NO14G01660, NO14G01660 (gene) Nannochloropsis oceanica

Overview
NameNO14G01660
Unique NameNO14G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length861
Alignment locationchr14:516098..516958 -

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Properties
Property NameValue
DescriptionRing finger protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:516098..516958 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
BLAST of NO14G01660 vs. NCBI_GenBank
Match: EWM24656.1 (ring finger protein [Nannochloropsis gaditana])

HSP 1 Score: 290.8 bits (743), Expect = 4.600e-75
Identity = 159/233 (68.24%), Postives = 169/233 (72.53%), Query Frame = 0
Query:   57 TPTQ-HSASPQASGGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCLYRWLNTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQEATDVPGRPTAQ----RPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGXGMVSFSAGFGFFPSLFGLQFQTFVPSSSSSXXXXXXXXXXXXXXXXXXXXXXXTADEAQQAFLSKLLLMLGIFTLGVLV 285
            TPT  H     +S  DSRFDCNVCLSEV DPVVTLCGHLYCW CLYRWL+TNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTR  RGG    +EATDVPGRP AQ    RP+A +FIGG  AF+GG+PFN+FG  +HYTGG  G  G       VSFSAG GFFPSLFGLQFQTF PSSSSS                       TADEAQQAFLSKLLL LGIFTLGVL+
Sbjct:   83 TPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTR--RGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSS-------VAATQGVGFNGSGNGSTADEAQQAFLSKLLLTLGIFTLGVLI 306          
BLAST of NO14G01660 vs. NCBI_GenBank
Match: CBJ31812.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 160.6 bits (405), Expect = 7.200e-36
Identity = 89/156 (57.05%), Postives = 99/156 (63.46%), Query Frame = 0
Query:   71 DSRFDCNVCLSEVEDPVVTLCGHLYCWSCLYRWLNTNHT-CPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQEATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGXGMVSFSAGFGFFPSLFGLQF 226
            DS F+CN+CL  V +PVVT CGHL+CW CLYRWLNTN T CPVCKAGVT  NVIPLYGRG+E VDPRTK     G          VP RP A+RPQA+  +    AF GG  F+  G       G  G+G  A   G V F AG GFFPSLFGLQF
Sbjct:   12 DSYFECNICLDGVREPVVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTASNVIPLYGRGAESVDPRTKPTERDG----------VPSRPEAERPQAAR-LRHANAFTGG--FDVGGGXXAGPTGEDGVGNGAVAGGHVHFQAGLGFFPSLFGLQF 154          
BLAST of NO14G01660 vs. NCBI_GenBank
Match: GAQ93251.1 (E3 ubiquitin-protein ligase RNF5 [Klebsormidium nitens])

HSP 1 Score: 145.6 bits (366), Expect = 2.400e-31
Identity = 93/230 (40.43%), Postives = 119/230 (51.74%), Query Frame = 0
Query:   59 TQHSASPQASGGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCLYRWLNTN---HTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQEATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGXGMVSFSAGFGFFPSLFGLQFQTFVPSSSSSXXXXXXXXXXXXXXXXXXXXXXXTADEAQQAFLSKLLLMLGIFTLGVLVF 286
            ++ +AS    GG   F+CN+CL   +DPVVTLCGHL+CW CLYRWL  +     CPVCKAGV+++NVIPLYGRG+   DPRTK               ++P RP  QRP++          MG  PF             G M G +A  G  + SAGFG FPSL GLQ+Q +    +                         T ++ QQAFLS+LL+MLG F L  L+F
Sbjct:   56 SERTASANGEGGS--FECNICLELAQDPVVTLCGHLFCWPCLYRWLRLHSQCKECPVCKAGVSEKNVIPLYGRGTSGEDPRTKP----------VSGPEIPRRPAGQRPESQ-----RAPQMG--PF-------------GFMAGPSAQFGNFTLSAGFGLFPSLLGLQWQAY----TGDPMPAGFAAPDDGTGVAPVPRAALTPEQQQQAFLSRLLVMLGSFVLLCLLF 249          
BLAST of NO14G01660 vs. NCBI_GenBank
Match: OAE33371.1 (hypothetical protein AXG93_3296s1100 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 139.4 bits (350), Expect = 1.700e-29
Identity = 91/234 (38.89%), Postives = 119/234 (50.85%), Query Frame = 0
Query:   60 QHSASPQASGG--DSRFDCNVCLSEVEDPVVTLCGHLYCWSCLYRWLNTN---HTCPVCKAGVTKENVIPLYGRGS-EQVDPRTKTRRARGGVGTGQEATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGXGMVSFSAGFGFFPSLFGLQFQTFVPSS--SSSXXXXXXXXXXXXXXXXXXXXXXXTADEAQQAFLSKLLLMLGIFTLGVLVF 286
            + S +PQ++ G     FDCN+CL   +DPVVTLCGHL+CW CLYRWL  +     CPVCKA V +E VIPLYGRG    VDPRTK               ++P RP  QRP  +       A       + F    ++  GPG  G ++A  G ++ SAGFG FPSLFGLQ   F  ++    +                         D+ Q+A LS+LLL+LG F +  +VF
Sbjct:   20 EDSQAPQSTAGADGGSFDCNICLELAQDPVVTLCGHLFCWPCLYRWLQIHSICQECPVCKASVEEEKVIPLYGRGKVGSVDPRTK----------AVPGLNIPHRPAGQRPDTARH-----ADQHSYQHHGF----NFMPGPG--GPASARFGNITLSAGFGLFPSLFGLQLHGFPETAGLGGTSGLHFGPSGPGSQSSHIHASPPIVPDQQQEALLSRLLLLLGCFVIFYVVF 232          
BLAST of NO14G01660 vs. NCBI_GenBank
Match: PTQ36552.1 (hypothetical protein MARPO_0063s0084 [Marchantia polymorpha])

