NO16G01210, NO16G01210 (gene) Nannochloropsis oceanica

Overview
NameNO16G01210
Unique NameNO16G01210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1008
Alignment locationchr16:375750..376757 +

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Properties
Property NameValue
DescriptionRieske (2fe-2s) region protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:375750..376757 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036922Rieske_2Fe-2S_sf
IPR017941Rieske_2Fe-2S
Homology
BLAST of NO16G01210 vs. NCBI_GenBank
Match: EWM24009.1 (rieske (2fe-2s) region protein [Nannochloropsis gaditana])

HSP 1 Score: 377.1 bits (967), Expect = 3.300e-101
Identity = 181/196 (92.35%), Postives = 189/196 (96.43%), Query Frame = 0
Query:    1 MKVAAVLLALCATTQAFVPQFARPSPRAGPLAAGPQASDGSIRVKSVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTPLDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY 197
            MKVAA+LLALCATTQAFVP  A+P+PRA P+AAG Q  DGSIRVK VKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVAN+CPHLGTPLDQGSLGDGTIVCPLHKSAFSLE+GELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEAL+N+NLKADFESKYWAGLLDAQGKATGDYY
Sbjct:    1 MKVAAILLALCATTQAFVPFAAKPAPRAAPVAAGKQNPDGSIRVKGVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGDGTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196          
BLAST of NO16G01210 vs. NCBI_GenBank
Match: CBN77428.1 (ferredoxin component [Ectocarpus siliculosus])

HSP 1 Score: 236.5 bits (602), Expect = 7.100e-59
Identity = 117/199 (58.79%), Postives = 146/199 (73.37%), Query Frame = 0
Query:    1 MKVAAVL--LALCATTQAFVPQFARPSPRAGPLAAGPQASDGSIRVKSVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTPLDQGSL-GDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY 197
            MKV+ V+  +A      AFV   A  + R G +  G   S  ++ VK    K+EWVP+LK +DIAPG+++ V   G +LL+ AD  GS+Y  AN+CPHLGTPLDQGS+   G +VCPLHKSAFSLE G+LVGDWCPFPPVLGPLVLG+L+P +DLAVF VR+ G +I+ L+N NLK +FESKYW GLLDAQGKA+GDYY
Sbjct:    1 MKVSGVVCFMAAAGAANAFV---APSATRLGAVTRG--ESSLNMAVKKPAKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 194          
BLAST of NO16G01210 vs. NCBI_GenBank
Match: CEM05161.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 216.5 bits (550), Expect = 7.600e-53
Identity = 95/145 (65.52%), Postives = 117/145 (80.69%), Query Frame = 0
Query:   52 EWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTPLDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY 197
            EW  +L   +IA GD++PV+  GL LLLVAD DGS+YCVANVCPH+GTPL+QG + DG +VCPLH++AFSLESGE+VGDWCPFPP++GPL  GKL+PP++LA F VR RG  IE L++ + KA+FE  YW GLLDAQGKA G YY
Sbjct:   79 EWKAVLNDDEIAAGDLVPVQVNGLNLLLVADADGSIYCVANVCPHIGTPLEQGEVKDGKVVCPLHRTAFSLESGEVVGDWCPFPPLVGPLT-GKLRPPQNLATFPVRQRGRTIEVLVDSSAKANFEKNYWKGLLDAQGKADGSYY 222          
BLAST of NO16G01210 vs. NCBI_GenBank
Match: CEM00673.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 214.2 bits (544), Expect = 3.800e-52
Identity = 97/172 (56.40%), Postives = 123/172 (71.51%), Query Frame = 0
Query:   25 SPRAGPLAAGPQASDGSIRVKSVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTPLDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY 197
            SP        P+ S  ++         EW  +L   +IA GD++PV+  GL LLLVAD DGS+YCVANVCPH+GTPL+QG + DG ++CPLH++AFSLE GE+VG+WCPFPP++GPL  GKL+PP++LA F VR RG  IE L++ N KA+FE  YW GLLDAQGKA G YY
Sbjct:   52 SPSLYQARHAPRTSLQAVFGGKTTTAQEWKAVLNDDEIAAGDLVPVQVNGLNLLLVADTDGSIYCVANVCPHIGTPLEQGEVKDGKVICPLHRTAFSLEKGEVVGEWCPFPPLVGPLT-GKLRPPQNLATFPVRQRGRTIEVLVDSNTKANFEKNYWKGLLDAQGKADGSYY 222          
BLAST of NO16G01210 vs. NCBI_GenBank
Match: XP_005711696.1 (Ferredoxin component [Chondrus crispus] >CDF41402.1 Ferredoxin component [Chondrus crispus])

