NO18G00340, NO18G00340 (gene) Nannochloropsis oceanica

Overview
NameNO18G00340
Unique NameNO18G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3583
Alignment locationchr18:142995..146577 +

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Properties
Property NameValue
DescriptionPeptidylprolyl isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:142995..146577 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001179PPIase_FKBP_dom
Homology
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BLAST of NO18G00340 vs. NCBI_GenBank
Match: GAX13282.1 (hypothetical protein FisN_17Hh222 [Fistulifera solaris])

HSP 1 Score: 94.4 bits (233), Expect = 6.200e-16
Identity = 85/256 (33.20%), Postives = 125/256 (48.83%), Query Frame = 0 
Query:   35 PSPTASTLLAKMTAHQDINDA--YSRHAILSSSSAALFPFLLLSFLPSPSRALVKGNAPPKDMRKKSGGKPATANMDEAMEMGRKKEQEMFDKQEEEGGSDI--QRTAEGDRYRDTVLPPSPSVPLKKGDTCSIRYRALRLGKRSRDGLSGEASTVFSYGYGEDDD--KEGDAMEVTL-GKSNLIPALEAGLVGMQVGGKRRVLVRPERGWFK-GKGC--GVLDDADVSNLAAAFI-VPGTKITDTEDCLDLTRIP 280
            P P   T L     + ++ DA  ++R  + +++S  L        + +P+ ALVKGNAPP  +      KP   N++E      K+EQ    ++E    S++  + T  G +Y D  +       +  GD   + Y+ L+LGKRS DG+SGE + VFS GYG +DD  K G    VT+ G  N I AL   L+GM+  G RR+ V P+ GW K G+ C  G         L   ++ VP   +   E C D T+ P
Sbjct:   26 PRPKNPTSLFTNINNDELTDAGYWTRRDLFAAASVML--------VATPANALVKGNAPPPKISVTD--KPKCTNVEECQAAAEKREQA---ERELAAASEVSYKITPSGIKYID--IKEGNGDLVADGDEVELFYKVLKLGKRSYDGISGEGTVVFSRGYGLEDDESKPGVKTFVTIVGGYNNIRALNNALIGMRESGVRRIAVFPQDGWRKPGRECDGGPGGSGKGGELKTDYVLVPTATMVAAEACFDSTKQP 266
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BLAST of NO18G00340 vs. NCBI_GenBank
Match: EWM23235.1 (hypothetical protein Naga_100967g2 [Nannochloropsis gaditana])

HSP 1 Score: 84.3 bits (207), Expect = 6.400e-13
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0 
Query:   26 PSLLSAFIL-PS-PTASTL-LAKMTAHQDINDAYSRHAILSSSSAALFPFLLLSFLPSPSRALVKGNAPPKDMRKKSGGKPATANMDEAMEMGRKK 119
            P+L  AF L PS P A  L L    AH      ++RHA LS++S+AL P LLL   PSPS ALVKGNAPPKDMRKK+GGK   ANMDEA+E GRK+
Sbjct:  137 PALALAFRLRPSHPKARGLSLCLKAAHP--APLHTRHAFLSTTSSALVPVLLLPSFPSPSLALVKGNAPPKDMRKKTGGKSTAANMDEAIEAGRKR 230
[Close]
BLAST of NO18G00340 vs. NCBI_GenBank
Match: XP_005854871.1 (hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526] >EKU21479.1 hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 63.9 bits (154), Expect = 8.900e-7
Identity = 45/134 (33.58%), Postives = 69/134 (51.49%), Query Frame = 0 
Query:  107 NMDEAMEMGRKKEQEMFDKQEEEGGSDIQRTAEGDRYRDTVLPPSPSVPLKKGDTCSIRYRALRLGKRSRDGLSGEASTVFSYGYGEDDDKE-GDAMEVTLGKSNLIP-ALEAGLVGMQVGGKRRVLVRPERGW 239
            N++EA E+G KK   M D ++ +G   + +  +  +YR+ ++        K GD   IRY+  +          G    +FS GYG +   + GD  + T G+ N IP   E G+ GM+VGGKR++ V PE GW
Sbjct:  104 NLEEARELGEKK---MIDIEKAKG--PLIKVRDNVKYREELIGKGDI--FKAGDLVKIRYQVYK----------GNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGW 220
[Close]
BLAST of NO18G00340 vs. NCBI_GenBank
Match: EWM28541.1 (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana])

