NO14G01270.1, NO14G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01270.1
Unique NameNO14G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length600
Alignment locationchr14:411107..411706 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:411107..411706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01270.1 vs.
Match: XP_005853683.1 (mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana CCMP526]; EKU22677.1 mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana CCMP526]; EWM24682.1 mitochondrial inner membrane protease subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 382.1 bits (980), Expect = 1.100e-102
Identity = 177/199 (88.94%), Postives = 189/199 (94.97%), Query Frame = 0 
Query:    1 MAWRGAFRSFFTRARTRYMRGSAELLDETRYNVVDLVKFSCTLYCLHDYVADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPGNTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSRSYGPVPMALVKGLVVFKLYPLLEFGPLPRTYRKPGVIYPKLDMETGISR 200
            MAWRGAFRSFF+RAR RYMR SAELLDETRYNVVDLVKFSCTLYCLH+YVADVTALAGPSMLPTFNEAGDIVVV+CLHVKL RPL+KGDIVIARSP+NP NTVCKRVLGLPGDRILIQPQ+WYQQEQVL++PPGMLWLEGDNPFNSTDSR+YGPVPMALVKGLV FKLYPL EFGPLPRT+R+PG  YPKLD ETGI +
Sbjct:    1 MAWRGAFRSFFSRARARYMRSSAELLDETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPSNPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPLPRTFRRPGARYPKLDRETGIRK 199
The following BLAST results are available for this feature:
BLAST of NO14G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853683.11.100e-10288.94mitochondrial inner membrane protease subunit 1 [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01270NO14G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01270.1NO14G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01270.1.cds1NO14G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01270.1 ID=NO14G01270.1|Name=NO14G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
ATGGCCTGGCGCGGCGCCTTTCGCTCCTTCTTCACGCGGGCCCGGACTCG
CTACATGCGCGGCTCCGCCGAGTTGTTGGACGAAACCCGTTACAACGTTG
TGGACCTGGTCAAGTTCAGTTGCACACTTTACTGCCTCCACGACTACGTC
GCCGATGTGACGGCCTTGGCAGGCCCCTCCATGCTCCCTACCTTTAACGA
AGCTGGGGACATCGTCGTCGTGAATTGTCTGCACGTCAAGCTAAGCAGAC
CCCTGGAAAAAGGTGATATAGTCATTGCCCGCTCCCCCACCAACCCAGGC
AATACGGTCTGTAAGCGGGTCCTCGGCCTGCCAGGCGACCGCATTTTAAT
ACAACCACAATTCTGGTACCAACAAGAGCAAGTCCTTGAAATTCCTCCCG
GCATGCTCTGGCTGGAGGGAGACAATCCATTCAATTCGACCGATTCGCGG
TCATATGGTCCTGTGCCAATGGCACTGGTCAAGGGCTTGGTTGTATTTAA
ACTCTACCCTCTCTTGGAATTTGGACCCTTGCCACGGACGTATCGGAAGC
CTGGAGTGATATATCCAAAATTGGACATGGAGACGGGTATAAGCAGATAA
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protein sequence of NO14G01270.1

>NO14G01270.1-protein ID=NO14G01270.1-protein|Name=NO14G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MAWRGAFRSFFTRARTRYMRGSAELLDETRYNVVDLVKFSCTLYCLHDYV
ADVTALAGPSMLPTFNEAGDIVVVNCLHVKLSRPLEKGDIVIARSPTNPG
NTVCKRVLGLPGDRILIQPQFWYQQEQVLEIPPGMLWLEGDNPFNSTDSR
SYGPVPMALVKGLVVFKLYPLLEFGPLPRTYRKPGVIYPKLDMETGISR*
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mRNA from alignment at chr14:411107..411706-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01270.1 ID=NO14G01270.1|Name=NO14G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=600bp|location=Sequence derived from alignment at chr14:411107..411706- (Nannochloropsis oceanica)
ATGGCCTGGCGCGGCGCCTTTCGCTCCTTCTTCACGCGGGCCCGGACTCG
CTACATGCGCGGCTCCGCCGAGTTGTTGGACGAAACCCGTTACAACGTTG
TGGACCTGGTCAAGTTCAGTTGCACACTTTACTGCCTCCACGACTACGTC
GCCGATGTGACGGCCTTGGCAGGCCCCTCCATGCTCCCTACCTTTAACGA
AGCTGGGGACATCGTCGTCGTGAATTGTCTGCACGTCAAGCTAAGCAGAC
CCCTGGAAAAAGGTGATATAGTCATTGCCCGCTCCCCCACCAACCCAGGC
AATACGGTCTGTAAGCGGGTCCTCGGCCTGCCAGGCGACCGCATTTTAAT
ACAACCACAATTCTGGTACCAACAAGAGCAAGTCCTTGAAATTCCTCCCG
GCATGCTCTGGCTGGAGGGAGACAATCCATTCAATTCGACCGATTCGCGG
TCATATGGTCCTGTGCCAATGGCACTGGTCAAGGGCTTGGTTGTATTTAA
ACTCTACCCTCTCTTGGAATTTGGACCCTTGCCACGGACGTATCGGAAGC
CTGGAGTGATATATCCAAAATTGGACATGGAGACGGGTATAAGCAGATAA
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Coding sequence (CDS) from alignment at chr14:411107..411706-

>NO14G01270.1 ID=NO14G01270.1|Name=NO14G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr14:411107..411706- (Nannochloropsis oceanica)
ATGGCCTGGCGCGGCGCCTTTCGCTCCTTCTTCACGCGGGCCCGGACTCG
CTACATGCGCGGCTCCGCCGAGTTGTTGGACGAAACCCGTTACAACGTTG
TGGACCTGGTCAAGTTCAGTTGCACACTTTACTGCCTCCACGACTACGTC
GCCGATGTGACGGCCTTGGCAGGCCCCTCCATGCTCCCTACCTTTAACGA
AGCTGGGGACATCGTCGTCGTGAATTGTCTGCACGTCAAGCTAAGCAGAC
CCCTGGAAAAAGGTGATATAGTCATTGCCCGCTCCCCCACCAACCCAGGC
AATACGGTCTGTAAGCGGGTCCTCGGCCTGCCAGGCGACCGCATTTTAAT
ACAACCACAATTCTGGTACCAACAAGAGCAAGTCCTTGAAATTCCTCCCG
GCATGCTCTGGCTGGAGGGAGACAATCCATTCAATTCGACCGATTCGCGG
TCATATGGTCCTGTGCCAATGGCACTGGTCAAGGGCTTGGTTGTATTTAA
ACTCTACCCTCTCTTGGAATTTGGACCCTTGCCACGGACGTATCGGAAGC
CTGGAGTGATATATCCAAAATTGGACATGGAGACGGGTATAAGCAGATAA
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Synonyms
Publications