NO18G00340.1, NO18G00340.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G00340.1
Unique Name	NO18G00340.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2210
Alignment location	chr18:142995..146577 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:142995..146577 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G00340.1 vs.
Match: XP_005833744.1 (hypothetical protein GUITHDRAFT_70395 [Guillardia theta CCMP2712]; EKX46764.1 hypothetical protein GUITHDRAFT_70395 [Guillardia theta CCMP2712])

HSP 1 Score: 199.5 bits (506), Expect = 1.500e-47
Identity = 112/230 (48.70%), Postives = 150/230 (65.22%), Query Frame = 0

Query:   78 LPSPSRALVKGNAPPKDM-RKKSGGKPATANMDEAMEMGRKKEQEMFDKQEEEGGSDIQRTAEGDRYRDTVLPPSPSVPLKKGDTCSIRYRALRLGKRSRDGLSGEASTVFSYGYGEDDDKEGDAMEVTLGKSNLIPALEAGLVGMQVGGKRRVLVRPERGWFKGKGCGVLDDADVSNLAAAFIVPGTKITDTEDCLDLTRIPSPTSYAARRRMGRRFDESLIVEVELVK 307
            LP  ++ALVKG APP D  +KK        N+ EA E G ++E  +FDKQ+     +   T EGDRYRD  +     V  K G    I+YR LRLGKRSRDGLSGEAS VFSYGYGEDDDKE D ++  +G++NLI AL + L GM+ GG RR+ V+PERGW K +    +   D+    +A  +PG  +T+ E CLD  R+PSP ++ A+R++ RRFDE+L++EVE++K
Sbjct:    6 LPPNAQALVKGIAPPPDFGKKKDLPTKKITNIQEAQEYGAQREATLFDKQD----GNFSVTKEGDRYRDVRIGTGAEV--KPGSEVEIKYRVLRLGKRSRDGLSGEASLVFSYGYGEDDDKETDTLKFVVGEANLINALSSSLPGMKQGGLRRISVKPERGW-KLEDASCVKSVDI---GSAVGLPGGAVTEAETCLDYFRVPSPATFQAKRKLSRRFDENLLMEVEVIK 225

The following BLAST results are available for this feature:

BLAST of NO18G00340.1 vs.

BLAST of NO18G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005833744.1	1.500e-47	48.70	hypothetical protein GUITHDRAFT_70395 [Guillardia ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G00340	NO18G00340	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00340.1	NO18G00340.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00340.1.cds1	NO18G00340.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00340.1.cds2	NO18G00340.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00340.1.cds3	NO18G00340.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00340.1.cds4	NO18G00340.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00340.1.cds5	NO18G00340.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00340.1.cds6	NO18G00340.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00340.1.cds7	NO18G00340.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:142995..146577+
coding sequence from alignment at chr18:142995..146577+