HSP 1 Score: 63.9 bits (154), Expect = 8.900e-7
Identity = 45/134 (33.58%), Postives = 69/134 (51.49%), Query Frame = 0 
Query:  107 NMDEAMEMGRKKEQEMFDKQEEEGGSDIQRTAEGDRYRDTVLPPSPSVPLKKGDTCSIRYRALRLGKRSRDGLSGEASTVFSYGYGEDDDKE-GDAMEVTLGKSNLIP-ALEAGLVGMQVGGKRRVLVRPERGW 239
            N++EA E+G KK   M D ++ +G   + +  +  +YR+ ++        K GD   IRY+  +          G    +FS GYG +   + GD  + T G+ N IP   E G+ GM+VGGKR++ V PE GW
Sbjct:  104 NLEEARELGEKK---MIDIEKAKG--PLIKVRDNVKYREELIGKGDI--FKAGDLVKIRYQVYK----------GNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGW 220
The following BLAST results are available for this feature:
BLAST of NO18G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
GAX13282.16.200e-1633.20hypothetical protein FisN_17Hh222 [Fistulifera sol... [more]
EWM23235.16.400e-1359.38hypothetical protein Naga_100967g2 [Nannochloropsi... [more]
XP_005854871.18.900e-733.58hypothetical protein NGA_0377200 [Nannochloropsis ... [more]
EWM28541.18.900e-733.58peptidyl-prolyl cis-trans fkbp-type [Nannochlorops... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00340.1NO18G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G00340.2NO18G00340.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605570gene_9809Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100967g2gene7214Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00340.1NO18G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G00340.2NO18G00340.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00340 ID=NO18G00340|Name=NO18G00340|organism=Nannochloropsis oceanica|type=gene|length=3583bp
CATGATTAGAATATGTGTGACTGTGTTGTCGTGTGGCATGGATGATTTTG
AGTGGTTTAGGGTGGAGTGAGTCACAGACGTCTGTGTATGTGGATGGAAG
TGCGTGGCTTGGAGAGTGTCGAAGCCAAGCTTCTCAAAGGCACGTGCGGC
CACAGAGCGGTTGGTGGGATGAGAGCTGTGGAGTGAGGACGATAGGTGCA
CATTTAGGTTGGGGTCCAGGCGTTGGCATGGGCGCCAGGAAAGGGTGCTG
GTGTGTGGTTTAGCGGATGCGGTGGTGGATGCACGCACGCTGGGTAAACA
CCAGGTAACAACACGGCAAAGAGGGGGGTGTCCGCGGTCGGGTGCGAGGG
GGAGCAGACGGAAGGGGCACCTGCAAGGTGAAGAGGGTGGATGTGCAGTG
GTGGTCGCAGTGTGGCAGAGATCGAAAATGTGCCCAATCCCAAAACAGAC
GGAGGGGACAATACAAAAGTCTGACTCGTTCGACCATGAACACGGCAACA
AGCGAGAGAGGAGGTCAATAGGAACACGCACTTGCTTTTGCATGCACACG
CCGGCCACGCGCCCGATCGAGAGGTAGGGCCAAAATACCGTCACAGATAT
CCAGCAAATAGGCATGCATACATGAGTACAATGCGATGGATCATGGATGG
ACATTTTGGCAGTCGGTCATCACGCAATGCATGCAAAAACAGCCTTTAAA
GACTTTCCGACCCAGTCAGACGAGCGACACGGAACAATCGTGACGGTCCG
CTCACTGAGACCTGAGGTGGTGCGTTGGCCTTCGAATCGAAGGCCAAGAT
TCGTTCTTGGCTCGGACAGGGGCCAAAAAGTCCGCTATGGGAGCTAGTAA
CGAGTGAGACTGCAATGGAATTTAGAATGATATGCGGGGTGCTTGCGTGC
TCCAAAGTCCAGCAGGTGGACAGGCGTGTGTTAAACAGAGGTCTGGTGGT
GGGCCGAGAGGTGGAAAATGGGAAAACGTTGCTCCATGTTTCGTCACGGC
GGTCACTCAGGAACGCAGCGTCCTCCATCGTGGCCGCTTGTTTGATACAG
CCCGCTGCCCTTGCGAGGTCATACGACGTGCCTCGCACATTACAAACTTA
ATGCTTTTTTCTGTTAGGTACCATACACAGGGGCAAGGCAGAAACCATGT
CATCATCAAGATCCAACCAGCACCGCTCAACCTCCCTCCTTCTCCTGCTT
GCCCTCCTCCTGCTGTTGTCGCCCTCCCTCCTCTCCGCCTTCATCCTCCC
TTCACCTACTGCATCCACCCTCCTCGCAAAAATGACCGCCCACCAAGACA
TCAACGACGCCTACAGTCGGCACGCAATCCTATCTTCTTCGTCTGCAGCC
CTATTCCCTTTTCTCCTCCTCTCCTTCCTTCCCTCTCCGTCCCGTGCTTT
GGTCAAGGGGAATGCCCCTCCCAAAGACATGCGCAAAAAGAGTGGCGGCA
AGCCAGCCACAGCGAACATGGACGAAGCCATGGAGATGGGGAGAAAGAAG
gtgagggaggatgggagagggagggaaagagacagcggcaacacgtaata
ggtatgcccgctaacctcctcctccttgttccagGAACAAGAGATGTTCG
ACAAGCAAGAAGAAGAGGGCGGCAGCGACATCCAAAGAACAGCAGAGGgt
cagtgggtggtcttttcttgtggctcttccatcctcctggtgtccctacc
tccccccttccccacctttcccccccttcttgacctctagtagctcgtta
acgcgcctttcttttccccttccctccccagGCGACCGGTACAGGGACAC
CGTCCTCCCTCCCTCCCCTTCCGTACCCTTGAAAAAGGGCGACACCTGCT
CCATCCGGTACCGTGCCTTGAGACTGGGGAAGCGGAGTAGGGATGGGCTG
TCAGGGGAGGCAAGCACAGTCTTTTCCTACGGGTACGGCGAAGACGACGA
CAAgtacgtaggctttcccctcctccccttcctccctcccttcccccttt
tctctctcttctactctgtctccgccttcttgcatgtccttcttgcgtga
tggatcggcctcgccctggtgcagctccggcatggacggtagggccatcg
agtggggtggatgggaatatcggacgaggaagataggtatggatggtagg
atagcatggacgagtaagtcagatattggccgccctatcgccgcctgcat
gtgtgcggcgggtacgtgtgtcatgttttcgcgcgaccgctcaccaccct
ccccctcctcactatgctccttcctgacccgtgtcctcagcagtacctcc
cccccgtcgcatggcttcacactccttttctctcatcccctcccccacgc
cctctccccctccttccttttgtcccctcctacagAGAAGGAGATGCCAT
GGAGGTCACGTTGGGAAAGTCCAACCTCATCCCAGCTCTCGgtaagcagc
actgagcaggaaaggaagggaaggagggagtaagggagggagtaagtttt
gctcgagaagaaggaatcctcattcggtgcacaactgttcgtcgagttgc
tgatctttccctccctccctccctccctccctccctccctccctccctcc
ctccctccctccttccctccctccctcctctcttcctacctcttccccct
taatccttctacgtcagAGGCCGGGCTGGTGGGCATGCAAGTGGGAGGGA
AACGCCGTGTGTTGGTCCGACCGGAACGGGGGTGGTTCAAGGGCAAGgtg
agaaaagaatgaggaaaggagggagagagagagggagggagggagggagg
gagggaaggaggggttagtgggcatgcaggtgagaagtgggaggaaggag
ggagggaagaaaggaaggaggggaaggtgctgggcctgactcggccagtg
tccgtctttcctcccgtccttcagttcaacggcctttccaagagtgcatg
gacacctttagtgctgctccttcactccctccctcccccctccccccctt
cctccctccgttcctccctccctagGGCTGCGGGGTCCTGGACGACGCAG
ACGTCAGCAATTTGGCAGCTGCCTTTATTGTGCCTGGAACGAAAATCACC
GACACAGAAGATTGCCTCGACTTGACCCGCATTCCCAGGTGAGTTTTCAC
TGCCCAACACTATCCCTCCTTCCGCCCTCCCTCCCTCCCCATCCCCCTTG
CCTCCCTAATTGTTTCCTCTTATTCTTTCCTTTACCGTTTCCTGTCCCCT
CACTTTTAAAATCATGAACGAGAGCCTCTTTCATCCCCTTTGTCCCCCAA
TATGGTATGCCTCACATTTCCTTCCTCGTCTTCTCTCATCCCCCCTCCTT
CCCTCCAGCCCCACCTCCTACGCCGCGCGGCGTCGGATGGGGAGACGGTT
CGACGAGTCATTGATTGTGGAAGTAGAGCTCGTCAAGTAACCGAGCGGAG
GGAGAAGGAGAGGACAAGGGATGAAAGAAAGATTAAATTGGCGGTAAAAG
AAGATATGAAACGAGGAAGTAACACATAGTCGAGGAGAAATTCACTAAAC
ATGGGAGAAATCGTCAACTTATGGTACCATTGC
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protein sequence of NO18G00340.1

