NO14G00110, NO14G00110 (gene) Nannochloropsis oceanica

Overview
NameNO14G00110
Unique NameNO14G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1973
Alignment locationchr14:33084..35056 -

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Properties
Property NameValue
DescriptionGlycoprotein fp21
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:33084..35056 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016072Skp1_comp_dimer
IPR036296SKP1-like_dim_sf
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Homology
BLAST of NO14G00110 vs. NCBI_GenBank
Match: EWM24786.1 (glycoprotein fp21 [Nannochloropsis gaditana])

HSP 1 Score: 185.7 bits (470), Expect = 1.400e-43
Identity = 100/160 (62.50%), Postives = 119/160 (74.38%), Query Frame = 0
Query:    1 MNVRIILKNGQELDAAVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXLTLPTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQEEYSDYIQSLSYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEAVGRE 161
            MNVRI+LKNGQELDA V+AA                           L LP+VEK  FE V+RFLR+HA   + DIPKPI ++SLGE+VQ+EYS++I+SL YRDL+QV+ELAHFLVL+PLLRL+LAR+HF+LKATPLEEFKRLFLFQNDLT EEE V RE
Sbjct:    1 MNVRIVLKNGQELDAPVEAA---LLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRE 157          
BLAST of NO14G00110 vs. NCBI_GenBank
Match: XP_003879810.1 (protein F46A9.4, confirmed by transcript evidence, related [Neospora caninum Liverpool] >CBZ49775.1 protein F46A9.4, confirmed by transcript evidence, related [Neospora caninum Liverpool] >CEL64363.1 TPA: Protein F46A9.4, confirmed by transcript evidence, related [Neospora caninum Liverpool])

HSP 1 Score: 68.2 bits (165), Expect = 3.200e-8
Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 0
Query:   48 LTLPTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQEEYSDYIQSLSYRDLIQVLEL-AHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEAVGRE 161
            + LP VE    + ++ +   H +    +IPKP+  S+L EVV E    +I   S + ++  L L A++L ++PLL L++A++  ++KA   EE +R+F   ND TPEEEA  RE
Sbjct:   49 IPLPNVETCILKKIIEYCEHHYNNPPEEIPKPLKSSNLAEVVSEWDFQFINENSDQKILFALILAANYLNIKPLLDLSVAKVATMIKAKTPEEIRRIFNIVNDFTPEEEAQVRE 162          
BLAST of NO14G00110 vs. NCBI_GenBank
Match: XP_002369572.1 (suppressor of kinetochore protein 1, putative [Toxoplasma gondii ME49] >XP_008886921.1 suppressor of kinetochore protein 1, putative [Hammondia hammondi] >CAJ20499.1 skp1 family protein, putative [Toxoplasma gondii RH] >EPR57985.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii GT1] >EPT32444.1 suppressor of kinetochore protein 1, putative [Toxoplasma gondii ME49] >ESS29388.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii VEG] >KEP62514.1 suppressor of kinetochore protein 1, putative [Hammondia hammondi] >KFG30630.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii p89] >KFG35139.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii GAB2-2007-GAL-DOM2] >KFG49136.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii FOU] >KFG60660.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii RUB] >KFH05742.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii VAND] >KFH15625.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii MAS] >CEL71630.1 TPA: S-phase kinase-associated protein, putative [Toxoplasma gondii VEG] >KYF41405.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii ARI] >KYK68439.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii TgCatPRC2] >PIL98491.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii COUG] >PUA88338.1 putative suppressor of kinetochore protein 1 [Toxoplasma gondii TgCATBr9])

HSP 1 Score: 67.0 bits (162), Expect = 7.200e-8
Identity = 39/114 (34.21%), Postives = 66/114 (57.89%), Query Frame = 0
Query:   48 LTLPTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQE-EYSDYIQSLSYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEAVGRE 161
            + LP V+    + ++ +   H      +IPKP+  S+L EVV E +Y    ++   + L  ++  A++L ++PLL L++A++  ++KA   EE +R+F   ND TPEEEA  RE
Sbjct:   49 IPLPNVDTCILKKIIEYCEHHXXXPPEEIPKPLKSSNLAEVVSEWDYQFINENSDQKILFALILAANYLNIKPLLDLSVAKVATMIKAKTPEEIRRIFNIVNDFTPEEEAQVRE 162          
BLAST of NO14G00110 vs. NCBI_GenBank
Match: PFH31746.1 (putative suppressor of kinetochore protein 1 [Besnoitia besnoiti])

HSP 1 Score: 67.0 bits (162), Expect = 7.200e-8
Identity = 39/114 (34.21%), Postives = 67/114 (58.77%), Query Frame = 0
Query:   48 LTLPTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQE-EYSDYIQSLSYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEAVGRE 161
            + LP VE    + ++ +   H +    +IPKP+  S+L EVV E +Y    ++   + L  ++  A++L ++PLL L++A++  ++K+   EE +R+F   ND TPEEEA  RE
Sbjct:   49 IPLPNVETCILKKIIEYCEHHYNNLPEEIPKPLKSSNLAEVVSEWDYQFINENSDQKILFALILAANYLNIKPLLDLSVAKVATMIKSKTPEEIRRIFNIVNDFTPEEEAQVRE 162          
BLAST of NO14G00110 vs. NCBI_GenBank
Match: XP_009033202.1 (hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens] >EGB12114.1 hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens])