HSP 1 Score: 196.8 bits (499), Expect = 6.200e-47
Identity = 86/154 (55.84%), Postives = 112/154 (72.73%), Query Frame = 0
Query:   43 RVKSVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTPLDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY 197
            R   V  +D WVPLL  ++I+PG++  V + G Q+L+  DYDG VY  AN+CPHLGTPL  GS+GDG + C  HKS++ L +GEL GDWCPFPP++GP VLGKLQ PR L ++ VR     IEALL+++ KAD+E +YW G+LDA GKATG Y+
Sbjct:   35 RSSLVMKQDAWVPLLDTSEISPGELKGVVTAGQQILVSCDYDGQVYASANICPHLGTPLTDGSVGDGVLTCTQHKSSWDLSTGELAGDWCPFPPLIGP-VLGKLQGPRPLTIYPVRENAGRIEALLDVDAKADYEKEYWQGILDATGKATGAYH 187          
BLAST of NO16G01210 vs. NCBI_GenBank
Match: OSX77273.1 (hypothetical protein BU14_0153s0016 [Porphyra umbilicalis])

HSP 1 Score: 196.8 bits (499), Expect = 6.200e-47
Identity = 95/183 (51.91%), Postives = 119/183 (65.03%), Query Frame = 0
Query:   14 TQAFVPQFARPSPRAGPLAAGPQASDGSIRVKSVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTPLDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY 197
            + AF    A P+ +A  L+  P   +           D WV LL  +DI PG++ PV + G  +LL  DYDG VY  +N+CPHLGTPL  G +GDG + C  HKS++ L++GEL G WCPFPPVLGPL LGKLQPP +LAVF VR     IEALL+++    FES YW GLLD++GKATGDYY
Sbjct:   27 SSAFGSAVAAPASQAARLSHAPMRME----------TDAWVQLLPTSDIEPGELKPVYTTGQNILLSCDYDGQVYASSNICPHLGTPLTDGEVGDGVLTCAQHKSSWDLKTGELSGTWCPFPPVLGPL-LGKLQPPSNLAVFPVRENSGYIEALLDVDAAKAFESNYWFGLLDSKGKATGDYY 198          
BLAST of NO16G01210 vs. NCBI_GenBank
Match: OSX77277.1 (hypothetical protein BU14_0153s0020 [Porphyra umbilicalis])

HSP 1 Score: 196.8 bits (499), Expect = 6.200e-47
Identity = 95/183 (51.91%), Postives = 119/183 (65.03%), Query Frame = 0
Query:   14 TQAFVPQFARPSPRAGPLAAGPQASDGSIRVKSVKAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTPLDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY 197
            + AF    A P+ +A  L+  P   +           D WV LL  +DI PG++ PV + G  +LL  DYDG VY  +N+CPHLGTPL  G +GDG + C  HKS++ L++GEL G WCPFPPVLGPL LGKLQPP +LAVF VR     IEALL+++    FES YW GLLD++GKATGDYY
Sbjct:   27 SSAFGSAVAAPASQAARLSHAPMRME----------TDAWVQLLPTSDIEPGELKPVYTTGQNILLSCDYDGQVYASSNICPHLGTPLTDGEVGDGVLTCAQHKSSWDLKTGELSGTWCPFPPVLGPL-LGKLQPPSNLAVFPVRENSGYIEALLDVDAAKAFESNYWFGLLDSKGKATGDYY 198          
BLAST of NO16G01210 vs. NCBI_GenBank
Match: XP_005703205.1 (ferredoxin component (biphenyl dioxygenase, Rieske iron-sulfur component related protein) [Galdieria sulphuraria] >EME26685.1 ferredoxin component (biphenyl dioxygenase, Rieske iron-sulfur component related protein) [Galdieria sulphuraria])