HSP 1 Score: 137.5 bits (345), Expect = 6.500e-29
Identity = 90/233 (38.63%), Postives = 118/233 (50.64%), Query Frame = 0
Query:   60 QHSASPQASGG--DSRFDCNVCLSEVEDPVVTLCGHLYCWSCLYRWLNTN---HTCPVCKAGVTKENVIPLYGRGS-EQVDPRTKTRRARGGVGTGQEATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGXGMVSFSAGFGFFPSLFGLQFQTFVPSS--SSSXXXXXXXXXXXXXXXXXXXXXXXTADEAQQAFLSKLLLMLGIFTLGVLV 285
            + S +PQ++ G     FDCN+CL   +DPVVTLCGHL+CW CLYRWL  +     CPVCKA V +E VIPLYGRG    VDPRTK               ++P RP  QRP  +       A       + F    ++  GPG  G ++A  G ++ SAGFG FPSLFGLQ   F  ++    +                         D+ Q+A LS+LLL+LG F +  L+
Sbjct:   20 EDSQAPQSTAGADGGSFDCNICLELAQDPVVTLCGHLFCWPCLYRWLQIHSICQECPVCKASVEEEKVIPLYGRGKVGSVDPRTK----------AVPGLNIPHRPAGQRPDTARH-----ADQHSYQHHGF----NFMPGPG--GPASARFGNITLSAGFGLFPSLFGLQLHGFPETAGLGGTSGLHFGPSGPGSQSSHIHASPPIVPDQQQEALLSRLLLLLGCFVIVCLL 231          
BLAST of NO14G01660 vs. NCBI_GenBank
Match: OQR94505.1 (ring finger protein 5 [Achlya hypogyna])

HSP 1 Score: 135.6 bits (340), Expect = 2.500e-28
Identity = 89/222 (40.09%), Postives = 112/222 (50.45%), Query Frame = 0
Query:   69 GGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCLYRWLNTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQEATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGXGMVSFSAGFGFFPSLFGLQFQTFVPSSSSSXXXXXXXXXXXXXXXXXXXXXXXTADEAQQ----AFLSKLLLMLG-IFTLGVLVF 286
            G  S FDCN+C+  V++PVVTLCGHLYCW CL++W+  ++ CPVCKAGVT ENVIP+YGRG+  VDPRT     +G  G       +P RP  QRP+ S            L            G PG            +FS   GFFPSLFGLQFQ+   +   +                       TA E QQ    AFLSK+LL +G    LG+++F
Sbjct:    3 GAASDFDCNICIDRVKEPVVTLCGHLYCWPCLFQWIANHNDCPVCKAGVTSENVIPVYGRGANSVDPRT----VKGTDG-------IPNRPRGQRPEPS------------LRRRHVQEPEALVGPPG---------QEAAFSPLIGFFPSLFGLQFQSAATAGMPT---------------GNLQASPLTAAELQQQVQFAFLSKMLLFVGTAVMLGLILF 177          
BLAST of NO14G01660 vs. NCBI_GenBank
Match: XP_008612458.1 (hypothetical protein SDRG_08354 [Saprolegnia diclina VS20] >EQC34146.1 hypothetical protein SDRG_08354 [Saprolegnia diclina VS20])

