NO14G01300, NO14G01300 (gene) Nannochloropsis oceanica

Overview
NameNO14G01300
Unique NameNO14G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length425
Alignment locationchr14:416053..416477 +

Link to JBrowse

Properties
Property NameValue
DescriptionHistone H4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:416053..416477 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR035425CENP-T/H4_C
IPR001951Histone_H4
Homology
[Close]
BLAST of NO14G01300 vs. NCBI_GenBank
Match: GAX79584.1 (hypothetical protein CEUSTIGMA_g7025.t1 [Chlamydomonas eustigma])

HSP 1 Score: 199.1 bits (505), Expect = 6.600e-48
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTALDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of NO14G01300 vs. NCBI_GenBank
Match: GAX78506.1 (hypothetical protein CEUSTIGMA_g5945.t1 [Chlamydomonas eustigma])

HSP 1 Score: 199.1 bits (505), Expect = 6.600e-48
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTALDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of NO14G01300 vs. NCBI_GenBank
Match: PHT46786.1 (Histone H4 [Capsicum baccatum])

HSP 1 Score: 199.1 bits (505), Expect = 6.600e-48
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of NO14G01300 vs. NCBI_GenBank
Match: KXS13514.1 (histone-fold-containing protein [Gonapodya prolifera JEL478] >KXS13519.1 histone-fold-containing protein [Gonapodya prolifera JEL478])

HSP 1 Score: 198.7 bits (504), Expect = 8.600e-48
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHA+RKTVTALDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of NO14G01300 vs. NCBI_GenBank
Match: GAX75813.1 (hypothetical protein CEUSTIGMA_g3256.t1 [Chlamydomonas eustigma])

HSP 1 Score: 198.7 bits (504), Expect = 8.600e-48
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN+IRD+VTYTEHARRKTVTALDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of NO14G01300 vs. NCBI_GenBank
Match: CCA15305.1 (AlNc14C10G1266 [Albugo laibachii Nc14] >CCA21792.1 AlNc14C134G7038 [Albugo laibachii Nc14])

HSP 1 Score: 198.4 bits (503), Expect = 1.100e-47
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of NO14G01300 vs. NCBI_GenBank
Match: XP_003405712.1 (histone H4 [Loxodonta africana] >XP_020369810.1 histone H4-like [Rhincodon typus])

HSP 1 Score: 198.4 bits (503), Expect = 1.100e-47
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of NO14G01300 vs. NCBI_GenBank
Match: EJK63755.1 (hypothetical protein THAOC_15573, partial [Thalassiosira oceanica])

HSP 1 Score: 198.4 bits (503), Expect = 1.100e-47
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQG+TLYGFGG
Sbjct:  272 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 374
[Close]
BLAST of NO14G01300 vs. NCBI_GenBank
Match: EJK72475.1 (hypothetical protein THAOC_05990 [Thalassiosira oceanica])

HSP 1 Score: 198.4 bits (503), Expect = 1.100e-47
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQG+TLYGFGG
Sbjct:   15 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 117
[Close]
BLAST of NO14G01300 vs. NCBI_GenBank
Match: XP_008614758.1 (histone H4 [Saprolegnia diclina VS20] >XP_008615724.1 histone H4 [Saprolegnia diclina VS20] >XP_012195218.1 histone H4 [Saprolegnia parasitica CBS 223.65] >XP_012200782.1 histone H4 [Saprolegnia parasitica CBS 223.65] >XP_012200783.1 histone H4 [Saprolegnia parasitica CBS 223.65] >XP_012201825.1 histone H4 [Saprolegnia parasitica CBS 223.65] >XP_012202020.1 histone H4 [Saprolegnia parasitica CBS 223.65] >XP_012202548.1 histone H4, partial [Saprolegnia parasitica CBS 223.65] >XP_012202549.1 histone H4 [Saprolegnia parasitica CBS 223.65] >XP_012211615.1 histone H4 [Saprolegnia parasitica CBS 223.65] >EQC30986.1 histone H4 [Saprolegnia diclina VS20] >EQC31751.1 histone H4 [Saprolegnia diclina VS20] >KDO17680.1 histone H4 [Saprolegnia parasitica CBS 223.65] >KDO26682.1 histone H4, partial [Saprolegnia parasitica CBS 223.65] >KDO26683.1 histone H4 [Saprolegnia parasitica CBS 223.65] >KDO27243.1 histone H4 [Saprolegnia parasitica CBS 223.65] >KDO27385.1 histone H4 [Saprolegnia parasitica CBS 223.65] >KDO28334.1 histone H4 [Saprolegnia parasitica CBS 223.65] >KDO28335.1 histone H4 [Saprolegnia parasitica CBS 223.65] >KDO34169.1 histone H4 [Saprolegnia parasitica CBS 223.65] >OQR83143.1 histone H4 [Achlya hypogyna] >OQR84471.1 histone H4 [Achlya hypogyna] >OQR86297.1 histone H4 [Achlya hypogyna] >OQS07270.1 histone H4 [Thraustotheca clavata])

HSP 1 Score: 198.4 bits (503), Expect = 1.100e-47
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVI+DSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIKDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of NO14G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX79584.16.600e-4899.03hypothetical protein CEUSTIGMA_g7025.t1 [Chlamydom... [more]
GAX78506.16.600e-4899.03hypothetical protein CEUSTIGMA_g5945.t1 [Chlamydom... [more]
PHT46786.16.600e-4898.06Histone H4 [Capsicum baccatum][more]
KXS13514.18.600e-4898.06histone-fold-containing protein [Gonapodya prolife... [more]
GAX75813.18.600e-4898.06hypothetical protein CEUSTIGMA_g3256.t1 [Chlamydom... [more]
CCA15305.11.100e-4798.06AlNc14C10G1266 [Albugo laibachii Nc14] >CCA21792.1... [more]
XP_003405712.11.100e-4798.06histone H4 [Loxodonta africana] >XP_020369810.1 hi... [more]
EJK63755.11.100e-4798.06hypothetical protein THAOC_15573, partial [Thalass... [more]
EJK72475.11.100e-4798.06hypothetical protein THAOC_05990 [Thalassiosira oc... [more]
XP_008614758.11.100e-4798.06histone H4 [Saprolegnia diclina VS20] >XP_00861572... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002329NSK002329Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01300.1NO14G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590030gene_5698Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100123g11gene5804Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01300.1NO14G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01300 ID=NO14G01300|Name=NO14G01300|organism=Nannochloropsis oceanica|type=gene|length=425bp
AACACCACAGTTTAAACTCCCCACCTCAATCAATCATGTCTGGACGCGGC
AAGGGCGGCAAGGGCCTCGGCAAGGGCGGCGCTAAGCGCCACCGCAAGGT
GTTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCATCCGCCGTTTGG
CTCGTCGAGGCGGTGTCAAGCGTATCTCGGGCCTGATCTACGAGGAGACC
CGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTTAC
CTACACCGAGCACGCCCGCCGCAAGACCGTCACGGCCCTCGACGTCGTGT
ACGCGCTCAAGCGACAAGGCCGCACCCTCTACGGGTTCGGTGGCTAAACG
CTTTTTGTTGGGACGACATCTTACAACAACAAAAAACCAAAGCACCCAGG
GTTTTCATAAAACCCCTCTCAAACA
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protein sequence of NO14G01300.1

>NO14G01300.1-protein ID=NO14G01300.1-protein|Name=NO14G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYG
FGG*
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Synonyms
Publications