NO16G01410, NO16G01410 (gene) Nannochloropsis oceanica

Overview
NameNO16G01410
Unique NameNO16G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1186
Alignment locationchr16:435022..436207 -

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Properties
Property NameValue
DescriptionGlutathione peroxidase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:435022..436207 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004602glutathione peroxidase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
GO:0042221response to chemical
GO:0009987cellular process
GO:0008152metabolic process
GO:0006950response to stress
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR000889Glutathione_peroxidase
Homology
[Close]
BLAST of NO16G01410 vs. NCBI_GenBank
Match: EWM23970.1 (glutathione peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 278.5 bits (711), Expect = 1.900e-71
Identity = 136/198 (68.69%), Postives = 161/198 (81.31%), Query Frame = 0 
Query:   29 LAAAGPRNMALGFFLLASFTSTACAFAAPRTLYDFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTALRAAANKEL 227
            L ++ P  +A     L S  S++ AFA PRTLYDFSLKD TG TQSL+ YKDKPV LIVNVASRCGYTDSNY+QLQ L EKY  DGLQ+ AMP+NEFGGQEPGSDA+I+KFTK+KYAVTFPVFSKL VNG  AS++Y+WLK+ET    + ++ DIRWNFTKFLLVNG+P KRFAH++AP DFE +I+ ALR AA+KEL
Sbjct:    5 LFSSKPTCLAFKVLFLTSLASSS-AFALPRTLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALRDAASKEL 201
[Close]
BLAST of NO16G01410 vs. NCBI_GenBank
Match: ETL89228.1 (hypothetical protein, variant [Phytophthora parasitica] >ETM42508.1 hypothetical protein, variant [Phytophthora parasitica] >ETO71199.1 hypothetical protein, variant [Phytophthora parasitica P1976] >KUF79065.1 Glutathione peroxidase [Phytophthora nicotianae])

HSP 1 Score: 173.3 bits (438), Expect = 8.500e-40
Identity = 82/160 (51.25%), Postives = 112/160 (70.00%), Query Frame = 0 
Query:   62 DFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTALRAA 222
            DF++ D  G   S+  +   PV L+VNVAS CGYTD NY++LQ LYEKY  +G  +   P N+FGGQEPG+  DI+KFTK+KY VTFP+F+K+ VNG +A  ++++LK  TK     TN DI+WNFTKFL+VN  P+KR+    +P + E+DIV AL ++
Sbjct:   27 DFTIPDLNGRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLK--TKLDGFVTN-DIKWNFTKFLIVNHEPFKRYGTTTSPSEIENDIVHALHSS 183
[Close]
BLAST of NO16G01410 vs. NCBI_GenBank
Match: XP_008908581.1 (hypothetical protein PPTG_13883 [Phytophthora parasitica INRA-310] >ETN06079.1 hypothetical protein PPTG_13883 [Phytophthora parasitica INRA-310] >ETP12319.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP40474.1 hypothetical protein F442_12194 [Phytophthora parasitica P10297])