HSP 1 Score: 135.2 bits (339), Expect = 3.200e-28
Identity = 82/213 (38.50%), Postives = 106/213 (49.77%), Query Frame = 0
Query:   74 FDCNVCLSEVEDPVVTLCGHLYCWSCLYRWLNTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQEATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGXGMVSFSAGFGFFPSLFGLQFQTFVPSSSSSXXXXXXXXXXXXXXXXXXXXXXXTADEAQQAFLSKLLLMLG-IFTLGVLVF 286
            FDCN+CL  V++PVVTLCGHLYCW CL++W+  ++ CPVCKAGVTKENVIP+YGRG+  +DPRT              A D+P RP  QRP         P+      F       H                  +FS   GFFPSLFGLQFQ+   ++  +                          + Q AFLSK+LL +G    LG+++F
Sbjct:    8 FDCNICLDRVKEPVVTLCGHLYCWPCLFQWIANHNECPVCKAGVTKENVIPVYGRGANTIDPRTV-----------DGADDIPNRPRGQRP--------APSLRRRFMFQPDPLPPH--------------AQEAAFSPLIGFFPSLFGLQFQSAATATMPN-------------THTGPLTPAELQQQVQFAFLSKMLLFVGSAVMLGLILF 174          
BLAST of NO14G01660 vs. NCBI_GenBank
Match: ABK21979.1 (unknown [Picea sitchensis] >ABR17325.1 unknown [Picea sitchensis])

HSP 1 Score: 134.8 bits (338), Expect = 4.200e-28
Identity = 88/224 (39.29%), Postives = 116/224 (51.79%), Query Frame = 0
Query:   68 SGGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCLYRWL---NTNHTCPVCKAGVTKENVIPLYGRGSEQV-DPRTKTRRARGGVGTGQEATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGXGMVSFSAGFGFFPSLFGLQFQTFVP--SSSSSXXXXXXXXXXXXXXXXXXXXXXXTADEAQQAFLSKLLLMLGIFTLGVLVF 286
            SG    F+CN+CL   +DP+VTLCGHL+CW CLY+WL   + +  CPVCKA V ++ ++PLYGRG     DPR+K   A  G+       ++P RP  +RP+ +   G  P      PF   G      GGP  MG  AA  G  +FSAGFG FPSLFG Q   F       ++                       T ++ QQA LSK LL++GIF +  L+F
Sbjct:   36 SGDAGSFECNICLELAQDPIVTLCGHLFCWPCLYKWLHGHSKSQECPVCKALVEEDKIVPLYGRGKVGAPDPRSK---AIPGI-------NIPHRPAGRRPETAPSPG--PNLFQQQPFGFMG------GGPAPMG--AARFGNFTFSAGFGLFPSLFGFQMHGFPDGVGYGAAPGYNYGFSNPFQGGHPHTFHQPMTREQEQQAMLSKYLLIIGIFVVVCLIF 239          
BLAST of NO14G01660 vs. NCBI_GenBank
Match: XP_009821658.1 (hypothetical protein H257_00605 [Aphanomyces astaci] >ETV89258.1 hypothetical protein H257_00605 [Aphanomyces astaci])

HSP 1 Score: 134.8 bits (338), Expect = 4.200e-28
Identity = 92/231 (39.83%), Postives = 110/231 (47.62%), Query Frame = 0
Query:   59 TQHSASP---QASGGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCLYRWLNTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQEATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGXGMVSFSAGFGFFPSLFGLQFQTFVPSSSSSXXXXXXXXXXXXXXXXXXXXXXXTADEAQQAFLSKLLLMLG-IFTLGVLVF 286
            T  S SP   +A  G   FDCN+CL  V++PVVTLCGHLYCW CLYRW+ +N  CPVCKAGVT++NVIP+YGRGS  VDPR ++     G         VP RP  QRP+        P    G     F      T               V FS   GFFPSLFGLQFQ    S  +                             Q  FLS+ LL+LG +  L ++VF
Sbjct:    5 TVSSESPPPREAPDGSHAFDCNICLDHVKEPVVTLCGHLYCWPCLYRWICSNSQCPVCKAGVTQDNVIPVYGRGSNSVDPRKQSVPLDVG---------VPDRPRGQRPE--------PVQRRG----RFAPEQDSTQD-------------VGFSPMIGFFPSLFGLQFQHATHSPVAD---------------TGPVSEAEAQQRVQHVFLSRFLLLLGTLVMLSLIVF 186          
BLAST of NO14G01660 vs. NCBI_GenBank
Match: XP_024367794.1 (E3 ubiquitin-protein ligase RNF185-like [Physcomitrella patens] >PNR26510.1 hypothetical protein PHYPA_031085 [Physcomitrella patens])

