NO18G02310, NO18G02310 (gene) Nannochloropsis oceanica

Overview
NameNO18G02310
Unique NameNO18G02310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1877
Alignment locationchr18:751540..753416 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:751540..753416 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G02310 vs. NCBI_GenBank
Match: EWM23436.1 (hypothetical protein Naga_100778g3 [Nannochloropsis gaditana])

HSP 1 Score: 264.2 bits (674), Expect = 8.400e-67
Identity = 197/408 (48.28%), Postives = 232/408 (56.86%), Query Frame = 0 
Query:  103 PAPPLPHTLQCPPHTQQPPPTRTSRLEVLKGLSLRFVAAEGKGWGCPLPPAHVPTTSDANHVFKYLGAAFVDPFSGAIKTQRGLTISLLVLDEDGEEYGRLDNPRPWPGGGVYFFEGVTLPKKGLWTLRLTAKETIPGGRGGVGRREDGEMVLQGEVVGQRAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPFLLNLPKGVSLGLGDAPVIALDYLGPRLNTGRKSTYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLLPRRACNREDLILALALTQVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGEIMAAQKALLKKWKNVPRDCRWMEWEALREGRTGVVFERREWWRGLVGLMEWKKPRG--EGGGVG 509
            P+PPLP     P       P   SRL +LKGLSLRF++ +G+GW CPLPP+HVP+ +    V KY+GAAFVDP + AIK QRG TISL V+DE GEE G  DNPRPWPGGGVY+FE V LP KGLWTL+LTA+E+   G    G       V  G+V GQ+A                                                        LP  ++LGLGDAPVIALDYLGPR N GRK T  +                                  PRR C++EDL LAL++ +         XXXXXXXXXXXXXXXXXXXXXXXXXXXX GEI AAQKALL+K+K+VP+DCRW+E+EAL  GRT VVF RR W   LVG+ME++KP G  EGGG G
Sbjct:   94 PSPPLPPR---PDTVSVQVPEMRSRLGLLKGLSLRFISTQGRGWDCPLPPSHVPSPA-GKTVIKYVGAAFVDPATQAIKVQRGFTISLKVVDEAGEECGVSDNPRPWPGGGVYYFERVILPTKGLWTLKLTARESRKAGVDTTG------WVAHGDVAGQQATIFCGEMPGQAFPADSLTTDLVPSVPP----------------------------TLP--IALGLGDAPVIALDYLGPRKNLGRKDTRRA----------------------------------PRRTCSKEDLALALSVLE---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEISAAQKALLRKFKSVPQDCRWLEFEALTAGRTAVVFSRRAWEWDLVGMMEYRKPSGVREGGGEG 418
The following BLAST results are available for this feature:
BLAST of NO18G02310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23436.18.400e-6748.28hypothetical protein Naga_100778g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL009nonsL009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004075NSK004075Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02310.1NO18G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673767gene_8929Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100778g3gene7019Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02310.1NO18G02310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02310 ID=NO18G02310|Name=NO18G02310|organism=Nannochloropsis oceanica|type=gene|length=1877bp
ATGGCGGGGACGACAAACGCCACTATAGCCAGCAATATCGACAGCAGCAG
CAATAGCAGCAGTAACAGCTCCAGTAATAGCACTGGCAGCAGCAGCAGCA
ACAGCAGCACTGGCACTAGCAGCAAAAATAAAAGGGTAACCACCAACTCC
TCTTCCCCTGCCTCCGAAACGACCAGTCTACGCTCCACGCGGCGCTCTGC
GCGCGGCTCCATTTCCGTTCCTCCTTCTTCCAGCACCGGCACCAGCACGA
CCAACACAGCCTCCTGCGAATCCACGGAATGTCTGCCACCTGATGAAAAC
CACGCCCCTGCCCCCCCCCTTCCCCACACCCTCCAGTGCCCTCCTCATAC
CCAACAACCACCCCCAACCCGAACCAGCCGCCTCGAGGTCCTCAAGGGCC
TTTCCCTACGCTTCGTCGCCGCCGAAGGCAAAGGCTGGGGATGTCCTCTA
CCTCCTGCACACGTTCCCACCACCAGCGACGCCAACCATGTTTTTAAGTA
CCTTGGTGCTGCGTTTGTTGACCCATTTTCGGGTGCTATCAAGACTCAAC
GAGGCCTTACTATCTCCCTGTTGGTGCTTGATGAGGATGGAGAAGAATAC
GGGAGATTGGATAACCCTCGTCCATGGCCCGGGGGGGGCGTGTATTTTTT
TGAGGGTGTGACTCTCCCCAAGAAGGGGCTGTGGACGTTGCGGTTGACAG
CTAAGGAGACGATACCCGGAGGAAGGGGAGGGGTAGGAAGGAGGGAAGAT
GGGGAGATGGTGCTGCAGGGGGAGGTTGTGGGTCAGCGGGCAGTCATCCT
GTTGGGAAACGGTGGTCGAAAAGAGAAGGAGGAGGAAGGAAGGGAGGAAG
GGGTGAAGGCCAACGTCACCTCCACCAAAAGCACGACGGACGACAAGGAG
AACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTCCTTT
CCTTTTAAACCTGCCCAAGGGCGTCTCTCTCGGCCTGGGGGATGCACCTG
TAATTGCTCTGGATTACTTAGGCCCCCGTTTGAACACCGGGAGGAAAAGC
ACTTACGGCAGCAGCAGCAACAGCAGCAGTACGACAAACACCTCTCTCAA
TAGCTGCAGCACCAGCAGCACCAGCAGCAGCAGCGGCAGTCATGGGAAGA
GCAAATCACTGTTGCCTCGTCGTGCATGCAACAGAGAGGACTTGATTTTG
GCGTTAGCGTTGACGCAAGTACACGAGGACGAGGAAGGCGGAGGGAGGGA
GGGAGGGGCAGGAGGGAGGAAGCGGAAGGCAGATGGAGGCGGAGGAGGGG
AGGGAGGAGGAGGAGGAGGAGGAAAAGGAAGGGGGGAGATAATGGCGGCT
CAGAAGGCGCTGTTAAAGAAGTGGAAAAATGTGCCGCGGGATTGTCGATG
GATGGAGTGGGAGGCATTGAGGGAAGGGAGGACGGGTGTAGTGTTTGAAA
GGCGAGAGTGGTGGAGGGGGCTAGTGGGATTGATGGAATGGAAGAAACCG
AGAGGAGAAGGAGGCGGGGTAGGGAGGGAGGGAGGAAGGGAGGGGGGGAG
GATCATTACTGAGTGAGAAAAGAGGAGAAAACTTCACAGTCCCTTTTCGG
GCGGTTGTTGCCTTGTTGGAATGGGGGGAGGGAGGGAGGGAGGCTGTTGC
ATGTGTATCGTGTGTGCCCTCGAGGAAAGGAGTGCGAGTGAGGTCAAGGG
TCATGATCGAGGGTCATGGTGGAATCTAGGGTGAGGGGTAGCGGAGTGGG
TGTCGACCAGTAAGGAAGGGGAGTACGGAGTTCGAGTGACTGCGATTGAT
TGCGGCCACTGCACCGCAGAGAGAGGGGAAAGAAAAAGAAGCAAGGTAAG
AAAAGAGAGACGAAAAATACTCCTGGT
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protein sequence of NO18G02310.1