HSP 1 Score: 173.3 bits (438), Expect = 8.500e-40
Identity = 82/160 (51.25%), Postives = 112/160 (70.00%), Query Frame = 0 
Query:   62 DFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTALRAA 222
            DF++ D  G   S+  +   PV L+VNVAS CGYTD NY++LQ LYEKY  +G  +   P N+FGGQEPG+  DI+KFTK+KY VTFP+F+K+ VNG +A  ++++LK  TK     TN DI+WNFTKFL+VN  P+KR+    +P + E+DIV AL ++
Sbjct:   28 DFTIPDLNGRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLK--TKLDGFVTN-DIKWNFTKFLIVNHEPFKRYGTTTSPSEIENDIVHALHSS 184
[Close]
BLAST of NO16G01410 vs. NCBI_GenBank
Match: ETI42605.1 (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 172.6 bits (436), Expect = 1.400e-39
Identity = 79/160 (49.38%), Postives = 109/160 (68.12%), Query Frame = 0 
Query:   62 DFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTALRAA 222
            DF++ D  G   S+  +   PV L+VNVAS CGYTD NY++LQ LYEKY  +G  +   P N+FGGQEPG+  DI+KFTK+KY VTFP+F+K+ VNG +A  ++++LK   K        DI+WNFTKFL+VN  P+KR+    +P + E+DIV AL ++
Sbjct:   27 DFTIPDLNGRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLK---KKLDGFVTNDIKWNFTKFLIVNHEPFKRYGTTTSPSEIENDIVHALHSS 183
[Close]
BLAST of NO16G01410 vs. NCBI_GenBank
Match: ETK82611.1 (hypothetical protein L915_12002 [Phytophthora parasitica] >ETL36001.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 172.6 bits (436), Expect = 1.400e-39
Identity = 79/160 (49.38%), Postives = 109/160 (68.12%), Query Frame = 0 
Query:   62 DFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTALRAA 222
            DF++ D  G   S+  +   PV L+VNVAS CGYTD NY++LQ LYEKY  +G  +   P N+FGGQEPG+  DI+KFTK+KY VTFP+F+K+ VNG +A  ++++LK   K        DI+WNFTKFL+VN  P+KR+    +P + E+DIV AL ++
Sbjct:   28 DFTIPDLNGRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLK---KKLDGFVTNDIKWNFTKFLIVNHEPFKRYGTTTSPSEIENDIVHALHSS 184
[Close]
BLAST of NO16G01410 vs. NCBI_GenBank
Match: POM65621.1 (Glutathione peroxidase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 171.4 bits (433), Expect = 3.200e-39
Identity = 86/188 (45.74%), Postives = 121/188 (64.36%), Query Frame = 0 
Query:   35 RNMALGFFLLASFTSTACAFAAPRTLY-DFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTALRAA 222
            R++ L   L+ +  S   A     T + DFS+ D  G   S+  +   PV L+VNVAS CGYTD NY++LQ LYEKY  +G  + A P N+FGGQEPG+  DI+KFT++KY VTFP+F+K+ VNG +A  ++++LK   K        DI+WNFTKFL+VN  P+KR+    +P + E+DIV AL ++
Sbjct:    4 RSLLLVLTLVMALCSCNAAKGGKVTSFLDFSVPDLRGRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFMVLAFPCNQFGGQEPGTAEDILKFTQEKYHVTFPLFTKVDVNGENAHPLFQFLK---KQLDGFITNDIKWNFTKFLIVNHEPFKRYGTTTSPLEIENDIVQALHSS 188
[Close]
BLAST of NO16G01410 vs. NCBI_GenBank
Match: GAX99139.1 (Hypothetical protein PINS_007003, partial [Pythium insidiosum] >GAX99144.1 Hypothetical protein PINS_007004, partial [Pythium insidiosum])

HSP 1 Score: 169.9 bits (429), Expect = 9.300e-39
Identity = 93/201 (46.27%), Postives = 130/201 (64.68%), Query Frame = 0 
Query:   18 TIQQSTMPTHILAAAGPRNMALGFFLLASFTSTACAFAAPRTLYDFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTAL 219
            +I+Q+TM T    A     +     L A  ++     A P +L+ F++KDA+G   S+A+++     LIVNVAS CGYTD NYK+LQ LY KY   GL+I A P N+FG QEP S+ +I++F +D+Y V+FPV +K+ VNG DA  ++ +L  +TK P   TN  I+WNFTKFL+V+G+P KR+A   +P   ESDIV AL
Sbjct:    1 SIKQATMATMARVA-----IVCALSLCAILSAMGNDTAEP-SLWSFTMKDASGKDVSMASFQSSKAILIVNVASACGYTDQNYKELQVLYNKYHTKGLEIIAFPCNQFGHQEPNSEPEILRFVRDQYHVSFPVMAKVDVNGDDALPLFTYL--QTKLPGFVTN-SIKWNFTKFLVVDGVPTKRYATTTSPFALESDIVAAL 192
[Close]
BLAST of NO16G01410 vs. NCBI_GenBank
Match: XP_024585464.1 (RxLR-like protein [Plasmopara halstedii] >CEG49095.1 RxLR-like protein [Plasmopara halstedii])