HSP 1 Score: 66.6 bits (161), Expect = 9.400e-8
Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 0
Query:   48 LTLPTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQEEYSDYIQSLSYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEAVGRE 161
            + LP V+      V+ F R +A   M +I KP+  +++ EVVQE Y++Y+  +    L +++  A+++ ++PLL L  A +  ++K    EE ++ F   ND TPEEEA  RE
Sbjct:   38 IPLPNVKSHVLAKVIEFCRRYAEEPMSEIEKPLKSANMHEVVQEWYANYV-DVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVRE 149          
BLAST of NO14G00110 vs. NCBI_GenBank
Match: EWM25403.1 (glycoprotein fp21 [Nannochloropsis gaditana])

HSP 1 Score: 66.6 bits (161), Expect = 9.400e-8
Identity = 38/113 (33.63%), Postives = 66/113 (58.41%), Query Frame = 0
Query:   48 LTLPTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQEEYSDYIQSLSYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEAVGRE 161
            + LP V+      V+ F + H    M+DI KP+  +++ EVVQ+ Y++++ ++    L +++  A+++ ++PLL L  A +  ++K    EE +R F   ND TPEEEA  RE
Sbjct:  101 IPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFV-NVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVRE 212          
BLAST of NO14G00110 vs. NCBI_GenBank
Match: PHJ26138.1 (suppressor of kinetochore protein 1 [Cystoisospora suis])

