NO18G02590, NO18G02590 (gene) Nannochloropsis oceanica

Overview
NameNO18G02590
Unique NameNO18G02590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1988
Alignment locationchr18:843677..845664 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:843677..845664 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM27399.1 (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 2.100e-15
Identity = 70/191 (36.65%), Postives = 94/191 (49.21%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNE--REGARATKFLCTP 189
            MR   SLLALGITL  T    A   L L SI+AVD    NKD W  KG I DP    VSA    G+   L+D   D +N V F A+DC    + R   CK  GARV+ K T++ PK    ++   ++  +   +Y ++  FR   F  N + SPLTA   +     + D+++ C    R+  R T   C P
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIK-TSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTVD-ESVLSDTLTLCYNLPRKNGRNTISHCEP 189          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM20105.1 (hypothetical protein Naga_101776g1 [Nannochloropsis gaditana])

HSP 1 Score: 90.9 bits (224), Expect = 4.700e-15
Identity = 63/177 (35.59%), Postives = 95/177 (53.67%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNER 177
            MRR  SLLALG+TL +TA +       L ++K  +  +  +DQWS KG + +P    V A    G+   L D + D +    F A +C  L+N RG+ CK  GARV+ KRT + PKG  ++S    N+ +   +Y  S +FRR +F  + + +P+T    + G   +   VS C+ER
Sbjct:   37 MRRILSLLALGVTLVMTAGQE----FTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVSCKKMGARVSIKRTRR-PKGAKVKSS---NSNSTGGYYGASGMFRRLQFLQDPVVTPVTVQVKV-GSTTLPAIVSTCSER 204          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM27397.1 (hypothetical protein Naga_101181g1 [Nannochloropsis gaditana])

HSP 1 Score: 89.0 bits (219), Expect = 1.800e-14
Identity = 66/191 (34.55%), Postives = 91/191 (47.64%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNE--REGARATKFLCTP 189
            MR   SLLALGITL  T        L L SI+AVD    NKD W  KG I DP    V      G+   L+D   D +N V F A DC    + +   CK  GARV  K T++ PK    ++   +   +   +Y ++  FRR  F  N + SPLTA   ++    + D++++C +  R+  R     C P
Sbjct:   69 MRSTLSLLALGITLGSTLVTTTGQSLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVPTIGQKGLTVELQDATTDLLNTVTFAARDCRVPAHGKRAACKIRGARVFIK-TSRRPKINTPKTVHAKRYNSTGGYYSVTGTFRRLTFLENPVVSPLTAALTVN-ESVLSDTLTSCYDLPRKNGRNPITHCEP 257          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM25644.1 (hypothetical protein Naga_100037g5 [Nannochloropsis gaditana])

