NO14G01270, NO14G01270 (gene) Nannochloropsis oceanica

Overview
NameNO14G01270
Unique NameNO14G01270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length600
Alignment locationchr14:411107..411706 -

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Properties
Property NameValue
DescriptionMitochondrial inner membrane protease subunit 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:411107..411706 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008236serine-type peptidase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036286LexA/Signal_pep-like_sf
IPR015927Peptidase_S24_S26A/B/C
IPR000223Pept_S26A_signal_pept_1
Homology
BLAST of NO14G01270 vs. NCBI_GenBank
Match: XP_005853683.1 (mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana CCMP526] >EKU22677.1 mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana CCMP526] >EWM24682.1 mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 382.1 bits (980), Expect = 1.100e-102
Identity = 177/199 (88.94%), Postives = 189/199 (94.97%), Query Frame = 0
Query:    1 MAWRGAFRSFFTRARTRYMRGSAELLDETRYNVVDLVKFSCTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPGNTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYPLLEFGPLPRTYRKPGVIYPKLDMETGISR 200
            MAWRGAFRSFF+RAR RYMR SAELLDETRYNVVDLVKFSCTLYCLH+YVADVTALAGPSMLPTFNEAGDIVVV+CLHVKL RPL+KGDIVIARSP+NP NTVCKRVLGLPGDRILIQPQ+WYQQEQVL++PPGMLWLEGDNPFNSTDSR+YGPVPMALVKGLV FKLYPL EFGPLPRT+R+PG  YPKLD ETGI +
Sbjct:    1 MAWRGAFRSFFSRARARYMRSSAELLDETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIRK 199          
BLAST of NO14G01270 vs. NCBI_GenBank
Match: GBG29493.1 (Mitochondrial inner membrane protease subunit 1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 172.2 bits (435), Expect = 1.700e-39
Identity = 79/147 (53.74%), Postives = 110/147 (74.83%), Query Frame = 0
Query:   31 YNVVDLVKFSCTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPGNTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYPLLEFGPL 178
            +N   L+KF   LY ++ YV +VT   GPSMLPTF+ AGDIV+V+ +   L   +EKGDIVIA+SPTNP  TVCKRV G+PG+R+ +  ++ Y++++++++P G +WLEGDNP NSTDSR+YG VPM L+KG V F+L+PL   GP+
Sbjct:  129 HNSWKLLKFGSFLYVVNTYVFEVTMCVGPSMLPTFSSAGDIVLVDRIS-PLRLKIEKGDIVIAQSPTNPRQTVCKRVKGMPGERVRVAQRYSYERDRIVKVPKGRVWLEGDNPKNSTDSRAYGAVPMGLIKGRVFFRLWPLTAIGPV 274          
BLAST of NO14G01270 vs. NCBI_GenBank
Match: GAQ84474.1 (Peptidase S24/S26A/S26B/S26C family protein [Klebsormidium nitens])

HSP 1 Score: 151.8 bits (382), Expect = 2.300e-33
Identity = 71/140 (50.71%), Postives = 94/140 (67.14%), Query Frame = 0
Query:   36 LVKFSCTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPGNTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYPLLEFG 176
            +V+F   +YC   YV DVT   GPSMLP+FN  G+I+ V  +  +L R L+ GD+V A+SP NP   +CKR+LGL GDRI + P       +++ +P G +WL+GDN F S DSR YGPVP ALVKG VVFK++P  +FG
Sbjct:   19 VVQFGSFIYCFGTYVMDVTTCVGPSMLPSFNAEGNIIFVEHISPRLGR-LKAGDVVTAQSPRNPNAVICKRILGLEGDRIRVPPTMPRDSIRLVTVPKGHVWLQGDNQFVSRDSREYGPVPAALVKGKVVFKIWPPSQFG 157          
BLAST of NO14G01270 vs. NCBI_GenBank
Match: XP_002507898.1 (predicted protein [Micromonas commoda] >ACO69156.1 predicted protein [Micromonas commoda])