HSP 1 Score: 64.3 bits (155), Expect = 4.700e-7
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 0
Query:   48 LTLPTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQEEYSDYIQSLSYRDLIQVLEL-AHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEAVGRE 161
            + LP VE      V+ +   H +    +IPKP+  S+L EVV E    +I   S + ++  L L A++L ++PLL L++A++  ++K    EE +R F   ND TPEEEA  RE
Sbjct:   44 IPLPNVETNILRKVIEYCEHHYNNPPDEIPKPLKSSNLAEVVSEWDYQFINDNSDQKVLFALILAANYLNIKPLLDLSVAKVATMVKGQTAEEIRRRFSIVNDFTPEEEAQVRE 157          
BLAST of NO14G00110 vs. NCBI_GenBank
Match: XP_002294707.1 (hypothetical protein THAPSDRAFT_38460, partial [Thalassiosira pseudonana CCMP1335] >EED88067.1 hypothetical protein THAPSDRAFT_38460, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 63.9 bits (154), Expect = 6.100e-7
Identity = 36/113 (31.86%), Postives = 66/113 (58.41%), Query Frame = 0
Query:   48 LTLPTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQEEYSDYIQSLSYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEAVGRE 161
            + LP V+    + V+ F + H    M +I KP+  +++ EVVQ+ Y+D++ ++    L +++  A+++ ++PLL L  A +  ++K    EE ++ F   ND +PEEEA  RE
Sbjct:   37 IPLPNVKSTVLKKVIEFCKHHRSEPMTEIEKPLKSAAMAEVVQKWYADFV-NVEQVLLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIANDFSPEEEAQVRE 148          
The following BLAST results are available for this feature:
BLAST of NO14G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM24786.11.400e-4362.50glycoprotein fp21 [Nannochloropsis gaditana][more]
XP_003879810.13.200e-836.84protein F46A9.4, confirmed by transcript evidence,... [more]
XP_002369572.17.200e-834.21suppressor of kinetochore protein 1, putative [Tox... [more]
PFH31746.17.200e-834.21putative suppressor of kinetochore protein 1 [Besn... [more]
XP_009033202.19.400e-834.51hypothetical protein AURANDRAFT_58667 [Aureococcus... [more]
EWM25403.19.400e-833.63glycoprotein fp21 [Nannochloropsis gaditana][more]
PHJ26138.14.700e-736.84suppressor of kinetochore protein 1 [Cystoisospora... [more]
XP_002294707.16.100e-731.86hypothetical protein THAPSDRAFT_38460, partial [Th... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL137nonsL137Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006190NSK006190Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100725g3gene5695Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00110.3NO14G00110.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G00110.2NO14G00110.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G00110.1NO14G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00110.3NO14G00110.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G00110.2NO14G00110.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G00110.1NO14G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00110 ID=NO14G00110|Name=NO14G00110|organism=Nannochloropsis oceanica|type=gene|length=1973bp
AACAGAATATGAATGTTCGCATCATCTTGAAAAATGGACAGGAACTGGAC
GCCGCGGTTGACGCAGCCTTGCTCCTGCCCTCGAGCCTTCTAGCCGGCAT
GCTCGACGACGAGGAAGAGGAACTTCGGGgtaagtgagggacggatggaa
atgaggtgcaaaaaagcaataaatgggtaaggtgtatctagaaatgtggc
tgtattctcccgtcgatagcactcctactaagggtaggcgccgctctggt
ccgttttatatgtgcgcgccgatcgagaggcatggtgacatgctatacgc
tcatttatacaccccaagagctttactgcacatttatcctgcgcatgtct
gtgaggctaaagatttctgcttttgctcatacatctcccacagGCGAAGA
GGAAGAGCGCATGCTCACCCTCCCTACTGTCGAGAAGGCGACCTTTGAAA
ACGTCTTGCGCTTCCTGCGCCTTCACGCCCATGCCCGCATGCACGACATC
CCCAAGGTAGGTAGGAGACACACAGAGGCTTCAACACGAAGGAAAGAAAA
AGAAGGAGGGGGCGGGAGAAAAGTGCTTGTTATGTAGTCGGATGAGGCGG
AGGAGGGACTGTCGGGTTCAAGAGAGACAGGGGAGGGATAAGCTGGATGC
CCTCGTGCAGGAGTTTATGAGATGCCTGGAGGAATTGACTCATGGGAAAG
AAAAAAAAGGAAAAGGGAGCGGAAAATAGCATGGAGGTGGACGAAGAGCA
TGAGGAAAATGAGGAGGATGAGAGCAGAAGAAAAAGAGGAAAGACGATGC
ATAATCGCAGGCGCATTTCCTCGTGATGAATGAGGCGCTCACATCCCCTC
CAATACCTCCTTCTCCTCTTCCTCTCCTCCTCCAGCCCATCACCCAATCG
AGTCTTGGCGAGGTAGTGCAAGAAGAATATAGCGACTACATCCAATCACT
CTCCTACAGAGACCTCATTCAGgtacgtaggcggtgcttttccctccttt
ctccctcctccctcaagccctcccttccccttccagGTGCTGGAACTCGC
TCACTTTCTGGTGCTGGAGCCCCTTCTCCGCTTGGCCCTCGCCCGCCTTC
ACTTTGTGCTAAAAGCGACCCCGCTGGAGGAGTTCAAGCGCTTGTTCCTC
TTCCAGAACGACTTGACGCCGGAGGAAGAAGCGgtagggagggagggagg
gagggagggaagaagggtgaatgggggtgagtataaggcgtccaacgcgg
ccgtagtttggacggagaaaagagatgaacgaggtgaataaggggggagg
gagggaagagagggagggaagggatggagggagggggagtctgacccagg
gatgaaaagagaacccgacgctgacaacccctctcctctccctccctgcc
ttcctccttccgcccctccctcagGACCTTCGCAAGGAGTATCTGGAAGA
GATCAAGCTCCGCAACGCCTTCTCGTTCAAGGCGGCGCAGGAGCAGCAAG
AGGGAGGAGGAGGAGGGGGAGGAGGGGAGGCGAGCACGGCGCAGCCCTAG
AGGTAGCCTTGGGCGTAGAGAGAGGGCGGGGGAGAGGGGGGAGTGAAAGA
AGGGATGTACAGAAGGCGGGACCGAGGACGGGACCGAGGACGGGACCGCG
GACGGGACCGAGGACGGGACCGAGGACGGGGGGGCATTGGCGAGTGTGAG
CACACCGAGAGGATGCCTGCGGTGAACTTTGTTGATTGGATTGAGGATGG
AAAGTCGTCGAAGATGGACGGATGAGAGGCAAAGGGTGTGAAGGACCAGG
TGGAGGGAGAGAGAAAGAAAGAGAGAGCCGAGGACACACACACAGATAGA
AGGAGAAGAAATAATAGCAGGAGAGGAGGAGGAAGAAGGAGAAGTAGAAG
AGGAAGGAGGGGAAGAAGTAGTTCAAGATCAAGAAGAAAAGAAGAAATGA
GAGGAATAGGACTTCTTTCATGA
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protein sequence of NO14G00110.3

>NO14G00110.3-protein ID=NO14G00110.3-protein|Name=NO14G00110.3|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MNEALTSPPIPPSPLPLLLQPITQSSLGEVVQEEYSDYIQSLSYRDLIQV
LELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEADL
RKEYLEEIKLRNAFSFKAAQEQQEGGGGGGGGEASTAQP*
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protein sequence of NO14G00110.2

>NO14G00110.2-protein ID=NO14G00110.2-protein|Name=NO14G00110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MNVRIILKNGQELDAAVDAALLLPSSLLAGMLDDEEEELRGEEEERMLTL
PTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQEEYSDYIQSL
SYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDL
TPEEEAVGREGGREGRRVNGGEYKASNAAVVWTEKRDERGE*
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protein sequence of NO14G00110.1

>NO14G00110.1-protein ID=NO14G00110.1-protein|Name=NO14G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MNVRIILKNGQELDAAVDAALLLPSSLLAGMLDDEEEELRGEEEERMLTL
PTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQEEYSDYIQSL
SYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDL
TPEEEADLRKEYLEEIKLRNAFSFKAAQEQQEGGGGGGGGEASTAQP*
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Synonyms
Publications