>NO18G00340.1-protein ID=NO18G00340.1-protein|Name=NO18G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MSSSRSNQHRSTSLLLLLALLLLLSPSLLSAFILPSPTASTLLAKMTAHQ
DINDAYSRHAILSSSSAALFPFLLLSFLPSPSRALVKGNAPPKDMRKKSG
GKPATANMDEAMEMGRKKEQEMFDKQEEEGGSDIQRTAEGDRYRDTVLPP
SPSVPLKKGDTCSIRYRALRLGKRSRDGLSGEASTVFSYGYGEDDDKEGD
AMEVTLGKSNLIPALEAGLVGMQVGGKRRVLVRPERGWFKGKGCGVLDDA
DVSNLAAAFIVPGTKITDTEDCLDLTRIPSPTSYAARRRMGRRFDESLIV
EVELVK*
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protein sequence of NO18G00340.2

>NO18G00340.2-protein ID=NO18G00340.2-protein|Name=NO18G00340.2|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MSSSRSNQHRSTSLLLLLALLLLLSPSLLSAFILPSPTASTLLAKMTAHQ
DINDAYSRHAILSSSSAALFPFLLLSFLPSPSRALVKGNAPPKDMRKKSG
GKPATANMDEAMEMGRKKEQEMFDKQEEEGGSDIQRTAEGDRYRDTVLPP
SPSVPLKKGDTCSIRYRALRLGKRSRDGLSGEASTVFSYGYGEDDDKEGD
AMEVTLGKSNLIPALEAGLVGMQVGGKRRVLVRPERGWFKGKGCGVLDDA
DVSNLAAAFIVPGTKITDTEDCLDLTRIPR*
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Synonyms
Publications