NO14G01660.1, NO14G01660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01660.1
Unique NameNO14G01660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length861
Alignment locationchr14:516098..516958 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:516098..516958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G01660.1 vs.
Match: EWM24656.1 (ring finger protein [Nannochloropsis gaditana])

HSP 1 Score: 302.0 bits (772), Expect = 2.000e-78
Identity = 172/243 (70.78%), Postives = 184/243 (75.72%), Query Frame = 0
Query:   47 GGGRGSSRSATPTQ-HSASPQASGGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCLYRWLNTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQEATDVPGRPTAQRPQA----STFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGGSAAGGGMVSFSAGFGFFPSLFGLQFQTFVPSSSSSFASGTTAAGTRGATGGGGSGVNSTADEAQQAFLSKLLLMLGIFTLGVLV 285
            G   G SR ATPT  H     +S  DSRFDCNVCLSEV DPVVTLCGHLYCW CLYRWL+TNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRR  GG    +EATDVPGRP AQRP+A     +FIGG  AF+GG+PFN+FG  +HYTGG  G  G       VSFSAG GFFPSLFGLQFQTF PSSSSS A+      T+G  G  GSG  STADEAQQAFLSKLLL LGIFTLGVL+
Sbjct:   73 GRAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRR--GGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAA------TQGV-GFNGSGNGSTADEAQQAFLSKLLLTLGIFTLGVLI 306          
The following BLAST results are available for this feature:
BLAST of NO14G01660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24656.12.000e-7870.78ring finger protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01660NO14G01660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01660.1NO14G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01660.1.cds1NO14G01660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01660.1 ID=NO14G01660.1|Name=NO14G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
ATGGAGGGGGCACAAACTTCAGCAGCAGCAGCAGCAGCAACAACAACAGC
AACAGCAACAACAACCACAACAACAACAACAACAACAACAACAGCAGCAG
CAGCAGCATCTTCATCTTCAGCAGCATCTTCAGTGGCAGGCGGCGGACGA
GGGAGCAGTCGCAGCGCCACCCCAACCCAACATAGCGCGAGCCCGCAAGC
GAGCGGGGGAGATTCGCGCTTCGATTGCAATGTGTGCCTGTCGGAAGTTG
AGGATCCAGTTGTGACGCTGTGCGGACATTTGTACTGCTGGTCTTGTTTG
TACCGCTGGTTAAACACGAACCACACGTGCCCCGTGTGCAAGGCAGGAGT
CACCAAGGAAAACGTAATTCCTCTTTACGGGCGAGGGAGCGAGCAAGTGG
ACCCTCGGACGAAGACTCGGCGGGCAAGAGGCGGTGTGGGGACAGGACAG
GAAGCGACGGACGTGCCGGGACGCCCAACCGCACAGCGGCCACAAGCTAG
CACGTTTATCGGAGGCACGCCGGCTTTCATGGGAGGCCTTCCATTCAACG
CCTTCGGGACGACGAATCACTATACGGGAGGACCGGGGGGGATGGGAGGC
TCCGCTGCTGGCGGGGGCATGGTGTCGTTTTCGGCCGGTTTCGGCTTCTT
CCCATCCTTGTTCGGCCTTCAATTTCAAACTTTCGTACCCTCGTCCTCTT
CTTCCTTCGCTTCCGGTACAACGGCAGCTGGCACACGGGGAGCGACTGGC
GGAGGTGGAAGTGGGGTAAACTCGACAGCTGACGAAGCTCAGCAAGCCTT
CCTTTCCAAACTTCTGCTCATGCTGGGCATTTTTACGCTTGGCGTCTTGG
TCTTTTGCTAA
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protein sequence of NO14G01660.1