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8
Identity = 55/184 (29.89%), Postives = 82/184 (44.57%), Query Frame = 0
Query:   24 PVLILSS--IKAVDVD--------RANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGE----IEDSVSNCNE--REGARATKF-LCTPS 190
            PVL+ +S  I+ VD          +A +D+W+  G+  DP    V      G+ A L+D     ++   F    C AL N RG+ CKT GAR+  K+T         +    RN ++  +FY++  VFRR  F    + +PLT IF +            +   C E  + G + TK   C PS
Sbjct:  139 PVLVNNSTCIRVVDFHTDPSAKSFKAKRDRWTITGFFNDPAETAVVNIGQYGIIAVLQDAAKKALSSTFFTPPQCKALNNIRGVTCKTTGARLRLKKT---------KDPSVRNKSSEGAFYKVKGVFRRLTFLQQPVQTPLTTIFAVQFPNTTTVFTTSATEQCTEKGKTGGKKTKIDCCRPS 313          
The following BLAST results are available for this feature:
BLAST of NO18G02590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
EWM27399.12.100e-1536.65hypothetical protein Naga_100212g1, partial [Nanno... [more]
EWM20105.14.700e-1535.59hypothetical protein Naga_101776g1 [Nannochloropsi... [more]
EWM27397.11.800e-1434.55hypothetical protein Naga_101181g1 [Nannochloropsi... [more]
EWM25644.11.100e-829.89hypothetical protein Naga_100037g5 [Nannochloropsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL011nonsL011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL010nonsL010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR094ncniR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR042ngnoR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02590.1NO18G02590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02590.1NO18G02590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02590 ID=NO18G02590|Name=NO18G02590|organism=Nannochloropsis oceanica|type=gene|length=1988bp
AAAAAAACCAAAAACCACAAAAAAAAACCAAAAACCACAAAAAAACCAAA
AACCACATAAAACAGGAAACTACAAAAAATGCAAACACTACAAACACAAA
GCAATAGCTAAATCCTCATTCTCAATCGTCTGTTTGTATGTTGACCCACA
CACAATATGTTCTCTCTGTAAACTATGGTTGTCCTTTTTTATGGGCCATG
GCATCCAACGCCTTGCCGGACGCATACGGCGCCATCTTCCGCACATTTAC
TGCGGCAGTCAGCCGTGGATCTCCCCTTCCCTTGTGTTTACGGTGCAAGG
CAGGGATATTCTCCCCCTCGCCTTTCCTTTCTCAGTGCCACCCGTCTGTT
TGAGGTACTGTAATCGACGTGTGGTATTGCTTGGGGTGTGTTGCCGTGCA
AGGGGCCCATGTAGCGGCCGCGCTCCCCCACCACCCAGAGTTTGCCATCT
GTTTGTCCCCCTCCGCACTCTGCGAATACCCGTGCCCTCTTTTCCTCCTC
CCGTCCTCCTTCTTTCTACTCCTCCTTGCAAATTTTCCCACCTTCATGTC
CATCCTTCCCATTCTCTCTCCCTCACTCCATTTCCTTCCGTCCTATTTAT
TATGTCTTCCCTCCTTTCTTCCCCTATCTCTCCCCCTCCACCATCCAATT
TATCGCCTCCCTTTCTCAAAGCTTTCGTTCCTTCCTTTTCCCTTTTTCCC
GCTCTCTCCTCTTTCTCTCTCCCTCTTTCATCCTCAGTTTGATCCGACAC
TCACTCTCCTCTTTTCCTCCCCTTTCTTCTTTCTCCTCTTTTCTTCACCT
CCATCCTCTCCTCCCATTCTGTTTCTCGTCCTTCGCTTTTCTCCCGTGTC
TATTATCCTACTGCTCTTTTTATTACTGCTCTTTACATCATCTGCCCGAC
ATTTTCGTATTCCTGCCGCGGCCTGACTGTGCCATTCAATTGACCTGCGT
CCCACGTCAGACATTGCACGCTTTCACACTTCTCACTTTAAGCACTCACC
TACGTCTATTCTATACCTCGCACCAACACAGCAAATAAGTTATACACCAT
GCGTCGCGCTTTTTCACTGCTTGCCCTCGGTATCACCCTCGCCTTGACGG
CAGCTGAGCCGGCTGAGCCGGTGTTGATCCTCTCCTCCATCAAGGCCGTC
GACGTGGACAGGGCGAACAAGGACCAATGGAGTGCTAAGGGCTATATCTA
TGACCCTGACGGGCTTTTTGTCTCGGCCCCTCCAGACGCTGGCATGTTTG
CGGCGCTTGAAGACGGGAATGACGATTTCGTGAACGGCGTGGACTTCGAC
GCAGCTGATTGCAATGCACTCAAAAACGATAGGGGAATCGTTTGTAAAAC
TGCGGGCGCCCGTGTCACGGCCAAGAGAACCAATAAGGTGCCGAAGGGTG
TTATGATCGAGTCGCAGAGGAACCGCAACACGACCACCATGTCTTCCTTC
TACAGGTTGTCGGCTGTTTTCCGCCGACAGGAGTTCAATAACACTCTGTC
GTCGCCTCTGACGGCTATCTTCGGTATTTCTGGCGTCGGTGAGATTGAAG
ACAGCGTCTCGAATTGCAATGAGAGGGAAGGAGCCAGGGCGACCAAGTTC
CTCTGCACTCCCTCCGCCAGCCCCTAGGCGCCATCTCATGGCCATTGGGC
GTCTAGTTGACATCACACTCTTTGGCCACGAGAGCTCTAGGTCCTGCGCA
TTACATGTTTATCTGTGACTTCGTCTTGTATGTTCGCACTCAGCCTGGAA
GCTCCGGCTTTCGTTCCTGACGCGTTGGTTTGTCTTTGTGCCTGAGAGTG
GTTTCTGTGTCAGTGCAGTGTTGTATCGTGTATGTGTGTATCTTCTTACT
CTAACACTACTTGTGTTATGTGCTTGTATTTCCAGGACCAGGCCACGGAG
TCTGACCATTGTAGCCAAAGGATTCATTCTATCGATTTGTAAGAAGAAAG
AAATGCCTTTAGGAGGCGATTATATATGTAAAGAGCTG
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protein sequence of NO18G02590.1

>NO18G02590.1-protein ID=NO18G02590.1-protein|Name=NO18G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYI
YDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCK
TAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEFNNTL
SSPLTAIFGISGVGEIEDSVSNCNEREGARATKFLCTPSASP*
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Synonyms
Publications