mRNA sequence

>NO18G00340.1 ID=NO18G00340.1|Name=NO18G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2210bp
CATGATTAGAATATGTGTGACTGTGTTGTCGTGTGGCATGGATGATTTTG
AGTGGTTTAGGGTGGAGTGAGTCACAGACGTCTGTGTATGTGGATGGAAG
TGCGTGGCTTGGAGAGTGTCGAAGCCAAGCTTCTCAAAGGCACGTGCGGC
CACAGAGCGGTTGGTGGGATGAGAGCTGTGGAGTGAGGACGATAGGTGCA
CATTTAGGTTGGGGTCCAGGCGTTGGCATGGGCGCCAGGAAAGGGTGCTG
GTGTGTGGTTTAGCGGATGCGGTGGTGGATGCACGCACGCTGGGTAAACA
CCAGGTAACAACACGGCAAAGAGGGGGGTGTCCGCGGTCGGGTGCGAGGG
GGAGCAGACGGAAGGGGCACCTGCAAGGTGAAGAGGGTGGATGTGCAGTG
GTGGTCGCAGTGTGGCAGAGATCGAAAATGTGCCCAATCCCAAAACAGAC
GGAGGGGACAATACAAAAGTCTGACTCGTTCGACCATGAACACGGCAACA
AGCGAGAGAGGAGGTCAATAGGAACACGCACTTGCTTTTGCATGCACACG
CCGGCCACGCGCCCGATCGAGAGGTAGGGCCAAAATACCGTCACAGATAT
CCAGCAAATAGGCATGCATACATGAGTACAATGCGATGGATCATGGATGG
ACATTTTGGCAGTCGGTCATCACGCAATGCATGCAAAAACAGCCTTTAAA
GACTTTCCGACCCAGTCAGACGAGCGACACGGAACAATCGTGACGGTCCG
CTCACTGAGACCTGAGGTGGTGCGTTGGCCTTCGAATCGAAGGCCAAGAT
TCGTTCTTGGCTCGGACAGGGGCCAAAAAGTCCGCTATGGGAGCTAGTAA
CGAGTGAGACTGCAATGGAATTTAGAATGATATGCGGGGTGCTTGCGTGC
TCCAAAGTCCAGCAGGTGGACAGGCGTGTGTTAAACAGAGGTCTGGTGGT
GGGCCGAGAGGTGGAAAATGGGAAAACGTTGCTCCATGTTTCGTCACGGC
GGTCACTCAGGAACGCAGCGTCCTCCATCGTGGCCGCTTGTTTGATACAG
CCCGCTGCCCTTGCGAGGTCATACGACGTGCCTCGCACATTACAAACTTA
ATGCTTTTTTCTGTTAGGTACCATACACAGGGGCAAGGCAGAAACCATGT
CATCATCAAGATCCAACCAGCACCGCTCAACCTCCCTCCTTCTCCTGCTT
GCCCTCCTCCTGCTGTTGTCGCCCTCCCTCCTCTCCGCCTTCATCCTCCC
TTCACCTACTGCATCCACCCTCCTCGCAAAAATGACCGCCCACCAAGACA
TCAACGACGCCTACAGTCGGCACGCAATCCTATCTTCTTCGTCTGCAGCC
CTATTCCCTTTTCTCCTCCTCTCCTTCCTTCCCTCTCCGTCCCGTGCTTT
GGTCAAGGGGAATGCCCCTCCCAAAGACATGCGCAAAAAGAGTGGCGGCA
AGCCAGCCACAGCGAACATGGACGAAGCCATGGAGATGGGGAGAAAGAAG
GAACAAGAGATGTTCGACAAGCAAGAAGAAGAGGGCGGCAGCGACATCCA
AAGAACAGCAGAGGGCGACCGGTACAGGGACACCGTCCTCCCTCCCTCCC
CTTCCGTACCCTTGAAAAAGGGCGACACCTGCTCCATCCGGTACCGTGCC
TTGAGACTGGGGAAGCGGAGTAGGGATGGGCTGTCAGGGGAGGCAAGCAC
AGTCTTTTCCTACGGGTACGGCGAAGACGACGACAAAGAAGGAGATGCCA
TGGAGGTCACGTTGGGAAAGTCCAACCTCATCCCAGCTCTCGAGGCCGGG
CTGGTGGGCATGCAAGTGGGAGGGAAACGCCGTGTGTTGGTCCGACCGGA
ACGGGGGTGGTTCAAGGGCAAGGGCTGCGGGGTCCTGGACGACGCAGACG
TCAGCAATTTGGCAGCTGCCTTTATTGTGCCTGGAACGAAAATCACCGAC
ACAGAAGATTGCCTCGACTTGACCCGCATTCCCAGCCCCACCTCCTACGC
CGCGCGGCGTCGGATGGGGAGACGGTTCGACGAGTCATTGATTGTGGAAG
TAGAGCTCGTCAAGTAACCGAGCGGAGGGAGAAGGAGAGGACAAGGGATG
AAAGAAAGATTAAATTGGCGGTAAAAGAAGATATGAAACGAGGAAGTAAC
ACATAGTCGAGGAGAAATTCACTAAACATGGGAGAAATCGTCAACTTATG
GTACCATTGC