HSP 1 Score: 167.9 bits (424), Expect = 3.600e-38
Identity = 78/158 (49.37%), Postives = 107/158 (67.72%), Query Frame = 0 
Query:   62 DFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTALR 220
            DFS+ +  G   S+  +   PV L+VNVAS+CGYTD NY++LQ LYEKY  +G  +   P N+FGGQEPG+  DI+KFT++KY VTFP+FSK+ VNG +A  ++ +LK   K        DI+WNFTKFL+VN  P+ R+    +P + ESDI+ AL+
Sbjct:   28 DFSVPNLQGHEVSMREFHAFPVILVVNVASQCGYTDKNYRELQELYEKYHDEGFMVLGFPCNQFGGQEPGTADDILKFTQEKYHVTFPLFSKVDVNGENAHPLFTYLK---KQLDGYITNDIKWNFTKFLIVNHEPFMRYGTSTSPLEIESDIIQALQ 182
[Close]
BLAST of NO16G01410 vs. NCBI_GenBank
Match: CCA24234.1 (glutathione peroxidase putative [Albugo laibachii Nc14])

HSP 1 Score: 166.0 bits (419), Expect = 1.300e-37
Identity = 81/169 (47.93%), Postives = 105/169 (62.13%), Query Frame = 0 
Query:   54 FAAPRTLYDFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTALRAAA 223
            +A  ++ YDF +KD  G    L  Y+  PV L+VNVAS CGY D NYK+LQTLY KYQ  GL I A P N+F  QE  S+ +I+ F + +Y VTFP+F K+ VNG +A   +++L   TK        DI+WNFTKFL+V G+P KR+     P D +SDI  AL  AA
Sbjct:   15 YAESQSAYDFHVKDIKGEPVHLLTYRKSPVWLVVNVASACGYADQNYKELQTLYTKYQDQGLVILAFPCNQFNSQESKSNEEILSFVQKRYGVTFPLFEKILVNGPNADPFFKFL---TKKQSGFITDDIKWNFTKFLIVQGVPVKRYGTSTRPLDIDSDIQEALANAA 180
[Close]
BLAST of NO16G01410 vs. NCBI_GenBank
Match: OQR92622.1 (glutathione peroxidase [Achlya hypogyna])

