGAACTTCCTC
TTTTTGGGCCGTCTTAGTCTGTTGTTTCTATTTCGTTGTCGAAGAGAGGG
AGGCAGGGAGGGAAGGAGGGAGAGAAGGGGGGAGTCTACAAAGGACCTGT
CAGCTCAACTCCAAAATTTTCTCCTGCCGCTTCCTCTTC
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protein sequence of NO19G00430.1

>NO19G00430.1-protein ID=NO19G00430.1-protein|Name=NO19G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MTKHGTFDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKDI
HTTHQLIGEYLKMKGKDVDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASK
VSMWLPGMYDASAFHHTAGPTTEGKNEHELIAVAATDTTAATAAAAAAVA
VAAVAAVAAAAVPTSEEEGGKKEVEGATAVEMAPEASPVETN*
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Synonyms
Publications