>NO14G01660.1-protein ID=NO14G01660.1-protein|Name=NO14G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MEGAQTSAAAAAATTTATATTTTTTTTTTTTAAAAASSSSAASSVAGGGR
GSSRSATPTQHSASPQASGGDSRFDCNVCLSEVEDPVVTLCGHLYCWSCL
YRWLNTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRARGGVGTGQ
EATDVPGRPTAQRPQASTFIGGTPAFMGGLPFNAFGTTNHYTGGPGGMGG
SAAGGGMVSFSAGFGFFPSLFGLQFQTFVPSSSSSFASGTTAAGTRGATG
GGGSGVNSTADEAQQAFLSKLLLMLGIFTLGVLVFC*
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mRNA from alignment at chr14:516098..516958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01660.1 ID=NO14G01660.1|Name=NO14G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=861bp|location=Sequence derived from alignment at chr14:516098..516958- (Nannochloropsis oceanica)
ATGGAGGGGGCACAAACTTCAGCAGCAGCAGCAGCAGCAACAACAACAGC AACAGCAACAACAACCACAACAACAACAACAACAACAACAACAGCAGCAG CAGCAGCATCTTCATCTTCAGCAGCATCTTCAGTGGCAGGCGGCGGACGA GGGAGCAGTCGCAGCGCCACCCCAACCCAACATAGCGCGAGCCCGCAAGC GAGCGGGGGAGATTCGCGCTTCGATTGCAATGTGTGCCTGTCGGAAGTTG AGGATCCAGTTGTGACGCTGTGCGGACATTTGTACTGCTGGTCTTGTTTG TACCGCTGGTTAAACACGAACCACACGTGCCCCGTGTGCAAGGCAGGAGT CACCAAGGAAAACGTAATTCCTCTTTACGGGCGAGGGAGCGAGCAAGTGG ACCCTCGGACGAAGACTCGGCGGGCAAGAGGCGGTGTGGGGACAGGACAG GAAGCGACGGACGTGCCGGGACGCCCAACCGCACAGCGGCCACAAGCTAG CACGTTTATCGGAGGCACGCCGGCTTTCATGGGAGGCCTTCCATTCAACG CCTTCGGGACGACGAATCACTATACGGGAGGACCGGGGGGGATGGGAGGC TCCGCTGCTGGCGGGGGCATGGTGTCGTTTTCGGCCGGTTTCGGCTTCTT CCCATCCTTGTTCGGCCTTCAATTTCAAACTTTCGTACCCTCGTCCTCTT CTTCCTTCGCTTCCGGTACAACGGCAGCTGGCACACGGGGAGCGACTGGC GGAGGTGGAAGTGGGGTAAACTCGACAGCTGACGAAGCTCAGCAAGCCTT CCTTTCCAAACTTCTGCTCATGCTGGGCATTTTTACGCTTGGCGTCTTGG TCTTTTGCTAA
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Coding sequence (CDS) from alignment at chr14:516098..516958-

>NO14G01660.1 ID=NO14G01660.1|Name=NO14G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr14:516098..516958- (Nannochloropsis oceanica)
ATGGAGGGGGCACAAACTTCAGCAGCAGCAGCAGCAGCAACAACAACAGC
AACAGCAACAACAACCACAACAACAACAACAACAACAACAACAGCAGCAG
CAGCAGCATCTTCATCTTCAGCAGCATCTTCAGTGGCAGGCGGCGGACGA
GGGAGCAGTCGCAGCGCCACCCCAACCCAACATAGCGCGAGCCCGCAAGC
GAGCGGGGGAGATTCGCGCTTCGATTGCAATGTGTGCCTGTCGGAAGTTG
AGGATCCAGTTGTGACGCTGTGCGGACATTTGTACTGCTGGTCTTGTTTG
TACCGCTGGTTAAACACGAACCACACGTGCCCCGTGTGCAAGGCAGGAGT
CACCAAGGAAAACGTAATTCCTCTTTACGGGCGAGGGAGCGAGCAAGTGG
ACCCTCGGACGAAGACTCGGCGGGCAAGAGGCGGTGTGGGGACAGGACAG
GAAGCGACGGACGTGCCGGGACGCCCAACCGCACAGCGGCCACAAGCTAG
CACGTTTATCGGAGGCACGCCGGCTTTCATGGGAGGCCTTCCATTCAACG
CCTTCGGGACGACGAATCACTATACGGGAGGACCGGGGGGGATGGGAGGC
TCCGCTGCTGGCGGGGGCATGGTGTCGTTTTCGGCCGGTTTCGGCTTCTT
CCCATCCTTGTTCGGCCTTCAATTTCAAACTTTCGTACCCTCGTCCTCTT
CTTCCTTCGCTTCCGGTACAACGGCAGCTGGCACACGGGGAGCGACTGGC
GGAGGTGGAAGTGGGGTAAACTCGACAGCTGACGAAGCTCAGCAAGCCTT
CCTTTCCAAACTTCTGCTCATGCTGGGCATTTTTACGCTTGGCGTCTTGG
TCTTTTGCTAA
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Synonyms
Publications