NO14G01300.1, NO14G01300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01300.1
Unique NameNO14G01300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length425
Alignment locationchr14:416053..416477 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:416053..416477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G01300.1 vs.
Match: EWM24676.1 (histone h4 [Nannochloropsis gaditana])

HSP 1 Score: 200.3 bits (508), Expect = 3.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 103          
The following BLAST results are available for this feature:
BLAST of NO14G01300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24676.13.000e-48100.00histone h4 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01300NO14G01300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01300.1NO14G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01300.1.cds1NO14G01300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01300.1 ID=NO14G01300.1|Name=NO14G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=425bp
AACACCACAGTTTAAACTCCCCACCTCAATCAATCATGTCTGGACGCGGC
AAGGGCGGCAAGGGCCTCGGCAAGGGCGGCGCTAAGCGCCACCGCAAGGT
GTTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCATCCGCCGTTTGG
CTCGTCGAGGCGGTGTCAAGCGTATCTCGGGCCTGATCTACGAGGAGACC
CGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTTAC
CTACACCGAGCACGCCCGCCGCAAGACCGTCACGGCCCTCGACGTCGTGT
ACGCGCTCAAGCGACAAGGCCGCACCCTCTACGGGTTCGGTGGCTAAACG
CTTTTTGTTGGGACGACATCTTACAACAACAAAAAACCAAAGCACCCAGG
GTTTTCATAAAACCCCTCTCAAACA
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protein sequence of NO14G01300.1

>NO14G01300.1-protein ID=NO14G01300.1-protein|Name=NO14G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at chr14:416053..416477+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01300.1 ID=NO14G01300.1|Name=NO14G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=425bp|location=Sequence derived from alignment at chr14:416053..416477+ (Nannochloropsis oceanica)
AACACCACAGTTTAAACTCCCCACCTCAATCAATCATGTCTGGACGCGGC AAGGGCGGCAAGGGCCTCGGCAAGGGCGGCGCTAAGCGCCACCGCAAGGT GTTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCATCCGCCGTTTGG CTCGTCGAGGCGGTGTCAAGCGTATCTCGGGCCTGATCTACGAGGAGACC CGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTTAC CTACACCGAGCACGCCCGCCGCAAGACCGTCACGGCCCTCGACGTCGTGT ACGCGCTCAAGCGACAAGGCCGCACCCTCTACGGGTTCGGTGGCTAAACG CTTTTTGTTGGGACGACATCTTACAACAACAAAAAACCAAAGCACCCAGG GTTTTCATAAAACCCCTCTCAAACA
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Coding sequence (CDS) from alignment at chr14:416053..416477+

>NO14G01300.1 ID=NO14G01300.1|Name=NO14G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at chr14:416053..416477+ (Nannochloropsis oceanica)
ATGTCTGGACGCGGCAAGGGCGGCAAGGGCCTCGGCAAGGGCGGCGCTAA
GCGCCACCGCAAGGTGTTGCGCGACAACATCCAGGGCATTACCAAGCCCG
CCATCCGCCGTTTGGCTCGTCGAGGCGGTGTCAAGCGTATCTCGGGCCTG
ATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTCAT
CCGTGACTCCGTTACCTACACCGAGCACGCCCGCCGCAAGACCGTCACGG
CCCTCGACGTCGTGTACGCGCTCAAGCGACAAGGCCGCACCCTCTACGGG
TTCGGTGGCTAA
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Synonyms
Publications