>NO18G02310.1-protein ID=NO18G02310.1-protein|Name=NO18G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MAGTTNATIASNIDSSSNSSSNSSSNSTGSSSSNSSTGTSSKNKRVTTNS
SSPASETTSLRSTRRSARGSISVPPSSSTGTSTTNTASCESTECLPPDEN
HAPAPPLPHTLQCPPHTQQPPPTRTSRLEVLKGLSLRFVAAEGKGWGCPL
PPAHVPTTSDANHVFKYLGAAFVDPFSGAIKTQRGLTISLLVLDEDGEEY
GRLDNPRPWPGGGVYFFEGVTLPKKGLWTLRLTAKETIPGGRGGVGRRED
GEMVLQGEVVGQRAVILLGNGGRKEKEEEGREEGVKANVTSTKSTTDDKE
NSSSSSSSSSSSSSFPFLLNLPKGVSLGLGDAPVIALDYLGPRLNTGRKS
TYGSSSNSSSTTNTSLNSCSTSSTSSSSGSHGKSKSLLPRRACNREDLIL
ALALTQVHEDEEGGGREGGAGGRKRKADGGGGGEGGGGGGGKGRGEIMAA
QKALLKKWKNVPRDCRWMEWEALREGRTGVVFERREWWRGLVGLMEWKKP
RGEGGGVGREGGREGGRIITE*
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Synonyms
Publications