NO17G01990, NO17G01990 (gene) Nannochloropsis oceanica

Overview
NameNO17G01990
Unique NameNO17G01990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length435
Alignment locationchr17:569376..569810 +

Link to JBrowse

Properties
Property NameValue
DescriptionImportin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:569376..569810 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
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BLAST of NO17G01990 vs. NCBI_GenBank
Match: EWM29045.1 (importin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 216.9 bits (551), Expect = 4.300e-53
Identity = 109/144 (75.69%), Postives = 123/144 (85.42%), Query Frame = 0 
Query:    1 MAVVLVGRIVDIRHESWQSMPAALKAAVRQGLWHNFTHETDPELVRKLSHAVARASEGWKDLVAASIGLLGSTNDQARQVGVFFLLEQMSEYSDELKSDPGRLLPVFQAALVDDMTLSVRCGALKALLSLLNHIETRAAVINGG 145
            + VVLVGRIVD+R E+WQ+M  + K AVRQGLWHNFT E+DPELVRKLSHAVARASEGW DLVAAS+ LLG TND+ARQVGVFFLLEQMSEYSDEL+SDP RLLPVFQAAL + + L+V+C ALKAL SLL  IET A+V  GG
Sbjct:   93 ITVVLVGRIVDVRLETWQNMDPSAKTAVRQGLWHNFTLESDPELVRKLSHAVARASEGWVDLVAASLALLGGTNDEARQVGVFFLLEQMSEYSDELRSDPARLLPVFQAALGEGVPLNVQCAALKALFSLLASIETLASVARGG 236
The following BLAST results are available for this feature:
BLAST of NO17G01990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29045.14.300e-5375.69importin-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01990.1NO17G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01990.1NO17G01990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01990 ID=NO17G01990|Name=NO17G01990|organism=Nannochloropsis oceanica|type=gene|length=435bp
ATGGCCGTGGTCCTGGTCGGACGCATCGTCGACATCCGTCACGAATCCTG
GCAGTCCATGCCGGCCGCCCTCAAGGCCGCCGTCAGGCAAGGCCTCTGGC
ACAACTTCACGCACGAAACCGACCCGGAGCTCGTTCGCAAGCTTTCACAT
GCCGTAGCCCGCGCATCGGAGGGGTGGAAGGATTTGGTCGCGGCATCCAT
TGGTCTGTTGGGGAGCACCAACGACCAGGCCCGGCAAGTGGGAGTATTTT
TCCTCCTGGAGCAGATGTCCGAATACAGCGACGAGCTTAAGAGCGACCCT
GGTCGGCTTCTGCCTGTCTTTCAAGCGGCACTTGTGGATGATATGACCCT
GTCAGTGCGATGCGGGGCGCTCAAGGCATTGTTATCGTTGTTGAATCACA
TAGAGACCAGGGCGGCTGTCATTAATGGGGGGTGA
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protein sequence of NO17G01990.1

>NO17G01990.1-protein ID=NO17G01990.1-protein|Name=NO17G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MAVVLVGRIVDIRHESWQSMPAALKAAVRQGLWHNFTHETDPELVRKLSH
AVARASEGWKDLVAASIGLLGSTNDQARQVGVFFLLEQMSEYSDELKSDP
GRLLPVFQAALVDDMTLSVRCGALKALLSLLNHIETRAAVINGG*
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Synonyms
Publications