HSP 1 Score: 147.1 bits (370), Expect = 5.700e-32
Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = 0
Query:   41 CTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPGNTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYPLLEFGPLPR 180
            C +  +H+Y   VT   GPSMLPTFN +GD V+V  L V ++  + +GDIVIA+SPTNP +TVCKRVLG  GD I +     +   Q +E+PPG +WL+GDN  NSTDSR YGPVP  +++G V  K++PL E G + R
Sbjct:    3 CLVNVIHNYGVHVTMCLGPSMLPTFNRSGDFVLVEQLSV-MTDNIRRGDIVIAKSPTNPRHTVCKRVLGRGGDVIAVPKAGSFGGTQRVEVPPGHIWLQGDNKDNSTDSRDYGPVPFGMLRGKVFLKVWPLSELGYVAR 140          
BLAST of NO14G01270 vs. NCBI_GenBank
Match: EXX54857.1 (Imp1p [Rhizophagus irregularis DAOM 197198w] >GBC48621.1 signal peptidase I [Rhizophagus irregularis DAOM 181602] >PKC15634.1 mitochondrial inner membrane protease subunit 1 [Rhizophagus irregularis] >PKC64365.1 mitochondrial inner membrane protease subunit 1 [Rhizophagus irregularis] >PKY24660.1 mitochondrial inner membrane protease subunit 1 [Rhizophagus irregularis] >PKY54988.1 mitochondrial inner membrane protease subunit 1 [Rhizophagus irregularis] >POG65028.1 hypothetical protein GLOIN_2v1670191 [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 146.4 bits (368), Expect = 9.700e-32
Identity = 70/134 (52.24%), Postives = 93/134 (69.40%), Query Frame = 0
Query:   37 VKFSCTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPGNTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYP 171
            +KF+C ++ + ++V +VT   GPSMLPTFN  GDIVV+     KL R LE GD+V+  SPTNP   VCKR+LG+PGDRI I P       + + +P G +WL+GDN  NSTDSRSYGPVP AL++G V  +++P
Sbjct:   19 IKFACFVHLIGEHVTEVTMCIGPSMLPTFNMIGDIVVLEHFSPKLKR-LEIGDVVVCISPTNPWRAVCKRILGMPGDRICIDPT--VINRKYIIVPRGHVWLQGDNMSNSTDSRSYGPVPYALIRGRVFARIWP 149          
BLAST of NO14G01270 vs. NCBI_GenBank
Match: XP_016611042.1 (hypothetical protein SPPG_08982 [Spizellomyces punctatus DAOM BR117] >KND03003.1 hypothetical protein SPPG_08982 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 146.0 bits (367), Expect = 1.300e-31
Identity = 74/164 (45.12%), Postives = 102/164 (62.20%), Query Frame = 0
Query:   37 VKFSCTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHV-KLSRPLEKGDIVIARSPTNPGNTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYPLLEFGPLPRTYRKPGVIYPKLDMETGISR 200
            V+  C +    +YVA+VT   GPSMLPTFN  GDIVVV   HV +  R L+ GD+V+  SPTNP   +CKRVLGLPGD + + P     + + + +PPG +WL+GDN  NSTDSR YGPV + L++G V+ K++P  E+    R   +  +  P +D E  + R
Sbjct:   20 VQGGCVMLLFQNYVAEVTMCIGPSMLPTFNIVGDIVVVE--HVSRHYRKLDLGDVVVCVSPTNPQKAICKRVLGLPGDFVCVDPTL--SERRYITVPPGHIWLQGDNFTNSTDSRKYGPVSLGLLRGRVLCKIWPNFEW---IRNGFEEQISQPSMDRELVVER 176          
BLAST of NO14G01270 vs. NCBI_GenBank
Match: PTQ49663.1 (hypothetical protein MARPO_0002s0138 [Marchantia polymorpha])

HSP 1 Score: 145.6 bits (366), Expect = 1.700e-31
Identity = 71/153 (46.41%), Postives = 100/153 (65.36%), Query Frame = 0
Query:   25 LLDETRYNVVDLVKFSCTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPGNTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYPLLEFGPL 178
            L+ E     V   +F C L+   ++V  V    GPSMLPTFN AGDI+++  L VK  + +  GD+V+ARSP NP   VCKRVLGL GDR+++ P       + + +P G +WL+GDN +NSTDSR YGPVP AL++G V ++++PL  +GP+
Sbjct:    7 LMQEAWERSVVFTQFLCFLHVFSNHVCQVHQCLGPSMLPTFNVAGDILLLEHLSVKFEK-VRSGDVVMARSPVNPRVMVCKRVLGLEGDRVVVLPTNSKGHIRHVVVPKGHVWLQGDNIYNSTDSRHYGPVPYALIQGKVCYRIWPLEGWGPV 158          
BLAST of NO14G01270 vs. NCBI_GenBank
Match: XP_003058067.1 (predicted protein, partial [Micromonas pusilla CCMP1545] >EEH58018.1 predicted protein, partial [Micromonas pusilla CCMP1545])

HSP 1 Score: 140.6 bits (353), Expect = 5.300e-30
Identity = 69/136 (50.74%), Postives = 92/136 (67.65%), Query Frame = 0
Query:   41 CTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSR-PLEKGDIVIARSPTNPGNTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYPLLEFG 176
            C +  +H+Y  +VT   GPSMLPTFN +GD+V++   HV + R  +E GD+VIA+SP+NP +TVCKRVLG  GD I +     +     +E+P G LWL+GDN  NSTDSR YGPVP AL++G V  K++P  E G
Sbjct:    1 CLVSVVHNYGVEVTMCLGPSMLPTFNRSGDVVLME--HVSVMRNAIETGDVVIAKSPSNPRHTVCKRVLGRGGDVIHVPKAGHFGGTMRVEVPTGHLWLQGDNKDNSTDSRDYGPVPYALLRGKVFVKVWPPSEIG 134          
BLAST of NO14G01270 vs. NCBI_GenBank
Match: XP_005827897.1 (hypothetical protein GUITHDRAFT_88558 [Guillardia theta CCMP2712] >EKX40917.1 hypothetical protein GUITHDRAFT_88558 [Guillardia theta CCMP2712])