protein sequence of NO18G00340.1

>NO18G00340.1-protein ID=NO18G00340.1-protein|Name=NO18G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MSSSRSNQHRSTSLLLLLALLLLLSPSLLSAFILPSPTASTLLAKMTAHQ
DINDAYSRHAILSSSSAALFPFLLLSFLPSPSRALVKGNAPPKDMRKKSG
GKPATANMDEAMEMGRKKEQEMFDKQEEEGGSDIQRTAEGDRYRDTVLPP
SPSVPLKKGDTCSIRYRALRLGKRSRDGLSGEASTVFSYGYGEDDDKEGD
AMEVTLGKSNLIPALEAGLVGMQVGGKRRVLVRPERGWFKGKGCGVLDDA
DVSNLAAAFIVPGTKITDTEDCLDLTRIPSPTSYAARRRMGRRFDESLIV
EVELVK*

mRNA from alignment at chr18:142995..146577+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G00340.1 ID=NO18G00340.1|Name=NO18G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=3583bp|location=Sequence derived from alignment at chr18:142995..146577+ (Nannochloropsis oceanica)
CATGATTAGAATATGTGTGACTGTGTTGTCGTGTGGCATGGATGATTTTG
AGTGGTTTAGGGTGGAGTGAGTCACAGACGTCTGTGTATGTGGATGGAAG
TGCGTGGCTTGGAGAGTGTCGAAGCCAAGCTTCTCAAAGGCACGTGCGGC
CACAGAGCGGTTGGTGGGATGAGAGCTGTGGAGTGAGGACGATAGGTGCA
CATTTAGGTTGGGGTCCAGGCGTTGGCATGGGCGCCAGGAAAGGGTGCTG
GTGTGTGGTTTAGCGGATGCGGTGGTGGATGCACGCACGCTGGGTAAACA
CCAGGTAACAACACGGCAAAGAGGGGGGTGTCCGCGGTCGGGTGCGAGGG
GGAGCAGACGGAAGGGGCACCTGCAAGGTGAAGAGGGTGGATGTGCAGTG
GTGGTCGCAGTGTGGCAGAGATCGAAAATGTGCCCAATCCCAAAACAGAC
GGAGGGGACAATACAAAAGTCTGACTCGTTCGACCATGAACACGGCAACA
AGCGAGAGAGGAGGTCAATAGGAACACGCACTTGCTTTTGCATGCACACG
CCGGCCACGCGCCCGATCGAGAGGTAGGGCCAAAATACCGTCACAGATAT
CCAGCAAATAGGCATGCATACATGAGTACAATGCGATGGATCATGGATGG
ACATTTTGGCAGTCGGTCATCACGCAATGCATGCAAAAACAGCCTTTAAA
GACTTTCCGACCCAGTCAGACGAGCGACACGGAACAATCGTGACGGTCCG
CTCACTGAGACCTGAGGTGGTGCGTTGGCCTTCGAATCGAAGGCCAAGAT
TCGTTCTTGGCTCGGACAGGGGCCAAAAAGTCCGCTATGGGAGCTAGTAA
CGAGTGAGACTGCAATGGAATTTAGAATGATATGCGGGGTGCTTGCGTGC
TCCAAAGTCCAGCAGGTGGACAGGCGTGTGTTAAACAGAGGTCTGGTGGT
GGGCCGAGAGGTGGAAAATGGGAAAACGTTGCTCCATGTTTCGTCACGGC
GGTCACTCAGGAACGCAGCGTCCTCCATCGTGGCCGCTTGTTTGATACAG
CCCGCTGCCCTTGCGAGGTCATACGACGTGCCTCGCACATTACAAACTTA
ATGCTTTTTTCTGTTAGGTACCATACACAGGGGCAAGGCAGAAACCATGT
CATCATCAAGATCCAACCAGCACCGCTCAACCTCCCTCCTTCTCCTGCTT
GCCCTCCTCCTGCTGTTGTCGCCCTCCCTCCTCTCCGCCTTCATCCTCCC
TTCACCTACTGCATCCACCCTCCTCGCAAAAATGACCGCCCACCAAGACA
TCAACGACGCCTACAGTCGGCACGCAATCCTATCTTCTTCGTCTGCAGCC
CTATTCCCTTTTCTCCTCCTCTCCTTCCTTCCCTCTCCGTCCCGTGCTTT
GGTCAAGGGGAATGCCCCTCCCAAAGACATGCGCAAAAAGAGTGGCGGCA