HSP 1 Score: 131.0 bits (328), Expect = 6.100e-27
Identity = 87/224 (38.84%), Postives = 110/224 (49.11%), Query Frame = 0
Query:   62 SASPQASGGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCLYRWLNTN---HTCPVCKAGVTKENVIPLYGRGSEQ-VDPRTKTRRARGGVGTGQEATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGXGMVSFSAGFGFFPSLFGLQFQTFVPSSS-SSXXXXXXXXXXXXXXXXXXXXXXXTADEAQQAFLSKLLLMLGIFTL 281
            SA+  +  G S FDCN+CL   +DPVVTLCGHL+CW CLYRWL  +     CPVCK  V ++ VIPLYGRG    VDPRTK               ++P RP  QRP+ +          G   FN       +  GP G   +A   G ++ SAGFG FPSLFG Q   F  +S                             D+ Q+A LS+LLL+LG+F +
Sbjct:   56 SAAGSSDQGGS-FDCNICLELAQDPVVTLCGHLFCWPCLYRWLQMHSICQECPVCKGSVEEDKVIPLYGRGKVNCVDPRTK----------AVPGLNIPHRPVGQRPETARHAEHQYPPQG---FN-------FMAGPTGPAATAR-FGNITLSAGFGLFPSLFGFQLHGFSETSGLGGGSSVHLGSAGGLAGSHMHGTQPIMPDQQQEALLSRLLLLLGVFVI 257          
The following BLAST results are available for this feature:
BLAST of NO14G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24656.14.600e-7568.24ring finger protein [Nannochloropsis gaditana][more]
CBJ31812.17.200e-3657.05conserved unknown protein [Ectocarpus siliculosus][more]
GAQ93251.12.400e-3140.43E3 ubiquitin-protein ligase RNF5 [Klebsormidium ni... [more]
OAE33371.11.700e-2938.89hypothetical protein AXG93_3296s1100 [Marchantia p... [more]
PTQ36552.16.500e-2938.63hypothetical protein MARPO_0063s0084 [Marchantia p... [more]
OQR94505.12.500e-2840.09ring finger protein 5 [Achlya hypogyna][more]
XP_008612458.13.200e-2838.50hypothetical protein SDRG_08354 [Saprolegnia dicli... [more]
ABK21979.14.200e-2839.29unknown [Picea sitchensis] >ABR17325.1 unknown [Pi... [more]
XP_009821658.14.200e-2839.83hypothetical protein H257_00605 [Aphanomyces astac... [more]
XP_024367794.16.100e-2738.84E3 ubiquitin-protein ligase RNF185-like [Physcomit... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002365NSK002365Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01660.1NO14G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100055g14gene5835Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01660.1NO14G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01660 ID=NO14G01660|Name=NO14G01660|organism=Nannochloropsis oceanica|type=gene|length=861bp
ATGGAGGGGGCACAAACTTCAGCAGCAGCAGCAGCAGCAACAACAACAGC
AACAGCAACAACAACCACAACAACAACAACAACAACAACAACAGCAGCAG
CAGCAGCATCTTCATCTTCAGCAGCATCTTCAGTGGCAGGCGGCGGACGA
GGGAGCAGTCGCAGCGCCACCCCAACCCAACATAGCGCGAGCCCGCAAGC
GAGCGGGGGAGATTCGCGCTTCGATTGCAATGTGTGCCTGTCGGAAGTTG
AGGATCCAGTTGTGACGCTGTGCGGACATTTGTACTGCTGGTCTTGTTTG
TACCGCTGGTTAAACACGAACCACACGTGCCCCGTGTGCAAGGCAGGAGT
CACCAAGGAAAACGTAATTCCTCTTTACGGGCGAGGGAGCGAGCAAGTGG
ACCCTCGGACGAAGACTCGGCGGGCAAGAGGCGGTGTGGGGACAGGACAG
GAAGCGACGGACGTGCCGGGACGCCCAACCGCACAGCGGCCACAAGCTAG
CACGTTTATCGGAGGCACGCCGGCTTTCATGGGAGGCCTTCCATTCAACG
CCTTCGGGACGACGAATCACTATACGGGAGGACCGGGGGGGATGGGAGGC
TCCGCTGCTGGCGGGGGCATGGTGTCGTTTTCGGCCGGTTTCGGCTTCTT
CCCATCCTTGTTCGGCCTTCAATTTCAAACTTTCGTACCCTCGTCCTCTT
CTTCCTTCGCTTCCGGTACAACGGCAGCTGGCACACGGGGAGCGACTGGC
GGAGGTGGAAGTGGGGTAAACTCGACAGCTGACGAAGCTCAGCAAGCCTT
CCTTTCCAAACTTCTGCTCATGCTGGGCATTTTTACGCTTGGCGTCTTGG
TCTTTTGCTAA
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protein sequence of NO14G01660.1

>NO14G01660.1-protein ID=NO14G01660.1-protein|Name=NO14G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MEGAQTSAAAAAATTTATATTTTTTTTTTTTAAAAASSSSAASSVAGGGR
GSSRSATPTQHSASPQASGGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCL
YRWLNTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQ
EATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGG
SAAGGGMVSFSAGFGFFPSLFGLQFQTFVPSSSSSFASGTTAAGTRGATG
GGGSGVNSTADEAQQAFLSKLLLMLGIFTLGVLVFC*
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Synonyms
Publications