HSP 1 Score: 140.6 bits (353), Expect = 5.300e-30
Identity = 67/142 (47.18%), Postives = 97/142 (68.31%), Query Frame = 0
Query:   36 LVKFSCTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPGNTVCKRVLGL--PGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYPLLEFG 176
            L++F C L+C H+++ DVT   GPSM+PTFN  GD+V+V     +  + L  GD+V+A+SPTNP  TVCKR+ G+   G++   +P        V+++P G +WL+GDN  NSTDSR YGPVP+AL++G V +K++PL E G
Sbjct:   11 LLQFGCLLHCFHEHILDVTICIGPSMIPTFNLEGDVVLVEFWTTRRQK-LVNGDVVVAKSPTNPKQTVCKRICGMRREGEK---RPDI--NPHGVVQVPDGHVWLQGDNLPNSTDSRHYGPVPLALIRGKVFYKIWPLGEAG 146          
BLAST of NO14G01270 vs. NCBI_GenBank
Match: KNE55016.1 (hypothetical protein AMAG_00953 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 140.6 bits (353), Expect = 5.300e-30
Identity = 65/140 (46.43%), Postives = 93/140 (66.43%), Query Frame = 0
Query:   31 YNVVDLVKFSCTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPGNTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYP 171
            ++ +  VK    ++  + YVA+VT   GPSMLPTFN  GD V+++ +  +L R +E GD+V+A S +NP   VCKR+ G+PGD I + P       + L++P G +WL GDN  NSTDSR+YGPVP ALVKG V+ +++P
Sbjct:   15 HHALFFVKLGAFIHVFNSYVAEVTMCMGPSMLPTFNMLGDFVLIDKISPRLGR-IELGDVVVATSLSNPDRVVCKRITGMPGDVICVDPSHDAASREYLKVPRGHVWLSGDNFSNSTDSRNYGPVPFALVKGKVLARIWP 153          
The following BLAST results are available for this feature:
BLAST of NO14G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853683.11.100e-10288.94mitochondrial inner membrane protease subunit 1 [N... [more]
GBG29493.11.700e-3953.74Mitochondrial inner membrane protease subunit 1 [A... [more]
GAQ84474.12.300e-3350.71Peptidase S24/S26A/S26B/S26C family protein [Klebs... [more]
XP_002507898.15.700e-3251.08predicted protein [Micromonas commoda] >ACO69156.1... [more]
EXX54857.19.700e-3252.24Imp1p [Rhizophagus irregularis DAOM 197198w] >GBC4... [more]
XP_016611042.11.300e-3145.12hypothetical protein SPPG_08982 [Spizellomyces pun... [more]
PTQ49663.11.700e-3146.41hypothetical protein MARPO_0002s0138 [Marchantia p... [more]
XP_003058067.15.300e-3050.74predicted protein, partial [Micromonas pusilla CCM... [more]
XP_005827897.15.300e-3047.18hypothetical protein GUITHDRAFT_88558 [Guillardia ... [more]
KNE55016.15.300e-3046.43hypothetical protein AMAG_00953 [Allomyces macrogy... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002325NSK002325Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01270.1NO14G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590020gene_5695Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100123g14gene5801Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01270.1NO14G01270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01270 ID=NO14G01270|Name=NO14G01270|organism=Nannochloropsis oceanica|type=gene|length=600bp
ATGGCCTGGCGCGGCGCCTTTCGCTCCTTCTTCACGCGGGCCCGGACTCG
CTACATGCGCGGCTCCGCCGAGTTGTTGGACGAAACCCGTTACAACGTTG
TGGACCTGGTCAAGTTCAGTTGCACACTTTACTGCCTCCACGACTACGTC
GCCGATGTGACGGCCTTGGCAGGCCCCTCCATGCTCCCTACCTTTAACGA
AGCTGGGGACATCGTCGTCGTGAATTGTCTGCACGTCAAGCTAAGCAGAC
CCCTGGAAAAAGGTGATATAGTCATTGCCCGCTCCCCCACCAACCCAGGC
AATACGGTCTGTAAGCGGGTCCTCGGCCTGCCAGGCGACCGCATTTTAAT
ACAACCACAATTCTGGTACCAACAAGAGCAAGTCCTTGAAATTCCTCCCG
GCATGCTCTGGCTGGAGGGAGACAATCCATTCAATTCGACCGATTCGCGG
TCATATGGTCCTGTGCCAATGGCACTGGTCAAGGGCTTGGTTGTATTTAA
ACTCTACCCTCTCTTGGAATTTGGACCCTTGCCACGGACGTATCGGAAGC
CTGGAGTGATATATCCAAAATTGGACATGGAGACGGGTATAAGCAGATAA
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protein sequence of NO14G01270.1

>NO14G01270.1-protein ID=NO14G01270.1-protein|Name=NO14G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MAWRGAFRSFFTRARTRYMRGSAELLDETRYNVVDLVKFSCTLYCLHDYV
ADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPG
NTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSR
SYGPVPMALVKGLVVFKLYPLLEFGPLPRTYRKPGVIYPKLDMETGISR*
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Synonyms
Publications