AGCCAGCCACAGCGAACATGGACGAAGCCATGGAGATGGGGAGAAAGAAG
GTGAGGGAGGATGGGAGAGGGAGGGAAAGAGACAGCGGCAACACGTAATA
GGTATGCCCGCTAACCTCCTCCTCCTTGTTCCAGGAACAAGAGATGTTCG
ACAAGCAAGAAGAAGAGGGCGGCAGCGACATCCAAAGAACAGCAGAGGGT
CAGTGGGTGGTCTTTTCTTGTGGCTCTTCCATCCTCCTGGTGTCCCTACC
TCCCCCCTTCCCCACCTTTCCCCCCCTTCTTGACCTCTAGTAGCTCGTTA
ACGCGCCTTTCTTTTCCCCTTCCCTCCCCAGGCGACCGGTACAGGGACAC
CGTCCTCCCTCCCTCCCCTTCCGTACCCTTGAAAAAGGGCGACACCTGCT
CCATCCGGTACCGTGCCTTGAGACTGGGGAAGCGGAGTAGGGATGGGCTG
TCAGGGGAGGCAAGCACAGTCTTTTCCTACGGGTACGGCGAAGACGACGA
CAAGTACGTAGGCTTTCCCCTCCTCCCCTTCCTCCCTCCCTTCCCCCTTT
TCTCTCTCTTCTACTCTGTCTCCGCCTTCTTGCATGTCCTTCTTGCGTGA
TGGATCGGCCTCGCCCTGGTGCAGCTCCGGCATGGACGGTAGGGCCATCG
AGTGGGGTGGATGGGAATATCGGACGAGGAAGATAGGTATGGATGGTAGG
ATAGCATGGACGAGTAAGTCAGATATTGGCCGCCCTATCGCCGCCTGCAT
GTGTGCGGCGGGTACGTGTGTCATGTTTTCGCGCGACCGCTCACCACCCT
CCCCCTCCTCACTATGCTCCTTCCTGACCCGTGTCCTCAGCAGTACCTCC
CCCCCGTCGCATGGCTTCACACTCCTTTTCTCTCATCCCCTCCCCCACGC
CCTCTCCCCCTCCTTCCTTTTGTCCCCTCCTACAGAGAAGGAGATGCCAT
GGAGGTCACGTTGGGAAAGTCCAACCTCATCCCAGCTCTCGGTAAGCAGC
ACTGAGCAGGAAAGGAAGGGAAGGAGGGAGTAAGGGAGGGAGTAAGTTTT
GCTCGAGAAGAAGGAATCCTCATTCGGTGCACAACTGTTCGTCGAGTTGC
TGATCTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCTTCCCTCCCTCCCTCCTCTCTTCCTACCTCTTCCCCCT
TAATCCTTCTACGTCAGAGGCCGGGCTGGTGGGCATGCAAGTGGGAGGGA
AACGCCGTGTGTTGGTCCGACCGGAACGGGGGTGGTTCAAGGGCAAGGTG
AGAAAAGAATGAGGAAAGGAGGGAGAGAGAGAGGGAGGGAGGGAGGGAGG
GAGGGAAGGAGGGGTTAGTGGGCATGCAGGTGAGAAGTGGGAGGAAGGAG
GGAGGGAAGAAAGGAAGGAGGGGAAGGTGCTGGGCCTGACTCGGCCAGTG
TCCGTCTTTCCTCCCGTCCTTCAGTTCAACGGCCTTTCCAAGAGTGCATG
GACACCTTTAGTGCTGCTCCTTCACTCCCTCCCTCCCCCCTCCCCCCCTT
CCTCCCTCCGTTCCTCCCTCCCTAGGGCTGCGGGGTCCTGGACGACGCAG
ACGTCAGCAATTTGGCAGCTGCCTTTATTGTGCCTGGAACGAAAATCACC
GACACAGAAGATTGCCTCGACTTGACCCGCATTCCCAGGTGAGTTTTCAC
TGCCCAACACTATCCCTCCTTCCGCCCTCCCTCCCTCCCCATCCCCCTTG
CCTCCCTAATTGTTTCCTCTTATTCTTTCCTTTACCGTTTCCTGTCCCCT
CACTTTTAAAATCATGAACGAGAGCCTCTTTCATCCCCTTTGTCCCCCAA
TATGGTATGCCTCACATTTCCTTCCTCGTCTTCTCTCATCCCCCCTCCTT
CCCTCCAGCCCCACCTCCTACGCCGCGCGGCGTCGGATGGGGAGACGGTT
CGACGAGTCATTGATTGTGGAAGTAGAGCTCGTCAAGTAACCGAGCGGAG
GGAGAAGGAGAGGACAAGGGATGAAAGAAAGATTAAATTGGCGGTAAAAG
AAGATATGAAACGAGGAAGTAACACATAGTCGAGGAGAAATTCACTAAAC
ATGGGAGAAATCGTCAACTTATGGTACCATTGC