HSP 1 Score: 195.3 bits (495), Expect = 1.800e-46
Identity = 87/152 (57.24%), Postives = 111/152 (73.03%), Query Frame = 0
Query:   46 SVKAKDE-WVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTPLDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY 197
            S+  K E WV L+K  +I PGD+ P    G  LL+V DYDG VYC ANVCPHLGTPLDQG +G GT++C  H++++ L  G+L G WCP+PP+LGPL LGKL+ P+DL+VF VR     IEAL++++   +FES YW G+LDAQGKATG YY
Sbjct:   59 SISMKTEAWVKLVKTEEIKPGDLKPFFVAGQSLLVVCDYDGQVYCTANVCPHLGTPLDQGLIGSGTLICAQHRTSWRLSDGKLAGKWCPYPPILGPL-LGKLKVPQDLSVFPVREMNGFIEALIDLDAAKEFESNYWRGILDAQGKATGGYY 209          
BLAST of NO16G01210 vs. NCBI_GenBank
Match: OSX76651.1 (hypothetical protein BU14_0183s0042 [Porphyra umbilicalis])

HSP 1 Score: 194.1 bits (492), Expect = 4.000e-46
Identity = 96/182 (52.75%), Postives = 121/182 (66.48%), Query Frame = 0
Query:   23 RPSPR-------AGPLAAGPQASDGSIRVKSVKAK-DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTPLDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY 197
            RPSP        AG   A P A+    R   +  K D WVPL++   + PG++  V + G  +L+  D DG VY  +N+CPHLGTPL  GS+GDG + C  HKS++ L++GEL G+WCPFPPVLGPL LGKLQ P  LAVF VR +   IEALL+++  A+FES YW GLLDAQGKA+GDYY
Sbjct:   17 RPSPAICSRRVFAGTAVASPSAA----RAAPLTMKTDVWVPLVETAALEPGELKAVYTTGQSILVTCDIDGQVYASSNICPHLGTPLTDGSVGDGVLTCAQHKSSWDLKTGELAGEWCPFPPVLGPL-LGKLQAPSTLAVFPVREKSGTIEALLDMDAVAEFESDYWKGLLDAQGKASGDYY 193          
BLAST of NO16G01210 vs. NCBI_GenBank
Match: CEM20302.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 181.8 bits (460), Expect = 2.100e-42
Identity = 91/203 (44.83%), Postives = 128/203 (63.05%), Query Frame = 0
Query:    8 LALCATTQAFVPQFARPSPRAGPLAAGP--------QASDGSIRVKSV-----KAKDEWVPLLKATDIAPGDIIPVESKGLQLLLVAD-YDGSVYCVANVCPHLGTPLDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY 197
            + L   + A V  F  PSPR+               ++SD   R+ ++       K EW  +L+  +IAPGD++P+E  GL+LLLVA+  DG++YCV N  P LGTPL++G + DG ++CP +++AF L +GE+VG+WCPFPPV+G  + GKL P R L  F VR +G  I+  +++  KA+FE KYW GLLDAQGKA G YY
Sbjct:   34 IVLTVLSAAVVTGFVIPSPRSPSSGDASNLYTKRRRRSSDRLSRMDAIVGAQPAVKQEWKSVLEVDEIAPGDLMPIEVNGLKLLLVAEAKDGTIYCVGNASPPLGTPLEEGEVKDGKVICPNYRTAFDLSTGEVVGEWCPFPPVIG-FLTGKLSPQRPLNTFPVRQQGKMIQVQVDVMAKANFERKYWKGLLDAQGKADGGYY 235          
The following BLAST results are available for this feature:
BLAST of NO16G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24009.13.300e-10192.35rieske (2fe-2s) region protein [Nannochloropsis ga... [more]
CBN77428.17.100e-5958.79ferredoxin component [Ectocarpus siliculosus][more]
CEM05161.17.600e-5365.52unnamed protein product [Vitrella brassicaformis C... [more]