HSP 1 Score: 164.5 bits (415), Expect = 3.900e-37
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 0 
Query:   49 STACAFAAPRTLYDFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNYKQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPVFSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKRFAHDKAPKDFESDIVTALRAAANKEL 227
            S   A  +  + +DF +K       SL+ Y      L+VNVAS CG+TDSNY++LQ+LY KY   GL+I   P N+FG QEPGS ADI+ +T+  Y VTFP+F K+ VNG +A+ ++++L   T+        DI+WNFTKFL+ +G PY R+A   +P + ES IV  L   +++EL
Sbjct:   10 SMVTAVVSSTSFFDFVVKGEDNVDVSLSTYAHNKAILVVNVASACGFTDSNYRELQSLYTKYHDQGLEILGFPCNQFGAQEPGSYADIVAYTQRNYDVTFPIFQKVDVNGDNAAPVFKYL---TEALTGSFTNDIKWNFTKFLIAHGRPYARYATTTSPSELESTIVRILTTNSHEEL 184
The following BLAST results are available for this feature:
BLAST of NO16G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23970.11.900e-7168.69glutathione peroxidase [Nannochloropsis gaditana][more]
ETL89228.18.500e-4051.25hypothetical protein, variant [Phytophthora parasi... [more]
XP_008908581.18.500e-4051.25hypothetical protein PPTG_13883 [Phytophthora para... [more]
ETI42605.11.400e-3949.38hypothetical protein, variant [Phytophthora parasi... [more]
ETK82611.11.400e-3949.38hypothetical protein L915_12002 [Phytophthora para... [more]
POM65621.13.200e-3945.74Glutathione peroxidase [Phytophthora palmivora var... [more]
GAX99139.19.300e-3946.27Hypothetical protein PINS_007003, partial [Pythium... [more]
XP_024585464.13.600e-3849.37RxLR-like protein [Plasmopara halstedii] >CEG49095... [more]
CCA24234.11.300e-3747.93glutathione peroxidase putative [Albugo laibachii ... [more]
OQR92622.13.900e-3743.82glutathione peroxidase [Achlya hypogyna][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003130NSK003130Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01410.1NO16G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593505gene_6023Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g13gene6485Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01410.1NO16G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01410 ID=NO16G01410|Name=NO16G01410|organism=Nannochloropsis oceanica|type=gene|length=1186bp
GAATTGTTTCGCCAAAAAAAACACGGAGCAAGTTTGTTTGCATGTCCATC
TCGTGCGTCATTACACACCACCTACGTATACAGCTCGCTACAACCATCCA
ACAAAGCACTATGCCGACTCACATCCTCGCTGCTGCCGGGCCCCGCAACA
TGGCCTTGGGATTCTTCCTTCTGGCCTCGTTCACTTCGACGGCCTGTGCG
TTCGCCGCTCCTCGTACTCTCTACGATTTTTCGCTCAAGGATGCCACGGG
CACGACGCAGAGCCTCGCCGCCTACAAAGACAAGCCTGTCACGCTGATgt
aagtctcaagtcgctggtcgggcccttgggtttggtattggaaggtgcca
cttgtcaccttcacacccgcgtctctccctttctctttcatccgaaaaaa
cttcagCGTGAACGTGGCATCTCGTTGCGGATATACCGACAGTAATTACA
AGCAGCTCCAAACTCTTTATGAAAAGTACCAGAAGGATGGCTTGCAGATC
TTTGCCATGCCCACCAACGAATTTGGAGGACAGGAGCCGGGCTCTGATGC
TGACATCATCAAGTTCACAAAGGACAAATACGCCGTTACGTTTCCCGTGT
TTAGCAAGCTCAAGGTGAATGGTGGTGATGCTTCAGAGATCTACCGCTGG
CTTAAGTCTGAAACGAAGGACCCGCCTGCTGAAACCAATAAAGATATCCG
GTGGAATTTTACCAAGgttcgtttattgcaccacttttgttgtgcctgcg
tctgagtcagttttttagcttggtaattacgcgacgccatccctttcctg
agaataagctgtggtctagagtcaatgtgatggatatctggtttttgtcc
tttccaaggttaaaccccatggtagaaaaatgctgattggagcactttca
cgtaccttctcacactcacatgacagTTTTTGCTCGTTAACGGCATGCCC
TACAAGCGTTTTGCCCACGATAAGGCCCCGAAGGATTTTGAATCTGACAT
CGTAACCGCTTTGCGCGCAGCTGCGAATAAGGAGCTATAAGAGAGCATTA
GTACGTGAGAGAACGGAGAGGTGTAGACCTCTAGTGGCGCGCAGGAAGCG
AGACCGAGTGACTGAAAGTCTCTCTCCTCGATGGCGGTGGAAAAAGAAAC
AGACGTGACATGATTGAAAGCAACTTAGTCAACAGT
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protein sequence of NO16G01410.1

>NO16G01410.1-protein ID=NO16G01410.1-protein|Name=NO16G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MSISCVITHHLRIQLATTIQQSTMPTHILAAAGPRNMALGFFLLASFTST
ACAFAAPRTLYDFSLKDATGTTQSLAAYKDKPVTLIVNVASRCGYTDSNY
KQLQTLYEKYQKDGLQIFAMPTNEFGGQEPGSDADIIKFTKDKYAVTFPV
FSKLKVNGGDASEIYRWLKSETKDPPAETNKDIRWNFTKFLLVNGMPYKR
FAHDKAPKDFESDIVTALRAAANKEL*
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Synonyms
Publications