Coding sequence (CDS) from alignment at chr18:142995..146577+

>NO18G00340.1 ID=NO18G00340.1|Name=NO18G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr18:142995..146577+ (Nannochloropsis oceanica)
ATGTCATCATCAAGATCCAACCAGCACCGCTCAACCTCCCTCCTTCTCCT
GCTTGCCCTCCTCCTGCTGTTGTCGCCCTCCCTCCTCTCCGCCTTCATCC
TCCCTTCACCTACTGCATCCACCCTCCTCGCAAAAATGACCGCCCACCAA
GACATCAACGACGCCTACAGTCGGCACGCAATCCTATCTTCTTCGTCTGC
AGCCCTATTCCCTTTTCTCCTCCTCTCCTTCCTTCCCTCTCCGTCCCGTG
CTTTGGTCAAGGGGAATGCCCCTCCCAAAGACATGCGCAAAAAGAGTGGC
GGCAAGCCAGCCACAGCGAACATGGACGAAGCCATGGAGATGGGGAGAAA
GAAGGAACAAGAGATGTTCGACAAGCAAGAAGAAGAGGGCGGCAGCGACA
TCCAAAGAACAGCAGAGGGCGACCGGTACAGGGACACCGTCCTCCCTCCC
TCCCCTTCCGTACCCTTGAAAAAGGGCGACACCTGCTCCATCCGGTACCG
TGCCTTGAGACTGGGGAAGCGGAGTAGGGATGGGCTGTCAGGGGAGGCAA
GCACAGTCTTTTCCTACGGGTACGGCGAAGACGACGACAAAGAAGGAGAT
GCCATGGAGGTCACGTTGGGAAAGTCCAACCTCATCCCAGCTCTCGAGGC
CGGGCTGGTGGGCATGCAAGTGGGAGGGAAACGCCGTGTGTTGGTCCGAC
CGGAACGGGGGTGGTTCAAGGGCAAGGGCTGCGGGGTCCTGGACGACGCA
GACGTCAGCAATTTGGCAGCTGCCTTTATTGTGCCTGGAACGAAAATCAC
CGACACAGAAGATTGCCTCGACTTGACCCGCATTCCCAGCCCCACCTCCT
ACGCCGCGCGGCGTCGGATGGGGAGACGGTTCGACGAGTCATTGATTGTG
GAAGTAGAGCTCGTCAAGTAA

Synonyms

Publications