CEM00673.13.800e-5256.40unnamed protein product [Vitrella brassicaformis C... [more]
XP_005711696.16.200e-4755.84Ferredoxin component [Chondrus crispus] >CDF41402.... [more]
OSX77273.16.200e-4751.91hypothetical protein BU14_0153s0016 [Porphyra umbi... [more]
OSX77277.16.200e-4751.91hypothetical protein BU14_0153s0020 [Porphyra umbi... [more]
XP_005703205.11.800e-4657.24ferredoxin component (biphenyl dioxygenase, Rieske... [more]
OSX76651.14.000e-4652.75hypothetical protein BU14_0183s0042 [Porphyra umbi... [more]
CEM20302.12.100e-4244.83unnamed protein product [Vitrella brassicaformis C... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003108NSK003108Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01210.1NO16G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593445gene_6003Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g37gene6464Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01210.1NO16G01210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01210 ID=NO16G01210|Name=NO16G01210|organism=Nannochloropsis oceanica|type=gene|length=1008bp
ATGAAGGTCGCCGCCGTCCTCCTTGCTCTCTGCGCCACAACCCAGGCTTT
CGgtaagtctgagttggtatgaggaagggcagggggaggaacgggaatga
gaatactcttagtagcagctcattttaccttagagttggctatgttatgt
ggggggttgtttttgcgttgggtagggcgtccttttcggtattcaagggt
gatgtggatgggaagggggggagccacacaatgagccagtcaaagcatcc
gcatgtgtcggatggtagggaaattgtgtggatgtattttgtatacacgc
ccattttgggcggagatagatgcccgggtggatggggagacggaccttgg
aatgcgaggaacttggatggcgaggatcagggcaatcataccattttgca
ctgtatgccgcattcgatctggagaaaactgacccgccctcatcaacccc
accccaaccccaaaaacagTGCCTCAGTTCGCCCGGCCCTCCCCTCGGGC
AGGCCCCTTGGCCGCCGGTCCCCAGGCCTCGGACGGCTCCATCCGTGTCA
AGAGTGTGAAGGCCAAGGACGAATGGGTGCCCCTCCTGAAGGCCACCGAC
ATTGCCCCCGGTGACATCATCCCCGTCGAGTCCAAGGGCCTCCAGCTCCT
CCTTGTGGCCGACTACGACGGCTCTGTCTACTGCGTTGCCAATGTCTGCC
CCCACCTCGGCACGCCCCTCGACCAGGGCTCCCTGGGCGATGGCACCATC
GTCTGCCCCCTCCACAAGTCCGCTTTCAGCCTCGAGTCCGGTGAACTCGT
CGGAGACTGGTGCCCTTTCCCCCCCGTCCTTGGCCCCCTTGTCCTCGGCA
AGCTCCAGCCCCCCCGCGACTTGGCTGTGTTCCAGGTCCGTTCCCGTGGC
TCGGACATTGAGGCATTGCTCAACATTAATCTGAAGGCCGATTTCGAGAG
CAAGTACTGGGCGGGTCTCCTTGACGCGCAGGGCAAGGCCACCGGTGACT
ACTATTAG
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protein sequence of NO16G01210.1

>NO16G01210.1-protein ID=NO16G01210.1-protein|Name=NO16G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MKVAAVLLALCATTQAFVPQFARPSPRAGPLAAGPQASDGSIRVKSVKAK
DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTP
LDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPR
DLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY*
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Synonyms
Publications